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Editing gene: ST3GAL5 (CAeditome ID:8869)

Gene summary for ST3GAL5

Gene summary

Gene information	Gene symbol	ST3GAL5
	Gene ID	8869
	Gene name	ST3 beta-galactoside alpha-2,3-sialyltransferase 5
	Synonyms	SATI\|SIAT9\|SIATGM3S\|SPDRS\|ST3Gal V\|ST3GalV
	Cytomap	2p11.2
	Type of gene	protein-coding
	Description	lactosylceramide alpha-2,3-sialyltransferaseCMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferaseGM3 synthaseST3 beta-galactoside alpha-23-sialyltransferase 5alpha 2,3-sialyltransferase Vganglioside GM3 synthasesialyltransferase 9 (CMP-NeuAc:lactos
	Modification date	20210518
	UniProtAcc	Q9UNP4
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
ST3GAL5	GO:0047291	Lactosylceramide alpha-2,3-sialyltransferase	9822625

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RNA A-to-I events for ST3GAL5

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000115525.15

RNA A-to-I editing events in Cancer.

CAediting_197188(85840680, -), CAediting_197189(85840689, -), CAediting_197190(85840741, -), CAediting_197191(85840759, -), CAediting_197192(85840778, -), CAediting_197193(85840832, -), CAediting_197194(85840911, -), CAediting_197195(85841436, -), CAediting_197196(85841454, -), CAediting_197197(85841529, -), CAediting_197198(85841536, -), CAediting_197199(85841585, -), CAediting_197200(85841586, -), CAediting_197201(85841590, -), CAediting_197202(85841599, -), CAediting_197203(85841607, -), CAediting_197204(85849121, -), CAediting_197205(85849133, -), CAediting_197206(85849135, -), CAediting_197207(85849148, -), CAediting_197208(85849195, -), CAediting_197209(85849198, -), CAediting_197210(85849274, -), CAediting_197211(85849328, -), CAediting_197212(85849331, -), CAediting_197213(85849344, -), CAediting_197214(85849366, -), CAediting_197215(85849388, -), CAediting_197216(85849429, -), CAediting_197217(85849440, -), CAediting_197218(85849447, -), CAediting_197219(85849464, -), CAediting_197220(85849465, -), CAediting_197221(85849480, -), CAediting_197222(85849515, -), CAediting_197223(85849571, -), CAediting_197224(85849613, -), CAediting_197225(85850952, -), CAediting_197226(85850982, -), CAediting_197227(85850983, -), CAediting_197228(85850984, -), CAediting_197229(85850989, -), CAediting_197230(85850993, -), CAediting_197231(85851002, -), CAediting_197232(85851006, -), CAediting_197233(85851012, -), CAediting_197234(85851013, -), CAediting_197235(85851014, -), CAediting_197236(85851022, -), CAediting_197237(85851037, -), CAediting_197238(85851045, -), CAediting_197239(85851054, -), CAediting_197240(85851055, -), CAediting_197241(85851063, -), CAediting_197242(85851068, -), CAediting_197243(85851085, -), CAediting_197244(85851086, -), CAediting_197245(85851087, -), CAediting_197246(85851090, -), CAediting_197247(85851099, -), CAediting_197248(85851110, -), CAediting_197249(85851111, -), CAediting_197250(85851112, -), CAediting_197251(85851130, -), CAediting_197252(85851135, -), CAediting_197253(85851141, -), CAediting_197254(85851182, -), CAediting_197255(85851187, -), CAediting_197256(85851196, -), CAediting_197257(85856636, -), CAediting_197258(85856638, -), CAediting_197259(85856642, -), CAediting_197260(85856648, -), CAediting_197261(85856659, -), CAediting_197262(85856662, -), CAediting_197263(85856672, -), CAediting_197264(85856678, -), CAediting_197265(85856681, -), CAediting_197266(85856685, -), CAediting_197267(85856686, -), CAediting_197268(85856693, -), CAediting_197269(85856698, -), CAediting_197270(85856734, -), CAediting_197271(85856741, -), CAediting_197272(85856746, -), CAediting_197273(85856747, -), CAediting_197274(85856748, -), CAediting_197275(85856749, -), CAediting_197276(85856765, -), CAediting_197277(85856783, -), CAediting_197278(85856838, -), CAediting_197279(85856843, -), CAediting_197280(85856844, -), CAediting_197281(85856846, -), CAediting_197282(85856963, -), CAediting_197283(85856975, -), CAediting_197284(85856976, -), CAediting_197285(85856985, -), CAediting_197286(85857002, -), CAediting_197287(85857032, -), CAediting_197288(85857037, -), CAediting_197289(85857049, -), CAediting_197290(85857145, -), CAediting_197291(85857150, -), CAediting_197292(85857158, -), CAediting_197293(85857159, -), CAediting_197294(85857162, -), CAediting_197295(85857169, -), CAediting_197296(85857195, -), CAediting_197297(85857212, -), CAediting_197298(85857286, -), CAediting_197299(85857292, -), CAediting_197300(85857388, -), CAediting_197301(85857499, -), CAediting_197302(85858338, -), CAediting_197303(85858581, -), CAediting_197304(85858582, -), CAediting_197305(85860616, -), CAediting_197306(85867073, -), CAediting_197307(85867125, -), CAediting_197308(85871098, -), CAediting_197309(85875122, -), CAediting_197310(85876568, -), CAediting_197311(85876571, -), CAediting_197312(85876574, -), CAediting_197313(85876627, -), CAediting_197314(85876705, -),

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RNA editing positional annotations for ST3GAL5 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_197188	chr2_85840680_-	ncRNA_intronic
CAediting_197189	chr2_85840689_-	ncRNA_intronic
CAediting_197190	chr2_85840741_-	ncRNA_intronic
CAediting_197191	chr2_85840759_-	ncRNA_intronic
CAediting_197192	chr2_85840778_-	ncRNA_intronic
CAediting_197193	chr2_85840832_-	ncRNA_intronic
CAediting_197194	chr2_85840911_-	ncRNA_intronic
CAediting_197195	chr2_85841436_-	ncRNA_intronic
CAediting_197196	chr2_85841454_-	ncRNA_intronic
CAediting_197197	chr2_85841529_-	ncRNA_intronic
CAediting_197198	chr2_85841536_-	ncRNA_intronic
CAediting_197199	chr2_85841585_-	ncRNA_intronic
CAediting_197200	chr2_85841586_-	ncRNA_intronic
CAediting_197201	chr2_85841590_-	ncRNA_intronic
CAediting_197202	chr2_85841599_-	ncRNA_intronic
CAediting_197203	chr2_85841607_-	ncRNA_intronic
CAediting_197204	chr2_85849121_-	ncRNA_exonic
CAediting_197205	chr2_85849133_-	ncRNA_exonic
CAediting_197206	chr2_85849135_-	ncRNA_exonic
CAediting_197207	chr2_85849148_-	ncRNA_exonic
CAediting_197208	chr2_85849195_-	ncRNA_exonic
CAediting_197209	chr2_85849198_-	ncRNA_exonic
CAediting_197210	chr2_85849274_-	ncRNA_exonic
CAediting_197211	chr2_85849328_-	ncRNA_exonic
CAediting_197212	chr2_85849331_-	ncRNA_exonic
CAediting_197213	chr2_85849344_-	ncRNA_exonic
CAediting_197214	chr2_85849366_-	ncRNA_exonic
CAediting_197215	chr2_85849388_-	ncRNA_exonic
CAediting_197216	chr2_85849429_-	ncRNA_exonic
CAediting_197217	chr2_85849440_-	ncRNA_exonic
CAediting_197218	chr2_85849447_-	ncRNA_exonic
CAediting_197219	chr2_85849464_-	ncRNA_exonic
CAediting_197220	chr2_85849465_-	ncRNA_exonic
CAediting_197221	chr2_85849480_-	ncRNA_exonic
CAediting_197222	chr2_85849515_-	ncRNA_exonic
CAediting_197223	chr2_85849571_-	ncRNA_exonic
CAediting_197224	chr2_85849613_-	intronic
CAediting_197225	chr2_85850952_-	intronic
CAediting_197226	chr2_85850982_-	intronic
CAediting_197227	chr2_85850983_-	intronic
CAediting_197228	chr2_85850984_-	intronic
CAediting_197229	chr2_85850989_-	intronic
CAediting_197230	chr2_85850993_-	intronic
CAediting_197231	chr2_85851002_-	intronic
CAediting_197232	chr2_85851006_-	intronic
CAediting_197233	chr2_85851012_-	intronic
CAediting_197234	chr2_85851013_-	intronic
CAediting_197235	chr2_85851014_-	intronic
CAediting_197236	chr2_85851022_-	intronic
CAediting_197237	chr2_85851037_-	intronic
CAediting_197238	chr2_85851045_-	intronic
CAediting_197239	chr2_85851054_-	intronic
CAediting_197240	chr2_85851055_-	intronic
CAediting_197241	chr2_85851063_-	intronic
CAediting_197242	chr2_85851068_-	intronic
CAediting_197243	chr2_85851085_-	intronic
CAediting_197244	chr2_85851086_-	intronic
CAediting_197245	chr2_85851087_-	intronic
CAediting_197246	chr2_85851090_-	intronic
CAediting_197247	chr2_85851099_-	intronic
CAediting_197248	chr2_85851110_-	intronic
CAediting_197249	chr2_85851111_-	intronic
CAediting_197250	chr2_85851112_-	intronic
CAediting_197251	chr2_85851130_-	intronic
CAediting_197252	chr2_85851135_-	intronic
CAediting_197253	chr2_85851141_-	intronic
CAediting_197254	chr2_85851182_-	intronic
CAediting_197255	chr2_85851187_-	intronic
CAediting_197256	chr2_85851196_-	intronic
CAediting_197257	chr2_85856636_-	ncRNA_intronic
CAediting_197258	chr2_85856638_-	ncRNA_intronic
CAediting_197259	chr2_85856642_-	ncRNA_intronic
CAediting_197260	chr2_85856648_-	ncRNA_intronic
CAediting_197261	chr2_85856659_-	ncRNA_intronic
CAediting_197262	chr2_85856662_-	ncRNA_intronic
CAediting_197263	chr2_85856672_-	ncRNA_intronic
CAediting_197264	chr2_85856678_-	ncRNA_intronic
CAediting_197265	chr2_85856681_-	ncRNA_intronic
CAediting_197266	chr2_85856685_-	ncRNA_intronic
CAediting_197267	chr2_85856686_-	ncRNA_intronic
CAediting_197268	chr2_85856693_-	ncRNA_intronic
CAediting_197269	chr2_85856698_-	ncRNA_intronic
CAediting_197270	chr2_85856734_-	ncRNA_intronic
CAediting_197271	chr2_85856741_-	ncRNA_intronic
CAediting_197272	chr2_85856746_-	ncRNA_intronic
CAediting_197273	chr2_85856747_-	ncRNA_intronic
CAediting_197274	chr2_85856748_-	ncRNA_intronic
CAediting_197275	chr2_85856749_-	ncRNA_intronic
CAediting_197276	chr2_85856765_-	ncRNA_intronic
CAediting_197277	chr2_85856783_-	ncRNA_intronic
CAediting_197278	chr2_85856838_-	ncRNA_intronic
CAediting_197279	chr2_85856843_-	ncRNA_intronic
CAediting_197280	chr2_85856844_-	ncRNA_intronic
CAediting_197281	chr2_85856846_-	ncRNA_intronic
CAediting_197282	chr2_85856963_-	ncRNA_intronic
CAediting_197283	chr2_85856975_-	ncRNA_intronic
CAediting_197284	chr2_85856976_-	ncRNA_intronic
CAediting_197285	chr2_85856985_-	ncRNA_intronic
CAediting_197286	chr2_85857002_-	ncRNA_intronic
CAediting_197287	chr2_85857032_-	ncRNA_intronic
CAediting_197288	chr2_85857037_-	ncRNA_intronic
CAediting_197289	chr2_85857049_-	ncRNA_intronic
CAediting_197290	chr2_85857145_-	ncRNA_intronic
CAediting_197291	chr2_85857150_-	ncRNA_intronic
CAediting_197292	chr2_85857158_-	ncRNA_intronic
CAediting_197293	chr2_85857159_-	ncRNA_intronic
CAediting_197294	chr2_85857162_-	ncRNA_intronic
CAediting_197295	chr2_85857169_-	ncRNA_intronic
CAediting_197296	chr2_85857195_-	ncRNA_intronic
CAediting_197297	chr2_85857212_-	ncRNA_intronic
CAediting_197298	chr2_85857286_-	ncRNA_intronic
CAediting_197299	chr2_85857292_-	ncRNA_intronic
CAediting_197300	chr2_85857388_-	ncRNA_intronic
CAediting_197301	chr2_85857499_-	ncRNA_intronic
CAediting_197302	chr2_85858338_-	ncRNA_intronic
CAediting_197303	chr2_85858581_-	ncRNA_intronic
CAediting_197304	chr2_85858582_-	ncRNA_intronic
CAediting_197305	chr2_85860616_-	ncRNA_intronic
CAediting_197306	chr2_85867073_-	ncRNA_intronic
CAediting_197307	chr2_85867125_-	ncRNA_intronic
CAediting_197308	chr2_85871098_-	ncRNA_intronic
CAediting_197309	chr2_85875122_-	ncRNA_intronic
CAediting_197310	chr2_85876568_-	ncRNA_intronic
CAediting_197311	chr2_85876571_-	ncRNA_intronic
CAediting_197312	chr2_85876574_-	ncRNA_intronic
CAediting_197313	chr2_85876627_-	ncRNA_intronic
CAediting_197314	chr2_85876705_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_197188	chr2_85840680_-	SINE	Alu	AluSx4
CAediting_197189	chr2_85840689_-	SINE	Alu	AluSx4
CAediting_197190	chr2_85840741_-	SINE	Alu	AluSx4
CAediting_197191	chr2_85840759_-	SINE	Alu	AluSx4
CAediting_197192	chr2_85840778_-	SINE	Alu	AluSx4
CAediting_197193	chr2_85840832_-	SINE	Alu	AluSx4
CAediting_197194	chr2_85840911_-	SINE	Alu	AluSx4
CAediting_197195	chr2_85841436_-	SINE	Alu	AluJb
CAediting_197196	chr2_85841454_-	SINE	Alu	AluJb
CAediting_197197	chr2_85841529_-	SINE	Alu	AluJb
CAediting_197198	chr2_85841536_-	SINE	Alu	AluJb
CAediting_197199	chr2_85841585_-	SINE	Alu	AluJb
CAediting_197200	chr2_85841586_-	SINE	Alu	AluJb
CAediting_197201	chr2_85841590_-	SINE	Alu	AluJb
CAediting_197202	chr2_85841599_-	SINE	Alu	AluJb
CAediting_197203	chr2_85841607_-	SINE	Alu	AluJb
CAediting_197204	chr2_85849121_-	SINE	Alu	AluJb
CAediting_197205	chr2_85849133_-	SINE	Alu	AluJb
CAediting_197206	chr2_85849135_-	SINE	Alu	AluJb
CAediting_197207	chr2_85849148_-	SINE	Alu	AluJb
CAediting_197208	chr2_85849195_-	SINE	Alu	AluJb
CAediting_197209	chr2_85849198_-	SINE	Alu	AluJb
CAediting_197210	chr2_85849274_-	SINE	Alu	AluJb
CAediting_197211	chr2_85849328_-	SINE	Alu	AluJb
CAediting_197212	chr2_85849331_-	SINE	Alu	AluJb
CAediting_197213	chr2_85849344_-	SINE	Alu	AluJb
CAediting_197214	chr2_85849366_-	SINE	Alu	AluJb
CAediting_197215	chr2_85849388_-	SINE	Alu	AluJb
CAediting_197216	chr2_85849429_-	SINE	Alu	AluY
CAediting_197217	chr2_85849440_-	SINE	Alu	AluY
CAediting_197218	chr2_85849447_-	SINE	Alu	AluY
CAediting_197219	chr2_85849464_-	SINE	Alu	AluY
CAediting_197220	chr2_85849465_-	SINE	Alu	AluY
CAediting_197221	chr2_85849480_-	SINE	Alu	AluY
CAediting_197222	chr2_85849515_-	SINE	Alu	AluY
CAediting_197223	chr2_85849571_-	SINE	Alu	AluY
CAediting_197224	chr2_85849613_-	SINE	Alu	AluY
CAediting_197225	chr2_85850952_-	SINE	Alu	AluSg
CAediting_197226	chr2_85850982_-	SINE	Alu	AluSg
CAediting_197227	chr2_85850983_-	SINE	Alu	AluSg
CAediting_197228	chr2_85850984_-	SINE	Alu	AluSg
CAediting_197229	chr2_85850989_-	SINE	Alu	AluSg
CAediting_197230	chr2_85850993_-	SINE	Alu	AluSg
CAediting_197231	chr2_85851002_-	SINE	Alu	AluSg
CAediting_197232	chr2_85851006_-	SINE	Alu	AluSg
CAediting_197233	chr2_85851012_-	SINE	Alu	AluSg
CAediting_197234	chr2_85851013_-	SINE	Alu	AluSg
CAediting_197235	chr2_85851014_-	SINE	Alu	AluSg
CAediting_197236	chr2_85851022_-	SINE	Alu	AluSg
CAediting_197237	chr2_85851037_-	SINE	Alu	AluSg
CAediting_197238	chr2_85851045_-	SINE	Alu	AluSg
CAediting_197239	chr2_85851054_-	SINE	Alu	AluSg
CAediting_197240	chr2_85851055_-	SINE	Alu	AluSg
CAediting_197241	chr2_85851063_-	SINE	Alu	AluSg
CAediting_197242	chr2_85851068_-	SINE	Alu	AluSg
CAediting_197243	chr2_85851085_-	SINE	Alu	AluSg
CAediting_197244	chr2_85851086_-	SINE	Alu	AluSg
CAediting_197245	chr2_85851087_-	SINE	Alu	AluSg
CAediting_197246	chr2_85851090_-	SINE	Alu	AluSg
CAediting_197247	chr2_85851099_-	SINE	Alu	AluSg
CAediting_197248	chr2_85851110_-	SINE	Alu	AluSg
CAediting_197249	chr2_85851111_-	SINE	Alu	AluSg
CAediting_197250	chr2_85851112_-	SINE	Alu	AluSg
CAediting_197251	chr2_85851130_-	SINE	Alu	AluSg
CAediting_197252	chr2_85851135_-	SINE	Alu	AluSg
CAediting_197253	chr2_85851141_-	SINE	Alu	AluSg
CAediting_197254	chr2_85851182_-	SINE	Alu	AluSg
CAediting_197255	chr2_85851187_-	SINE	Alu	AluSg
CAediting_197256	chr2_85851196_-	SINE	Alu	AluSg
CAediting_197257	chr2_85856636_-	SINE	Alu	AluJr4
CAediting_197258	chr2_85856638_-	SINE	Alu	AluJr4
CAediting_197259	chr2_85856642_-	SINE	Alu	AluJr4
CAediting_197260	chr2_85856648_-	SINE	Alu	AluJr4
CAediting_197261	chr2_85856659_-	SINE	Alu	AluJr4
CAediting_197262	chr2_85856662_-	SINE	Alu	AluJr4
CAediting_197263	chr2_85856672_-	SINE	Alu	AluJr4
CAediting_197264	chr2_85856678_-	SINE	Alu	AluJr4
CAediting_197265	chr2_85856681_-	SINE	Alu	AluJr4
CAediting_197266	chr2_85856685_-	SINE	Alu	AluJr4
CAediting_197267	chr2_85856686_-	SINE	Alu	AluJr4
CAediting_197268	chr2_85856693_-	SINE	Alu	AluJr4
CAediting_197269	chr2_85856698_-	SINE	Alu	AluJr4
CAediting_197270	chr2_85856734_-	SINE	Alu	AluJr4
CAediting_197271	chr2_85856741_-	SINE	Alu	AluJr4
CAediting_197272	chr2_85856746_-	SINE	Alu	AluJr4
CAediting_197273	chr2_85856747_-	SINE	Alu	AluJr4
CAediting_197274	chr2_85856748_-	SINE	Alu	AluJr4
CAediting_197275	chr2_85856749_-	SINE	Alu	AluJr4
CAediting_197276	chr2_85856765_-	SINE	Alu	AluJr4
CAediting_197277	chr2_85856783_-	SINE	Alu	AluJr4
CAediting_197278	chr2_85856838_-	SINE	Alu	AluJr4
CAediting_197279	chr2_85856843_-	SINE	Alu	AluJr4
CAediting_197280	chr2_85856844_-	SINE	Alu	AluJr4
CAediting_197281	chr2_85856846_-	SINE	Alu	AluJr4
CAediting_197282	chr2_85856963_-	SINE	Alu	AluJb
CAediting_197283	chr2_85856975_-	SINE	Alu	AluJb
CAediting_197284	chr2_85856976_-	SINE	Alu	AluJb
CAediting_197285	chr2_85856985_-	SINE	Alu	AluJb
CAediting_197286	chr2_85857002_-	SINE	Alu	AluJb
CAediting_197287	chr2_85857032_-	SINE	Alu	AluJb
CAediting_197288	chr2_85857037_-	SINE	Alu	AluJb
CAediting_197289	chr2_85857049_-	SINE	Alu	AluJb
CAediting_197290	chr2_85857145_-	SINE	Alu	AluJb
CAediting_197291	chr2_85857150_-	SINE	Alu	AluJb
CAediting_197292	chr2_85857158_-	SINE	Alu	AluJb
CAediting_197293	chr2_85857159_-	SINE	Alu	AluJb
CAediting_197294	chr2_85857162_-	SINE	Alu	AluJb
CAediting_197295	chr2_85857169_-	SINE	Alu	AluJb
CAediting_197296	chr2_85857195_-	SINE	Alu	AluJb
CAediting_197297	chr2_85857212_-	SINE	Alu	AluJb
CAediting_197298	chr2_85857286_-	SINE	Alu	AluSx
CAediting_197299	chr2_85857292_-	SINE	Alu	AluSx
CAediting_197300	chr2_85857388_-	SINE	Alu	AluSx
CAediting_197301	chr2_85857499_-	SINE	Alu	AluSx
CAediting_197302	chr2_85858338_-	SINE	Alu	AluSq2
CAediting_197303	chr2_85858581_-	SINE	Alu	AluSq2
CAediting_197304	chr2_85858582_-	SINE	Alu	AluSq2
CAediting_197305	chr2_85860616_-	SINE	Alu	AluJo
CAediting_197306	chr2_85867073_-	SINE	Alu	AluJr
CAediting_197307	chr2_85867125_-	SINE	Alu	AluJr
CAediting_197308	chr2_85871098_-	SINE	Alu	AluJb
CAediting_197309	chr2_85875122_-	SINE	Alu	AluJr4
CAediting_197310	chr2_85876568_-	SINE	Alu	AluSz
CAediting_197311	chr2_85876571_-	SINE	Alu	AluSz
CAediting_197312	chr2_85876574_-	SINE	Alu	AluSz
CAediting_197313	chr2_85876627_-	SINE	Alu	AluSz
CAediting_197314	chr2_85876705_-	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for ST3GAL5

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000115525.15.ST3GAL5.

Correlation between RNA A-to-I editing and PSI for ENSG00000115525.15.ST3GAL5.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ST3GAL5

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for ST3GAL5

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for ST3GAL5

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ST3GAL5

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000461206.1	retained_intron

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_197204	ENST00000461206.1	chr2_85849121_-	-1011.10	-1010.20	-1030.50
CAediting_197205	ENST00000461206.1	chr2_85849133_-	-1016.80	-1010.20	-1030.50
CAediting_197206	ENST00000461206.1	chr2_85849135_-	-1009.90	-1010.20	-1030.50
CAediting_197207	ENST00000461206.1	chr2_85849148_-	-1009.80	-1010.20	-1030.50
CAediting_197208	ENST00000461206.1	chr2_85849195_-	-1010.50	-1010.20	-1030.50
CAediting_197209	ENST00000461206.1	chr2_85849198_-	-1009.80	-1010.20	-1030.50
CAediting_197210	ENST00000461206.1	chr2_85849274_-	-1010.20	-1010.20	-1030.50
CAediting_197211	ENST00000461206.1	chr2_85849328_-	-1013.00	-1010.20	-1030.50
CAediting_197212	ENST00000461206.1	chr2_85849331_-	-1010.10	-1010.20	-1030.50
CAediting_197213	ENST00000461206.1	chr2_85849344_-	-1009.80	-1010.20	-1030.50
CAediting_197214	ENST00000461206.1	chr2_85849366_-	-1010.40	-1010.20	-1030.50
CAediting_197215	ENST00000461206.1	chr2_85849388_-	-1012.30	-1010.20	-1030.50
CAediting_197216	ENST00000461206.1	chr2_85849429_-	-1012.60	-1010.20	-1030.50
CAediting_197217	ENST00000461206.1	chr2_85849440_-	-1014.60	-1010.20	-1030.50
CAediting_197218	ENST00000461206.1	chr2_85849447_-	-1012.80	-1010.20	-1030.50
CAediting_197219	ENST00000461206.1	chr2_85849464_-	-1012.00	-1010.20	-1030.50
CAediting_197220	ENST00000461206.1	chr2_85849465_-	-1009.90	-1010.20	-1030.50
CAediting_197221	ENST00000461206.1	chr2_85849480_-	-1009.80	-1010.20	-1030.50
CAediting_197222	ENST00000461206.1	chr2_85849515_-	-1010.10	-1010.20	-1030.50
CAediting_197223	ENST00000461206.1	chr2_85849571_-	-1009.80	-1010.20	-1030.50

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Relation with ADAR for ST3GAL5

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for ST3GAL5

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for ST3GAL5

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for ST3GAL5

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for ST3GAL5

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
ST3GAL5	C1836824	Amish Infantile Epilepsy Syndrome	4	CTD_human;GENOMICS_ENGLAND;ORPHANET
ST3GAL5	C1836830	Developmental regression	1	GENOMICS_ENGLAND
ST3GAL5	C3714756	Intellectual Disability	1	GENOMICS_ENGLAND

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene