![]() |
||||||
|
![]() | |
![]() | |
![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
![]() | |
![]() | |
![]() | The effects of the RNA editing to the stability of the RNA structures |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Editing gene: SAP30 (CAeditome ID:8819) |
Gene summary for SAP30 |
![]() |
Gene information | Gene symbol | SAP30 | Gene ID | 8819 |
Gene name | Sin3A associated protein 30 | |
Synonyms | - | |
Cytomap | 4q34.1 | |
Type of gene | protein-coding | |
Description | histone deacetylase complex subunit SAP3030 kDa Sin3-associated polypeptideSin3 corepressor complex subunit SAP30Sin3-associated polypeptide, 30kDaSin3A-associated protein, 30kDasin3-associated polypeptide p30sin3-associated polypeptide, 30 kDa | |
Modification date | 20210518 | |
UniProtAcc | O75446 | |
Context |
![]() |
Gene | GO ID | GO term | PubMed ID |
SAP30 | GO:0003714 | Histone deacetylase complex subunit SAP30 | 9651585 |
SAP30 | GO:0000122 | Histone deacetylase complex subunit SAP30 | 9651585 |
SAP30 | GO:0052472 | Histone deacetylase complex subunit SAP30 | 21221920 |
SAP30 | GO:0005654 | Histone deacetylase complex subunit SAP30 | 0000052 |
SAP30 | GO:0000118 | Histone deacetylase complex subunit SAP30 | 9651585 |
Top |
RNA A-to-I events for SAP30 |
![]() |
![]() |
![]() |
![]() |
CAediting_393375(173371427, +), CAediting_393376(173374379, +), CAediting_393377(173374380, +), CAediting_393378(173374387, +), CAediting_393379(173374393, +), CAediting_393380(173374470, +), CAediting_393381(173374492, +), CAediting_393382(173374528, +), CAediting_393383(173376758, +), |
Top |
RNA editing positional annotations for SAP30 using Annovar |
![]() |
CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_393375 | chr4_173371427_+ | nonsynonymous SNV | ENST00000296504.3 | c.A245G | p.N82S | T | D | D |
![]() |
CAeditome ID | Position | Variant type |
CAediting_393375 | chr4_173371427_+ | exonic |
CAediting_393376 | chr4_173374379_+ | intronic |
CAediting_393377 | chr4_173374380_+ | intronic |
CAediting_393378 | chr4_173374387_+ | intronic |
CAediting_393379 | chr4_173374393_+ | intronic |
CAediting_393380 | chr4_173374470_+ | intronic |
CAediting_393381 | chr4_173374492_+ | intronic |
CAediting_393382 | chr4_173374528_+ | intronic |
CAediting_393383 | chr4_173376758_+ | intronic |
![]() |
CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_393376 | chr4_173374379_+ | SINE | Alu | AluSz |
CAediting_393377 | chr4_173374380_+ | SINE | Alu | AluSz |
CAediting_393378 | chr4_173374387_+ | SINE | Alu | AluSz |
CAediting_393379 | chr4_173374393_+ | SINE | Alu | AluSz |
CAediting_393380 | chr4_173374470_+ | SINE | Alu | AluSz |
CAediting_393381 | chr4_173374492_+ | SINE | Alu | AluSz |
CAediting_393382 | chr4_173374528_+ | SINE | Alu | AluSz |
CAediting_393383 | chr4_173376758_+ | SINE | Alu | AluJb |
Top |
RNA A-to-I editing events in the alternative splicing sites for SAP30 |
![]() |
AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
![]() |
![]() |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for SAP30 |
![]() * The grey color means N/A. |
![]() |
![]() * Click on the image to enlarge it in a new window. |
Top |
Protein coding region RNA A-to-I editings for SAP30 |
![]() * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for SAP30 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
Top |
The effects of the RNA editing to the stability of the RNA structures for SAP30 |
![]() * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000296504.3 | protein_coding | ![]() | ![]() |
![]() |
CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_393375 | ENST00000296504.3 | chr4_173371427_+ | -405.90 | -404.10 | -405.90 |
Top |
Relation with ADAR for SAP30 |
![]() |
Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
Top |
Relation with cancer stages for SAP30 |
![]() |
Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
Top |
Relation with survival for SAP30 |
![]() |
Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
Top |
RelatedDrugs for SAP30 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for SAP30 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |