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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CD164 (CAeditome ID:8763) |
Gene summary for CD164 |
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Gene information | Gene symbol | CD164 | Gene ID | 8763 |
Gene name | CD164 molecule | |
Synonyms | DFNA66|MGC-24|MGC-24v|MUC-24|endolyn | |
Cytomap | 6q21 | |
Type of gene | protein-coding | |
Description | sialomucin core protein 24CD164 antigen, sialomucinmulti-glycosylated core protein 24 | |
Modification date | 20210518 | |
UniProtAcc | Q04900 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
CD164 | GO:0007155 | Sialomucin core protein 24 | 10491205 |
CD164 | GO:0007157 | Sialomucin core protein 24 | 10491205 |
CD164 | GO:0005764 | Sialomucin core protein 24 | 11027692 |
CD164 | GO:0005768 | Sialomucin core protein 24 | 11027692 |
CD164 | GO:0005768 | Sialomucin core protein 24 | 26197441 |
CD164 | GO:0005886 | Sialomucin core protein 24 | 10491205 |
CD164 | GO:0005886 | Sialomucin core protein 24 | 26197441 |
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RNA A-to-I events for CD164 |
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CAediting_499252(109371315, -), CAediting_499253(109371318, -), CAediting_499254(109371347, -), CAediting_499255(109371348, -), CAediting_499256(109371359, -), CAediting_499257(109371388, -), CAediting_499258(109371389, -), CAediting_499259(109371415, -), CAediting_499260(109371428, -), CAediting_499261(109371451, -), CAediting_499262(109371468, -), CAediting_499263(109371469, -), CAediting_499264(109371482, -), CAediting_499265(109371492, -), CAediting_499266(109371499, -), CAediting_499267(109371500, -), CAediting_499268(109371516, -), CAediting_499269(109371521, -), CAediting_499270(109371522, -), CAediting_499271(109371534, -), CAediting_499272(109371560, -), CAediting_499273(109371568, -), CAediting_499274(109371589, -), CAediting_499275(109372540, -), CAediting_499276(109372550, -), CAediting_499277(109372557, -), CAediting_499278(109372572, -), CAediting_499279(109372608, -), CAediting_499280(109372618, -), CAediting_499281(109372629, -), CAediting_499282(109372631, -), CAediting_499283(109372638, -), CAediting_499284(109372639, -), CAediting_499285(109372643, -), CAediting_499286(109372645, -), CAediting_499287(109372654, -), CAediting_499288(109372673, -), CAediting_499289(109372679, -), CAediting_499290(109372691, -), CAediting_499291(109372692, -), CAediting_499292(109372696, -), CAediting_499293(109372697, -), CAediting_499294(109375200, -), CAediting_499295(109375298, -), CAediting_499296(109375302, -), CAediting_499297(109375307, -), CAediting_499298(109375319, -), CAediting_499299(109375360, -), CAediting_499300(109375382, -), CAediting_499301(109375399, -), CAediting_499302(109375411, -), CAediting_499303(109375412, -), CAediting_499304(109375425, -), CAediting_499305(109375432, -), CAediting_499306(109375437, -), CAediting_499307(109375469, -), CAediting_499308(109375489, -), CAediting_499309(109375495, -), CAediting_499310(109375534, -), CAediting_499311(109375540, -), CAediting_499312(109375541, -), CAediting_499313(109375560, -), CAediting_499314(109375573, -), |
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RNA editing positional annotations for CD164 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_499252 | chr6_109371315_- | ncRNA_exonic |
CAediting_499253 | chr6_109371318_- | ncRNA_exonic |
CAediting_499254 | chr6_109371347_- | ncRNA_exonic |
CAediting_499255 | chr6_109371348_- | ncRNA_exonic |
CAediting_499256 | chr6_109371359_- | ncRNA_exonic |
CAediting_499257 | chr6_109371388_- | ncRNA_exonic |
CAediting_499258 | chr6_109371389_- | ncRNA_exonic |
CAediting_499259 | chr6_109371415_- | ncRNA_exonic |
CAediting_499260 | chr6_109371428_- | ncRNA_exonic |
CAediting_499261 | chr6_109371451_- | ncRNA_exonic |
CAediting_499262 | chr6_109371468_- | ncRNA_exonic |
CAediting_499263 | chr6_109371469_- | ncRNA_exonic |
CAediting_499264 | chr6_109371482_- | ncRNA_exonic |
CAediting_499265 | chr6_109371492_- | ncRNA_exonic |
CAediting_499266 | chr6_109371499_- | ncRNA_exonic |
CAediting_499267 | chr6_109371500_- | ncRNA_exonic |
CAediting_499268 | chr6_109371516_- | ncRNA_exonic |
CAediting_499269 | chr6_109371521_- | ncRNA_exonic |
CAediting_499270 | chr6_109371522_- | ncRNA_exonic |
CAediting_499271 | chr6_109371534_- | ncRNA_exonic |
CAediting_499272 | chr6_109371560_- | ncRNA_exonic |
CAediting_499273 | chr6_109371568_- | ncRNA_exonic |
CAediting_499274 | chr6_109371589_- | ncRNA_exonic |
CAediting_499275 | chr6_109372540_- | ncRNA_exonic |
CAediting_499276 | chr6_109372550_- | ncRNA_exonic |
CAediting_499277 | chr6_109372557_- | ncRNA_exonic |
CAediting_499278 | chr6_109372572_- | ncRNA_exonic |
CAediting_499279 | chr6_109372608_- | ncRNA_exonic |
CAediting_499280 | chr6_109372618_- | ncRNA_exonic |
CAediting_499281 | chr6_109372629_- | ncRNA_exonic |
CAediting_499282 | chr6_109372631_- | ncRNA_exonic |
CAediting_499283 | chr6_109372638_- | ncRNA_exonic |
CAediting_499284 | chr6_109372639_- | ncRNA_exonic |
CAediting_499285 | chr6_109372643_- | ncRNA_exonic |
CAediting_499286 | chr6_109372645_- | ncRNA_exonic |
CAediting_499287 | chr6_109372654_- | ncRNA_exonic |
CAediting_499288 | chr6_109372673_- | ncRNA_exonic |
CAediting_499289 | chr6_109372679_- | ncRNA_exonic |
CAediting_499290 | chr6_109372691_- | ncRNA_exonic |
CAediting_499291 | chr6_109372692_- | ncRNA_exonic |
CAediting_499292 | chr6_109372696_- | ncRNA_exonic |
CAediting_499293 | chr6_109372697_- | ncRNA_exonic |
CAediting_499294 | chr6_109375200_- | ncRNA_intronic |
CAediting_499295 | chr6_109375298_- | ncRNA_intronic |
CAediting_499296 | chr6_109375302_- | ncRNA_intronic |
CAediting_499297 | chr6_109375307_- | ncRNA_intronic |
CAediting_499298 | chr6_109375319_- | ncRNA_intronic |
CAediting_499299 | chr6_109375360_- | ncRNA_intronic |
CAediting_499300 | chr6_109375382_- | ncRNA_intronic |
CAediting_499301 | chr6_109375399_- | ncRNA_intronic |
CAediting_499302 | chr6_109375411_- | ncRNA_intronic |
CAediting_499303 | chr6_109375412_- | ncRNA_intronic |
CAediting_499304 | chr6_109375425_- | ncRNA_intronic |
CAediting_499305 | chr6_109375432_- | ncRNA_intronic |
CAediting_499306 | chr6_109375437_- | ncRNA_intronic |
CAediting_499307 | chr6_109375469_- | ncRNA_intronic |
CAediting_499308 | chr6_109375489_- | ncRNA_intronic |
CAediting_499309 | chr6_109375495_- | ncRNA_intronic |
CAediting_499310 | chr6_109375534_- | ncRNA_intronic |
CAediting_499311 | chr6_109375540_- | ncRNA_intronic |
CAediting_499312 | chr6_109375541_- | ncRNA_intronic |
CAediting_499313 | chr6_109375560_- | ncRNA_intronic |
CAediting_499314 | chr6_109375573_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_499252 | chr6_109371315_- | SINE | Alu | AluSz |
CAediting_499253 | chr6_109371318_- | SINE | Alu | AluSz |
CAediting_499254 | chr6_109371347_- | SINE | Alu | AluSz |
CAediting_499255 | chr6_109371348_- | SINE | Alu | AluSz |
CAediting_499256 | chr6_109371359_- | SINE | Alu | AluSz |
CAediting_499257 | chr6_109371388_- | SINE | Alu | AluSz |
CAediting_499258 | chr6_109371389_- | SINE | Alu | AluSz |
CAediting_499259 | chr6_109371415_- | SINE | Alu | AluSz |
CAediting_499260 | chr6_109371428_- | SINE | Alu | AluSz |
CAediting_499261 | chr6_109371451_- | SINE | Alu | AluSz |
CAediting_499262 | chr6_109371468_- | SINE | Alu | AluSz |
CAediting_499263 | chr6_109371469_- | SINE | Alu | AluSz |
CAediting_499264 | chr6_109371482_- | SINE | Alu | AluSz |
CAediting_499265 | chr6_109371492_- | SINE | Alu | AluSz |
CAediting_499266 | chr6_109371499_- | SINE | Alu | AluSz |
CAediting_499267 | chr6_109371500_- | SINE | Alu | AluSz |
CAediting_499268 | chr6_109371516_- | SINE | Alu | AluSz |
CAediting_499269 | chr6_109371521_- | SINE | Alu | AluSz |
CAediting_499270 | chr6_109371522_- | SINE | Alu | AluSz |
CAediting_499271 | chr6_109371534_- | SINE | Alu | AluSz |
CAediting_499294 | chr6_109375200_- | LINE | L1 | L1M5 |
CAediting_499299 | chr6_109375360_- | SINE | Alu | AluSx1 |
CAediting_499300 | chr6_109375382_- | SINE | Alu | AluSx1 |
CAediting_499301 | chr6_109375399_- | SINE | Alu | AluSx1 |
CAediting_499302 | chr6_109375411_- | SINE | Alu | AluSx1 |
CAediting_499303 | chr6_109375412_- | SINE | Alu | AluSx1 |
CAediting_499304 | chr6_109375425_- | SINE | Alu | AluSx1 |
CAediting_499305 | chr6_109375432_- | SINE | Alu | AluSx1 |
CAediting_499306 | chr6_109375437_- | SINE | Alu | AluSx1 |
CAediting_499307 | chr6_109375469_- | SINE | Alu | AluSx1 |
CAediting_499308 | chr6_109375489_- | SINE | Alu | AluSx1 |
CAediting_499309 | chr6_109375495_- | SINE | Alu | AluSx1 |
CAediting_499310 | chr6_109375534_- | SINE | Alu | AluSx1 |
CAediting_499311 | chr6_109375540_- | SINE | Alu | AluSx1 |
CAediting_499312 | chr6_109375541_- | SINE | Alu | AluSx1 |
CAediting_499313 | chr6_109375560_- | SINE | Alu | AluSx1 |
CAediting_499314 | chr6_109375573_- | SINE | Alu | AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for CD164 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_499307 | chr6_109375469_- | 109375450:109375472 | 3SS | 0+17i | ACTAATTTTTGTTTTTTTAGTAG | 5.88 | ACTGATTTTTGTTTTTTTAGTAG | 6.28 |
ES | CAediting_499307 | chr6_109375469_- | 109375447:109375469 | 3SS | 0+20i | AATTTTTGTTTTTTTAGTAGAGT | 3.79 | GATTTTTGTTTTTTTAGTAGAGT | 4 |
IR | CAediting_499307 | chr6_109375469_- | 109375447:109375469 | 3SS | 0+20i | AATTTTTGTTTTTTTAGTAGAGT | 3.79 | GATTTTTGTTTTTTTAGTAGAGT | 4 |
IR | CAediting_499307 | chr6_109375469_- | 109375450:109375472 | 3SS | 0+17i | ACTAATTTTTGTTTTTTTAGTAG | 5.88 | ACTGATTTTTGTTTTTTTAGTAG | 6.28 |
MEX_2 | CAediting_499307 | chr6_109375469_- | 109375450:109375472 | 3SS | 0+17i | ACTAATTTTTGTTTTTTTAGTAG | 5.88 | ACTGATTTTTGTTTTTTTAGTAG | 6.28 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CD164 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for CD164 |
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The effects of the RNA editing to the miRNA binding sites for CD164 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229413 | chr17_67471544_+ | ENSG00000135535.13 | ENST00000413644 | hsa-miR-548aa | 109367586 | 109367592 | 7mer-m8 | 109367585 | 109367609 | 140 | -7.83 |
CAediting_228905 | chr2_188297554_+ | ENSG00000135535.13 | ENST00000413644 | hsa-miR-561-3p | 109367314 | 109367320 | 7mer-m8 | 109367313 | 109367332 | 141 | -13.92 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000135535.13 | ENST00000324953 | hsa-miR-548aa | 109367586 | 109367592 | 7mer-m8 | 109367585 | 109367609 | 140 | -7.83 |
CAediting_228905 | chr2_188297554_+ | ENSG00000135535.13 | ENST00000324953 | hsa-miR-561-3p | 109367314 | 109367320 | 7mer-m8 | 109367313 | 109367332 | 141 | -13.92 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000135535.13 | ENST00000275080 | hsa-miR-548aa | 109367586 | 109367592 | 7mer-m8 | 109367585 | 109367609 | 140 | -7.83 |
CAediting_228905 | chr2_188297554_+ | ENSG00000135535.13 | ENST00000275080 | hsa-miR-561-3p | 109367314 | 109367320 | 7mer-m8 | 109367313 | 109367332 | 141 | -13.92 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688081 | chr9_63819627_+ | ENSG00000135535.13 | ENST00000324953 | hsa-miR-4477b | 109368579 | 109368585 | 7mer-m8 | 109368578 | 109368599 | 142 | -8.28 |
CAediting_688081 | chr9_63819627_+ | ENSG00000135535.13 | ENST00000275080 | hsa-miR-4477b | 109368579 | 109368585 | 7mer-m8 | 109368578 | 109368599 | 142 | -8.28 |
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The effects of the RNA editing to the stability of the RNA structures for CD164 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000415861.2 | retained_intron | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_499252 | ENST00000415861.2 | chr6_109371315_- | -1204.70 | -1199.50 | -1238.60 |
CAediting_499253 | ENST00000415861.2 | chr6_109371318_- | -1199.80 | -1199.50 | -1238.60 |
CAediting_499254 | ENST00000415861.2 | chr6_109371347_- | -1200.30 | -1199.50 | -1238.60 |
CAediting_499255 | ENST00000415861.2 | chr6_109371348_- | -1199.50 | -1199.50 | -1238.60 |
CAediting_499256 | ENST00000415861.2 | chr6_109371359_- | -1205.40 | -1199.50 | -1238.60 |
CAediting_499257 | ENST00000415861.2 | chr6_109371388_- | -1199.40 | -1199.50 | -1238.60 |
CAediting_499258 | ENST00000415861.2 | chr6_109371389_- | -1199.10 | -1199.50 | -1238.60 |
CAediting_499259 | ENST00000415861.2 | chr6_109371415_- | -1199.20 | -1199.50 | -1238.60 |
CAediting_499260 | ENST00000415861.2 | chr6_109371428_- | -1199.50 | -1199.50 | -1238.60 |
CAediting_499261 | ENST00000415861.2 | chr6_109371451_- | -1202.40 | -1199.50 | -1238.60 |
CAediting_499262 | ENST00000415861.2 | chr6_109371468_- | -1201.40 | -1199.50 | -1238.60 |
CAediting_499263 | ENST00000415861.2 | chr6_109371469_- | -1199.50 | -1199.50 | -1238.60 |
CAediting_499264 | ENST00000415861.2 | chr6_109371482_- | -1200.50 | -1199.50 | -1238.60 |
CAediting_499265 | ENST00000415861.2 | chr6_109371492_- | -1201.70 | -1199.50 | -1238.60 |
CAediting_499266 | ENST00000415861.2 | chr6_109371499_- | -1200.30 | -1199.50 | -1238.60 |
CAediting_499267 | ENST00000415861.2 | chr6_109371500_- | -1200.60 | -1199.50 | -1238.60 |
CAediting_499268 | ENST00000415861.2 | chr6_109371516_- | -1199.60 | -1199.50 | -1238.60 |
CAediting_499269 | ENST00000415861.2 | chr6_109371521_- | -1199.80 | -1199.50 | -1238.60 |
CAediting_499270 | ENST00000415861.2 | chr6_109371522_- | -1202.50 | -1199.50 | -1238.60 |
CAediting_499271 | ENST00000415861.2 | chr6_109371534_- | -1200.60 | -1199.50 | -1238.60 |
CAediting_499272 | ENST00000415861.2 | chr6_109371560_- | -1199.20 | -1199.50 | -1238.60 |
CAediting_499273 | ENST00000415861.2 | chr6_109371568_- | -1199.20 | -1199.50 | -1238.60 |
CAediting_499274 | ENST00000415861.2 | chr6_109371589_- | -1206.10 | -1199.50 | -1238.60 |
CAediting_499275 | ENST00000415861.2 | chr6_109372540_- | -1199.10 | -1199.50 | -1238.60 |
CAediting_499276 | ENST00000415861.2 | chr6_109372550_- | -1198.80 | -1199.50 | -1238.60 |
CAediting_499277 | ENST00000415861.2 | chr6_109372557_- | -1199.50 | -1199.50 | -1238.60 |
CAediting_499278 | ENST00000415861.2 | chr6_109372572_- | -1198.80 | -1199.50 | -1238.60 |
CAediting_499279 | ENST00000415861.2 | chr6_109372608_- | -1198.70 | -1199.50 | -1238.60 |
CAediting_499280 | ENST00000415861.2 | chr6_109372618_- | -1199.20 | -1199.50 | -1238.60 |
CAediting_499281 | ENST00000415861.2 | chr6_109372629_- | -1199.50 | -1199.50 | -1238.60 |
CAediting_499282 | ENST00000415861.2 | chr6_109372631_- | -1199.50 | -1199.50 | -1238.60 |
CAediting_499283 | ENST00000415861.2 | chr6_109372638_- | -1202.30 | -1199.50 | -1238.60 |
CAediting_499284 | ENST00000415861.2 | chr6_109372639_- | -1201.50 | -1199.50 | -1238.60 |
CAediting_499285 | ENST00000415861.2 | chr6_109372643_- | -1202.30 | -1199.50 | -1238.60 |
CAediting_499286 | ENST00000415861.2 | chr6_109372645_- | -1203.00 | -1199.50 | -1238.60 |
CAediting_499287 | ENST00000415861.2 | chr6_109372654_- | -1200.60 | -1199.50 | -1238.60 |
CAediting_499288 | ENST00000415861.2 | chr6_109372673_- | -1200.10 | -1199.50 | -1238.60 |
CAediting_499289 | ENST00000415861.2 | chr6_109372679_- | -1202.10 | -1199.50 | -1238.60 |
CAediting_499290 | ENST00000415861.2 | chr6_109372691_- | -1200.20 | -1199.50 | -1238.60 |
CAediting_499291 | ENST00000415861.2 | chr6_109372692_- | -1199.60 | -1199.50 | -1238.60 |
CAediting_499292 | ENST00000415861.2 | chr6_109372696_- | -1199.50 | -1199.50 | -1238.60 |
CAediting_499293 | ENST00000415861.2 | chr6_109372697_- | -1200.50 | -1199.50 | -1238.60 |
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Relation with ADAR for CD164 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for CD164 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for CD164 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CD164 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CD164 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
CD164 | C0000786 | Spontaneous abortion | 1 | CTD_human |
CD164 | C0000822 | Abortion, Tubal | 1 | CTD_human |
CD164 | C3711374 | Nonsyndromic Deafness | 1 | CLINGEN |
CD164 | C3830362 | Early Pregnancy Loss | 1 | CTD_human |
CD164 | C4283893 | DEAFNESS, AUTOSOMAL DOMINANT 66 | 1 | CLINGEN;CTD_human;GENOMICS_ENGLAND |
CD164 | C4552766 | Miscarriage | 1 | CTD_human |