CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: RNASET2 (CAeditome ID:8635)

Gene summary for RNASET2

check button Gene summary
Gene informationGene symbol

RNASET2

Gene ID

8635

Gene nameribonuclease T2
SynonymsRNASE6PL|bA514O12.3
Cytomap

6q27

Type of geneprotein-coding
Descriptionribonuclease T2ribonuclease 6
Modification date20210518
UniProtAcc

O00584

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
RNASET2

GO:0004540

Ribonuclease T2

22735700

RNASET2

GO:0006401

Ribonuclease T2

22735700

RNASET2

GO:0005615

Ribonuclease T2

16620762

RNASET2

GO:0005764

Ribonuclease T2

16620762

RNASET2

GO:0005788

Ribonuclease T2

16620762


Top

RNA A-to-I events for RNASET2

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000026297.14

check button RNA A-to-I editing events in Cancer.
CAediting_518309(166933474, -), CAediting_518310(166933478, -), CAediting_518311(166933555, -), CAediting_518312(166933615, -), CAediting_518313(166935003, -), CAediting_518314(166935127, -), CAediting_518315(166935129, -), CAediting_518316(166938451, -), CAediting_518317(166938515, -), CAediting_518318(166938732, -), CAediting_518319(166939071, -), CAediting_518320(166939077, -), CAediting_518321(166939089, -), CAediting_518322(166939117, -), CAediting_518323(166939129, -), CAediting_518324(166939131, -), CAediting_518325(166939154, -), CAediting_518326(166939169, -), CAediting_518327(166939185, -), CAediting_518328(166939194, -), CAediting_518329(166939222, -), CAediting_518330(166939234, -), CAediting_518331(166939250, -), CAediting_518332(166939329, -), CAediting_518333(166940259, -), CAediting_518334(166942110, -), CAediting_518335(166942113, -), CAediting_518336(166942118, -), CAediting_518337(166942125, -), CAediting_518338(166942145, -), CAediting_518339(166942150, -), CAediting_518340(166942158, -), CAediting_518341(166942161, -), CAediting_518342(166942164, -), CAediting_518343(166942174, -), CAediting_518344(166942181, -), CAediting_518345(166942190, -), CAediting_518346(166942191, -), CAediting_518347(166942199, -), CAediting_518348(166942206, -), CAediting_518349(166942217, -), CAediting_518350(166942226, -), CAediting_518351(166942231, -), CAediting_518352(166942241, -), CAediting_518353(166942248, -), CAediting_518354(166942266, -), CAediting_518355(166942277, -), CAediting_518356(166942280, -), CAediting_518357(166942290, -), CAediting_518358(166942303, -), CAediting_518359(166942342, -), CAediting_518360(166942523, -), CAediting_518361(166942730, -), CAediting_518362(166942737, -), CAediting_518363(166943852, -), CAediting_518364(166943856, -), CAediting_518365(166943877, -), CAediting_518366(166943879, -), CAediting_518367(166943940, -), CAediting_518368(166943954, -), CAediting_518369(166943957, -), CAediting_518370(166943963, -), CAediting_518371(166943971, -), CAediting_518372(166943972, -), CAediting_518373(166943992, -), CAediting_518374(166943996, -), CAediting_518375(166944020, -), CAediting_518376(166944094, -), CAediting_518377(166944105, -), CAediting_518378(166944118, -), CAediting_518379(166945605, -), CAediting_518380(166948228, -), CAediting_518381(166951047, -), CAediting_518382(166953682, -), CAediting_518383(166954797, -), CAediting_518384(166954835, -), CAediting_518385(166954908, -), CAediting_518386(166954944, -), CAediting_518387(166954987, -),

Top

RNA editing positional annotations for RNASET2 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_518309chr6_166933474_-ncRNA_exonic
CAediting_518310chr6_166933478_-ncRNA_exonic
CAediting_518311chr6_166933555_-ncRNA_exonic
CAediting_518312chr6_166933615_-ncRNA_exonic
CAediting_518313chr6_166935003_-ncRNA_exonic
CAediting_518314chr6_166935127_-ncRNA_intronic
CAediting_518315chr6_166935129_-ncRNA_intronic
CAediting_518316chr6_166938451_-ncRNA_intronic
CAediting_518317chr6_166938515_-ncRNA_intronic
CAediting_518318chr6_166938732_-exonic
CAediting_518319chr6_166939071_-ncRNA_intronic
CAediting_518320chr6_166939077_-ncRNA_intronic
CAediting_518321chr6_166939089_-ncRNA_intronic
CAediting_518322chr6_166939117_-ncRNA_intronic
CAediting_518323chr6_166939129_-ncRNA_intronic
CAediting_518324chr6_166939131_-ncRNA_intronic
CAediting_518325chr6_166939154_-ncRNA_intronic
CAediting_518326chr6_166939169_-ncRNA_intronic
CAediting_518327chr6_166939185_-ncRNA_intronic
CAediting_518328chr6_166939194_-ncRNA_intronic
CAediting_518329chr6_166939222_-ncRNA_intronic
CAediting_518330chr6_166939234_-ncRNA_intronic
CAediting_518331chr6_166939250_-ncRNA_intronic
CAediting_518332chr6_166939329_-ncRNA_intronic
CAediting_518333chr6_166940259_-ncRNA_intronic
CAediting_518334chr6_166942110_-ncRNA_intronic
CAediting_518335chr6_166942113_-ncRNA_intronic
CAediting_518336chr6_166942118_-ncRNA_intronic
CAediting_518337chr6_166942125_-ncRNA_intronic
CAediting_518338chr6_166942145_-ncRNA_intronic
CAediting_518339chr6_166942150_-ncRNA_intronic
CAediting_518340chr6_166942158_-ncRNA_intronic
CAediting_518341chr6_166942161_-ncRNA_intronic
CAediting_518342chr6_166942164_-ncRNA_intronic
CAediting_518343chr6_166942174_-ncRNA_intronic
CAediting_518344chr6_166942181_-ncRNA_intronic
CAediting_518345chr6_166942190_-ncRNA_intronic
CAediting_518346chr6_166942191_-ncRNA_intronic
CAediting_518347chr6_166942199_-ncRNA_intronic
CAediting_518348chr6_166942206_-ncRNA_intronic
CAediting_518349chr6_166942217_-ncRNA_intronic
CAediting_518350chr6_166942226_-ncRNA_intronic
CAediting_518351chr6_166942231_-ncRNA_intronic
CAediting_518352chr6_166942241_-ncRNA_intronic
CAediting_518353chr6_166942248_-ncRNA_intronic
CAediting_518354chr6_166942266_-ncRNA_intronic
CAediting_518355chr6_166942277_-ncRNA_intronic
CAediting_518356chr6_166942280_-ncRNA_intronic
CAediting_518357chr6_166942290_-ncRNA_intronic
CAediting_518358chr6_166942303_-ncRNA_intronic
CAediting_518359chr6_166942342_-ncRNA_intronic
CAediting_518360chr6_166942523_-ncRNA_intronic
CAediting_518361chr6_166942730_-ncRNA_intronic
CAediting_518362chr6_166942737_-ncRNA_intronic
CAediting_518363chr6_166943852_-ncRNA_intronic
CAediting_518364chr6_166943856_-ncRNA_intronic
CAediting_518365chr6_166943877_-ncRNA_intronic
CAediting_518366chr6_166943879_-ncRNA_intronic
CAediting_518367chr6_166943940_-ncRNA_intronic
CAediting_518368chr6_166943954_-ncRNA_intronic
CAediting_518369chr6_166943957_-ncRNA_intronic
CAediting_518370chr6_166943963_-ncRNA_intronic
CAediting_518371chr6_166943971_-ncRNA_intronic
CAediting_518372chr6_166943972_-ncRNA_intronic
CAediting_518373chr6_166943992_-ncRNA_intronic
CAediting_518374chr6_166943996_-ncRNA_exonic
CAediting_518375chr6_166944020_-ncRNA_exonic
CAediting_518376chr6_166944094_-ncRNA_intronic
CAediting_518377chr6_166944105_-ncRNA_intronic
CAediting_518378chr6_166944118_-ncRNA_intronic
CAediting_518379chr6_166945605_-ncRNA_intronic
CAediting_518380chr6_166948228_-ncRNA_intronic
CAediting_518381chr6_166951047_-ncRNA_intronic
CAediting_518382chr6_166953682_-ncRNA_intronic
CAediting_518383chr6_166954797_-ncRNA_intronic
CAediting_518384chr6_166954835_-ncRNA_intronic
CAediting_518385chr6_166954908_-ncRNA_intronic
CAediting_518386chr6_166954944_-ncRNA_intronic
CAediting_518387chr6_166954987_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_518309chr6_166933474_-SINEAluAluJr
CAediting_518310chr6_166933478_-SINEAluAluJr
CAediting_518311chr6_166933555_-SINEAluAluJr
CAediting_518312chr6_166933615_-SINEAluAluJr
CAediting_518319chr6_166939071_-SINEAluAluSq2
CAediting_518320chr6_166939077_-SINEAluAluSq2
CAediting_518321chr6_166939089_-SINEAluAluSq2
CAediting_518322chr6_166939117_-SINEAluAluSq2
CAediting_518323chr6_166939129_-SINEAluAluSq2
CAediting_518324chr6_166939131_-SINEAluAluSq2
CAediting_518325chr6_166939154_-SINEAluAluSq2
CAediting_518326chr6_166939169_-SINEAluAluSq2
CAediting_518327chr6_166939185_-SINEAluAluSq2
CAediting_518328chr6_166939194_-SINEAluAluSq2
CAediting_518329chr6_166939222_-SINEAluAluSq2
CAediting_518330chr6_166939234_-SINEAluAluSq2
CAediting_518331chr6_166939250_-SINEAluAluSq2
CAediting_518332chr6_166939329_-SINEAluAluSq2
CAediting_518334chr6_166942110_-SINEAluAluSz
CAediting_518335chr6_166942113_-SINEAluAluSz
CAediting_518336chr6_166942118_-SINEAluAluSz
CAediting_518337chr6_166942125_-SINEAluAluSz
CAediting_518338chr6_166942145_-SINEAluAluSz
CAediting_518339chr6_166942150_-SINEAluAluSz
CAediting_518340chr6_166942158_-SINEAluAluSz
CAediting_518341chr6_166942161_-SINEAluAluSz
CAediting_518342chr6_166942164_-SINEAluAluSz
CAediting_518343chr6_166942174_-SINEAluAluSz
CAediting_518344chr6_166942181_-SINEAluAluSz
CAediting_518345chr6_166942190_-SINEAluAluSz
CAediting_518346chr6_166942191_-SINEAluAluSz
CAediting_518347chr6_166942199_-SINEAluAluSz
CAediting_518348chr6_166942206_-SINEAluAluSz
CAediting_518349chr6_166942217_-SINEAluAluSz
CAediting_518350chr6_166942226_-SINEAluAluSz
CAediting_518351chr6_166942231_-SINEAluAluSz
CAediting_518352chr6_166942241_-SINEAluAluSz
CAediting_518353chr6_166942248_-SINEAluAluSz
CAediting_518354chr6_166942266_-SINEAluAluSz
CAediting_518355chr6_166942277_-SINEAluAluSz
CAediting_518356chr6_166942280_-SINEAluAluSz
CAediting_518357chr6_166942290_-SINEAluAluSz
CAediting_518358chr6_166942303_-SINEAluAluSz
CAediting_518359chr6_166942342_-SINEAluAluSz
CAediting_518360chr6_166942523_-SINEAluAluJo
CAediting_518361chr6_166942730_-SINEAluAluJo
CAediting_518362chr6_166942737_-SINEAluAluJo
CAediting_518363chr6_166943852_-SINEAluAluSc5
CAediting_518364chr6_166943856_-SINEAluAluSc5
CAediting_518365chr6_166943877_-SINEAluAluSc5
CAediting_518366chr6_166943879_-SINEAluAluSc5
CAediting_518367chr6_166943940_-SINEAluAluSc5
CAediting_518368chr6_166943954_-SINEAluAluSc5
CAediting_518369chr6_166943957_-SINEAluAluSc5
CAediting_518370chr6_166943963_-SINEAluAluSc5
CAediting_518371chr6_166943971_-SINEAluAluSc5
CAediting_518372chr6_166943972_-SINEAluAluSc5
CAediting_518373chr6_166943992_-SINEAluAluSc5
CAediting_518374chr6_166943996_-SINEAluAluSc5
CAediting_518375chr6_166944020_-SINEAluAluSc5
CAediting_518376chr6_166944094_-SINEAluAluSc5
CAediting_518377chr6_166944105_-SINEAluAluSc5
CAediting_518378chr6_166944118_-SINEAluAluSc5
CAediting_518379chr6_166945605_-SINEAluAluSp
CAediting_518380chr6_166948228_-SINEAluAluSx
CAediting_518381chr6_166951047_-LTRERVKLTR13
CAediting_518382chr6_166953682_-SINEAluAluJb
CAediting_518383chr6_166954797_-SINEAluAluSx
CAediting_518384chr6_166954835_-SINEAluAluSx
CAediting_518385chr6_166954908_-SINEAluAluSx
CAediting_518386chr6_166954944_-SINEAluAluSx
CAediting_518387chr6_166954987_-SINEAluAluSx

Top

RNA A-to-I editing events in the alternative splicing sites for RNASET2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000026297.14.RNASET2.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000026297.14.RNASET2.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for RNASET2

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for RNASET2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for RNASET2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_524911chr7_5495852_-ENSG00000026297.14ENST00000421787hsa-miR-589-3p1669435961669436027mer-m8166943595166943617145-16.46

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1229415chr17_67471547_+ENSG00000026297.14ENST00000421787hsa-miR-548aa1669433671669433737mer-m8166943366166943389144-8.42

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for RNASET2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000358165.6retained_intronSoverviewSoverview
ENST00000467705.5processed_transcriptSoverviewSoverview
ENST00000496851.5processed_transcriptSoverviewSoverview
ENST00000499370.5retained_intronSoverviewSoverview
ENST00000611959.1protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_518309ENST00000358165.6chr6_166933474_--906.10-905.10-909.60
CAediting_518310ENST00000358165.6chr6_166933478_--905.90-905.10-909.60
CAediting_518311ENST00000358165.6chr6_166933555_--905.10-905.10-909.60
CAediting_518312ENST00000358165.6chr6_166933615_--905.10-905.10-909.60
CAediting_518313ENST00000358165.6chr6_166935003_--905.10-905.10-909.60
CAediting_518318ENST00000358165.6chr6_166938732_--907.80-905.10-909.60
CAediting_518374ENST00000467705.5chr6_166943996_--169.70-168.00-169.00
CAediting_518375ENST00000467705.5chr6_166944020_--167.50-168.00-169.00
CAediting_518309ENST00000496851.5chr6_166933474_--286.40-285.40-287.70
CAediting_518310ENST00000496851.5chr6_166933478_--286.20-285.40-287.70
CAediting_518311ENST00000496851.5chr6_166933555_--285.40-285.40-287.70
CAediting_518312ENST00000496851.5chr6_166933615_--285.90-285.40-287.70
CAediting_518309ENST00000499370.5chr6_166933474_--690.60-689.60-690.90
CAediting_518310ENST00000499370.5chr6_166933478_--690.40-689.60-690.90
CAediting_518311ENST00000499370.5chr6_166933555_--689.60-689.60-690.90
CAediting_518312ENST00000499370.5chr6_166933615_--689.10-689.60-690.90
CAediting_518318ENST00000611959.1chr6_166938732_--493.90-491.00-493.90

Top

Relation with ADAR for RNASET2

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

Top

Relation with cancer stages for RNASET2

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

Top

Relation with survival for RNASET2

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for RNASET2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for RNASET2

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
RNASET2C2751843Leukoencephalopathy, Cystic, Without Megalencephaly4CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
RNASET2C0006111Brain Diseases1CTD_human
RNASET2C0018213Graves Disease1CTD_human
RNASET2C0024121Lung Neoplasms1CTD_human
RNASET2C0085584Encephalopathies1CTD_human
RNASET2C0242379Malignant neoplasm of lung1CTD_human
RNASET2C3714756Intellectual Disability1GENOMICS_ENGLAND