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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: HSD17B6 (CAeditome ID:8630)

Gene summary for HSD17B6

check button Gene summary
Gene informationGene symbol

HSD17B6

Gene ID

8630

Gene namehydroxysteroid 17-beta dehydrogenase 6
SynonymsHSE|RODH|SDR9C6
Cytomap

12q13.3

Type of geneprotein-coding
Description17-beta-hydroxysteroid dehydrogenase type 617-beta-HSD 617-beta-hydroxysteroid dehydrogenase type 6 variant 117-beta-hydroxysteroid dehydrogenase type 6 variant 217-beta-hydroxysteroid dehydrogenase type 6 variant 33(alpha->beta)-hydroxysteroid epime
Modification date20210518
UniProtAcc

O14756

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
HSD17B6

GO:0004745

17-beta-hydroxysteroid dehydrogenase type 6

10896656

HSD17B6

GO:0004745

17-beta-hydroxysteroid dehydrogenase type 6

11360992

HSD17B6

GO:0047023

17-beta-hydroxysteroid dehydrogenase type 6

10896656

HSD17B6

GO:0047023

17-beta-hydroxysteroid dehydrogenase type 6

11360992

HSD17B6

GO:0047024

17-beta-hydroxysteroid dehydrogenase type 6

11360992

HSD17B6

GO:0047024

17-beta-hydroxysteroid dehydrogenase type 6

11513953

HSD17B6

GO:0047044

17-beta-hydroxysteroid dehydrogenase type 6

11360992

HSD17B6

GO:0062175

17-beta-hydroxysteroid dehydrogenase type 6

10896656

HSD17B6

GO:0062175

17-beta-hydroxysteroid dehydrogenase type 6

11360992


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RNA A-to-I events for HSD17B6

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000025423.10
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_898662(56762899, +), CAediting_898663(56763818, +), CAediting_898664(56763821, +), CAediting_898665(56763853, +), CAediting_898666(56763858, +), CAediting_898667(56763882, +), CAediting_898668(56763884, +), CAediting_898669(56763887, +), CAediting_898670(56763890, +), CAediting_898671(56763892, +), CAediting_898672(56763903, +), CAediting_898673(56763905, +), CAediting_898674(56763906, +), CAediting_898675(56763907, +), CAediting_898676(56763908, +), CAediting_898677(56763909, +), CAediting_898678(56763912, +), CAediting_898679(56763915, +), CAediting_898680(56763917, +), CAediting_898681(56763922, +), CAediting_898682(56763926, +), CAediting_898683(56763940, +), CAediting_898684(56763954, +), CAediting_898685(56763958, +), CAediting_898686(56763984, +), CAediting_898687(56763989, +), CAediting_898688(56763994, +), CAediting_898689(56764008, +), CAediting_898690(56764010, +), CAediting_898691(56764014, +), CAediting_898692(56764021, +), CAediting_898693(56764044, +), CAediting_898694(56764830, +), CAediting_898695(56764856, +), CAediting_898696(56764954, +), CAediting_898697(56765280, +), CAediting_898698(56765337, +), CAediting_898699(56765521, +), CAediting_898700(56765541, +), CAediting_898701(56765546, +), CAediting_898702(56765556, +), CAediting_898703(56765561, +), CAediting_898704(56765562, +), CAediting_898705(56765565, +), CAediting_898706(56765577, +), CAediting_898707(56765578, +), CAediting_898708(56765584, +), CAediting_898709(56765591, +), CAediting_898710(56765629, +), CAediting_898711(56765641, +), CAediting_898712(56765648, +), CAediting_898713(56765651, +), CAediting_898714(56765677, +), CAediting_898715(56765686, +), CAediting_898716(56765695, +), CAediting_898717(56765704, +), CAediting_898718(56765721, +), CAediting_898719(56765746, +), CAediting_898720(56765754, +), CAediting_898721(56765759, +), CAediting_898722(56765768, +), CAediting_898723(56765769, +), CAediting_898724(56765781, +), CAediting_898725(56765784, +), CAediting_898726(56772485, +), CAediting_898727(56773746, +), CAediting_898728(56775956, +), CAediting_898729(56776006, +), CAediting_898730(56776186, +), CAediting_898731(56776355, +), CAediting_898732(56776384, +), CAediting_898733(56776404, +), CAediting_898734(56776405, +), CAediting_898735(56776417, +), CAediting_898736(56776596, +), CAediting_898737(56778857, +), CAediting_898738(56778949, +), CAediting_898739(56779168, +), CAediting_898740(56779192, +), CAediting_898741(56779204, +), CAediting_898742(56779268, +), CAediting_898743(56780597, +), CAediting_898744(56780750, +), CAediting_898745(56780751, +), CAediting_898746(56782522, +), CAediting_898747(56782535, +), CAediting_898748(56782595, +), CAediting_898749(56786389, +), CAediting_898750(56786430, +), CAediting_898751(56786654, +), CAediting_898752(56786704, +), CAediting_898753(56786730, +), CAediting_898754(56786748, +), CAediting_898755(56786769, +), CAediting_898756(56786833, +), CAediting_898757(56786836, +),

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RNA editing positional annotations for HSD17B6 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_898662chr12_56762899_+ncRNA_intronic
CAediting_898663chr12_56763818_+ncRNA_intronic
CAediting_898664chr12_56763821_+ncRNA_intronic
CAediting_898665chr12_56763853_+ncRNA_intronic
CAediting_898666chr12_56763858_+ncRNA_intronic
CAediting_898667chr12_56763882_+ncRNA_intronic
CAediting_898668chr12_56763884_+ncRNA_intronic
CAediting_898669chr12_56763887_+ncRNA_intronic
CAediting_898670chr12_56763890_+ncRNA_intronic
CAediting_898671chr12_56763892_+ncRNA_intronic
CAediting_898672chr12_56763903_+ncRNA_intronic
CAediting_898673chr12_56763905_+ncRNA_intronic
CAediting_898674chr12_56763906_+ncRNA_intronic
CAediting_898675chr12_56763907_+ncRNA_intronic
CAediting_898676chr12_56763908_+ncRNA_intronic
CAediting_898677chr12_56763909_+ncRNA_intronic
CAediting_898678chr12_56763912_+ncRNA_intronic
CAediting_898679chr12_56763915_+ncRNA_intronic
CAediting_898680chr12_56763917_+ncRNA_intronic
CAediting_898681chr12_56763922_+ncRNA_intronic
CAediting_898682chr12_56763926_+ncRNA_intronic
CAediting_898683chr12_56763940_+ncRNA_intronic
CAediting_898684chr12_56763954_+ncRNA_intronic
CAediting_898685chr12_56763958_+ncRNA_intronic
CAediting_898686chr12_56763984_+ncRNA_intronic
CAediting_898687chr12_56763989_+ncRNA_intronic
CAediting_898688chr12_56763994_+ncRNA_intronic
CAediting_898689chr12_56764008_+ncRNA_intronic
CAediting_898690chr12_56764010_+ncRNA_intronic
CAediting_898691chr12_56764014_+ncRNA_intronic
CAediting_898692chr12_56764021_+ncRNA_intronic
CAediting_898693chr12_56764044_+ncRNA_intronic
CAediting_898694chr12_56764830_+ncRNA_intronic
CAediting_898695chr12_56764856_+ncRNA_intronic
CAediting_898696chr12_56764954_+ncRNA_intronic
CAediting_898697chr12_56765280_+ncRNA_intronic
CAediting_898698chr12_56765337_+ncRNA_intronic
CAediting_898699chr12_56765521_+ncRNA_intronic
CAediting_898700chr12_56765541_+ncRNA_intronic
CAediting_898701chr12_56765546_+ncRNA_intronic
CAediting_898702chr12_56765556_+ncRNA_intronic
CAediting_898703chr12_56765561_+ncRNA_intronic
CAediting_898704chr12_56765562_+ncRNA_intronic
CAediting_898705chr12_56765565_+ncRNA_intronic
CAediting_898706chr12_56765577_+ncRNA_intronic
CAediting_898707chr12_56765578_+ncRNA_intronic
CAediting_898708chr12_56765584_+ncRNA_intronic
CAediting_898709chr12_56765591_+ncRNA_intronic
CAediting_898710chr12_56765629_+ncRNA_intronic
CAediting_898711chr12_56765641_+ncRNA_intronic
CAediting_898712chr12_56765648_+ncRNA_intronic
CAediting_898713chr12_56765651_+ncRNA_intronic
CAediting_898714chr12_56765677_+ncRNA_intronic
CAediting_898715chr12_56765686_+ncRNA_intronic
CAediting_898716chr12_56765695_+ncRNA_intronic
CAediting_898717chr12_56765704_+ncRNA_intronic
CAediting_898718chr12_56765721_+ncRNA_intronic
CAediting_898719chr12_56765746_+ncRNA_intronic
CAediting_898720chr12_56765754_+ncRNA_intronic
CAediting_898721chr12_56765759_+ncRNA_intronic
CAediting_898722chr12_56765768_+ncRNA_intronic
CAediting_898723chr12_56765769_+ncRNA_intronic
CAediting_898724chr12_56765781_+ncRNA_intronic
CAediting_898725chr12_56765784_+ncRNA_intronic
CAediting_898726chr12_56772485_+intronic
CAediting_898727chr12_56773746_+intronic
CAediting_898728chr12_56775956_+intronic
CAediting_898729chr12_56776006_+intronic
CAediting_898730chr12_56776186_+intronic
CAediting_898731chr12_56776355_+intronic
CAediting_898732chr12_56776384_+intronic
CAediting_898733chr12_56776404_+intronic
CAediting_898734chr12_56776405_+intronic
CAediting_898735chr12_56776417_+intronic
CAediting_898736chr12_56776596_+intronic
CAediting_898737chr12_56778857_+intronic
CAediting_898738chr12_56778949_+intronic
CAediting_898739chr12_56779168_+intronic
CAediting_898740chr12_56779192_+intronic
CAediting_898741chr12_56779204_+intronic
CAediting_898742chr12_56779268_+intronic
CAediting_898743chr12_56780597_+intronic
CAediting_898744chr12_56780750_+intronic
CAediting_898745chr12_56780751_+intronic
CAediting_898746chr12_56782522_+intronic
CAediting_898747chr12_56782535_+intronic
CAediting_898748chr12_56782595_+intronic
CAediting_898749chr12_56786389_+ncRNA_intronic
CAediting_898750chr12_56786430_+ncRNA_intronic
CAediting_898751chr12_56786654_+ncRNA_intronic
CAediting_898752chr12_56786704_+ncRNA_intronic
CAediting_898753chr12_56786730_+ncRNA_intronic
CAediting_898754chr12_56786748_+ncRNA_intronic
CAediting_898755chr12_56786769_+ncRNA_intronic
CAediting_898756chr12_56786833_+ncRNA_intronic
CAediting_898757chr12_56786836_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_898662chr12_56762899_+SINEAluAluSx1
CAediting_898663chr12_56763818_+SINEAluAluJb
CAediting_898664chr12_56763821_+SINEAluAluJb
CAediting_898665chr12_56763853_+SINEAluAluJb
CAediting_898666chr12_56763858_+SINEAluAluJb
CAediting_898667chr12_56763882_+SINEAluAluJb
CAediting_898668chr12_56763884_+SINEAluAluJb
CAediting_898669chr12_56763887_+SINEAluAluJb
CAediting_898670chr12_56763890_+SINEAluAluJb
CAediting_898671chr12_56763892_+SINEAluAluJb
CAediting_898672chr12_56763903_+SINEAluAluJb
CAediting_898673chr12_56763905_+SINEAluAluJb
CAediting_898674chr12_56763906_+SINEAluAluJb
CAediting_898675chr12_56763907_+SINEAluAluJb
CAediting_898676chr12_56763908_+SINEAluAluJb
CAediting_898677chr12_56763909_+SINEAluAluJb
CAediting_898678chr12_56763912_+SINEAluAluJb
CAediting_898679chr12_56763915_+SINEAluAluJb
CAediting_898680chr12_56763917_+SINEAluAluJb
CAediting_898681chr12_56763922_+SINEAluAluJb
CAediting_898682chr12_56763926_+SINEAluAluJb
CAediting_898683chr12_56763940_+SINEAluAluJb
CAediting_898684chr12_56763954_+SINEAluAluJb
CAediting_898685chr12_56763958_+SINEAluAluJb
CAediting_898686chr12_56763984_+SINEAluAluJb
CAediting_898687chr12_56763989_+SINEAluAluJb
CAediting_898688chr12_56763994_+SINEAluAluJb
CAediting_898689chr12_56764008_+SINEAluAluJb
CAediting_898690chr12_56764010_+SINEAluAluJb
CAediting_898691chr12_56764014_+SINEAluAluJb
CAediting_898692chr12_56764021_+SINEAluAluJb
CAediting_898693chr12_56764044_+SINEAluAluJb
CAediting_898694chr12_56764830_+SINEAluAluSx1
CAediting_898695chr12_56764856_+SINEAluAluSx1
CAediting_898696chr12_56764954_+SINEAluAluSx1
CAediting_898697chr12_56765280_+SINEAluAluSx4
CAediting_898698chr12_56765337_+SINEAluAluSx4
CAediting_898699chr12_56765521_+SINEAluAluJb
CAediting_898700chr12_56765541_+SINEAluAluJb
CAediting_898701chr12_56765546_+SINEAluAluJb
CAediting_898702chr12_56765556_+SINEAluAluJb
CAediting_898703chr12_56765561_+SINEAluAluJb
CAediting_898704chr12_56765562_+SINEAluAluJb
CAediting_898705chr12_56765565_+SINEAluAluJb
CAediting_898706chr12_56765577_+SINEAluAluJb
CAediting_898707chr12_56765578_+SINEAluAluJb
CAediting_898708chr12_56765584_+SINEAluAluJb
CAediting_898709chr12_56765591_+SINEAluAluJb
CAediting_898710chr12_56765629_+SINEAluAluJb
CAediting_898711chr12_56765641_+SINEAluAluJb
CAediting_898712chr12_56765648_+SINEAluAluJb
CAediting_898713chr12_56765651_+SINEAluAluJb
CAediting_898714chr12_56765677_+SINEAluAluJb
CAediting_898715chr12_56765686_+SINEAluAluJb
CAediting_898716chr12_56765695_+SINEAluAluJb
CAediting_898717chr12_56765704_+SINEAluAluJb
CAediting_898718chr12_56765721_+SINEAluAluJb
CAediting_898719chr12_56765746_+SINEAluAluJb
CAediting_898720chr12_56765754_+SINEAluAluJb
CAediting_898721chr12_56765759_+SINEAluAluJb
CAediting_898722chr12_56765768_+SINEAluAluJb
CAediting_898723chr12_56765769_+SINEAluAluJb
CAediting_898724chr12_56765781_+SINEAluAluJb
CAediting_898725chr12_56765784_+SINEAluAluJb
CAediting_898726chr12_56772485_+SINEAluAluSq2
CAediting_898727chr12_56773746_+LINEL2L2c
CAediting_898728chr12_56775956_+SINEAluAluSq2
CAediting_898729chr12_56776006_+SINEAluAluSq2
CAediting_898730chr12_56776186_+SINEAluAluSq2
CAediting_898731chr12_56776355_+SINEAluAluJb
CAediting_898732chr12_56776384_+SINEAluAluJb
CAediting_898733chr12_56776404_+SINEAluAluJb
CAediting_898734chr12_56776405_+SINEAluAluJb
CAediting_898735chr12_56776417_+SINEAluAluJb
CAediting_898736chr12_56776596_+SINEAluAluJb
CAediting_898737chr12_56778857_+SINEAluAluY
CAediting_898738chr12_56778949_+SINEAluAluY
CAediting_898739chr12_56779168_+SINEAluAluJr4
CAediting_898740chr12_56779192_+SINEAluAluJr4
CAediting_898741chr12_56779204_+SINEAluAluJr4
CAediting_898742chr12_56779268_+SINEAluAluJr4
CAediting_898743chr12_56780597_+SINEAluAluYe5
CAediting_898744chr12_56780750_+SINEAluAluYe5
CAediting_898745chr12_56780751_+SINEAluAluYe5
CAediting_898746chr12_56782522_+SINEAluAluJb
CAediting_898747chr12_56782535_+SINEAluAluJb
CAediting_898748chr12_56782595_+SINEAluAluJb
CAediting_898749chr12_56786389_+SINEAluAluSz
CAediting_898750chr12_56786430_+SINEAluAluSz
CAediting_898751chr12_56786654_+SINEAluAluJb
CAediting_898752chr12_56786704_+SINEAluAluJb
CAediting_898753chr12_56786730_+SINEAluAluJb
CAediting_898754chr12_56786748_+SINEAluAluJb
CAediting_898755chr12_56786769_+SINEAluAluJb
CAediting_898756chr12_56786833_+SINEAluAluJb
CAediting_898757chr12_56786836_+SINEAluAluJb

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RNA A-to-I editing events in the alternative splicing sites for HSD17B6

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_898699chr12_56765521_+56765502:567655243SS0+1iTTTATTAATTTTTCCAAACAGGG-12.02TTTATTAATTTTTCCAAACGGGG-3.27
ESCAediting_898714chr12_56765677_+56765676:567656983SS0+19iTAGTTTTTGTATTTTTTGTAGAG-15.46TGGTTTTTGTATTTTTTGTAGAG-13.59
ESCAediting_898715chr12_56765686_+56765676:567656983SS0+10iTAGTTTTTGTATTTTTTGTAGAG-15.46TAGTTTTTGTGTTTTTTGTAGAG-14.41
ESCAediting_898716chr12_56765695_+56765676:567656983SS0+1iTAGTTTTTGTATTTTTTGTAGAG-15.46TAGTTTTTGTATTTTTTGTGGAG-6.71

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000025423.10.HSD17B6.
boxplot

check button Correlation between RNA A-to-I editing and PSI for ENSG00000025423.10.HSD17B6.
boxplot

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HSD17B6

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for HSD17B6

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for HSD17B6

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HSD17B6

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for HSD17B6

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LIHCCAediting_898701chr12_56765546_+0.0002899570492864870.289081784967693....
LIHCCAediting_898702chr12_56765556_+0.03415800342349530.185238688208189....

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Relation with cancer stages for HSD17B6

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
LIHCpathologic_stageCAediting_898711chr12_56765641_+0.000241993553371246-0.242926575783517
LIHCpathologic_stageCAediting_898714chr12_56765677_+0.0298579228245363-0.151376308322296

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Relation with survival for HSD17B6

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LIHCCAediting_898711chr12_56765641_+0.002243553871783430.0015956727.9342

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RelatedDrugs for HSD17B6

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for HSD17B6

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
HSD17B6C0023893Liver Cirrhosis, Experimental1CTD_human