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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: NKD1 (CAeditome ID:85407) |
Gene summary for NKD1 |
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Gene information | Gene symbol | NKD1 | Gene ID | 85407 |
Gene name | NKD inhibitor of WNT signaling pathway 1 | |
Synonyms | Naked1 | |
Cytomap | 16q12.1 | |
Type of gene | protein-coding | |
Description | protein naked cuticle homolog 1Dvl-binding proteinNKD1, WNT signaling pathway inhibitornaked cuticle homolog 1naked cuticle-1naked-1 | |
Modification date | 20210518 | |
UniProtAcc | Q969G9 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
NKD1 | GO:0000159 | Protein naked cuticle homolog 1 | 15687260 |
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RNA A-to-I events for NKD1 |
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CAediting_1115605(50554758, +), CAediting_1115606(50558788, +), CAediting_1115607(50558789, +), CAediting_1115608(50558794, +), CAediting_1115609(50558858, +), CAediting_1115610(50558859, +), CAediting_1115611(50576672, +), CAediting_1115612(50576701, +), CAediting_1115613(50576702, +), CAediting_1115614(50576703, +), CAediting_1115615(50576706, +), CAediting_1115616(50576711, +), CAediting_1115617(50576722, +), CAediting_1115618(50576727, +), CAediting_1115619(50576774, +), CAediting_1115620(50576776, +), CAediting_1115621(50576798, +), CAediting_1115622(50576801, +), CAediting_1115623(50576802, +), CAediting_1115624(50576810, +), CAediting_1115625(50576813, +), CAediting_1115626(50576814, +), CAediting_1115627(50576819, +), CAediting_1115628(50576881, +), CAediting_1115629(50577275, +), CAediting_1115630(50577291, +), CAediting_1115631(50577292, +), CAediting_1115632(50577306, +), CAediting_1115633(50577325, +), CAediting_1115634(50577326, +), CAediting_1115635(50577335, +), CAediting_1115636(50577359, +), CAediting_1115637(50577370, +), CAediting_1115638(50577371, +), CAediting_1115639(50577381, +), CAediting_1115640(50577384, +), CAediting_1115641(50577400, +), CAediting_1115642(50577403, +), CAediting_1115643(50577404, +), CAediting_1115644(50577432, +), CAediting_1115645(50580373, +), CAediting_1115646(50580374, +), CAediting_1115647(50580404, +), CAediting_1115648(50580418, +), CAediting_1115649(50580419, +), CAediting_1115650(50580428, +), CAediting_1115651(50580443, +), CAediting_1115652(50580466, +), CAediting_1115653(50580471, +), CAediting_1115654(50580472, +), CAediting_1115655(50580480, +), CAediting_1115656(50580487, +), CAediting_1115657(50580510, +), CAediting_1115658(50581394, +), CAediting_1115659(50581547, +), CAediting_1115660(50593827, +), CAediting_1115661(50623121, +), CAediting_1115662(50623122, +), CAediting_1115663(50623142, +), CAediting_1115664(50623159, +), CAediting_1115665(50623257, +), CAediting_1115666(50623281, +), CAediting_1115667(50623286, +), CAediting_1115668(50623288, +), CAediting_1115669(50623290, +), CAediting_1115670(50623306, +), CAediting_1115671(50629225, +), CAediting_1115672(50629650, +), CAediting_1115673(50629656, +), CAediting_1115674(50637312, +), CAediting_1115675(50637318, +), CAediting_1115676(50637330, +), CAediting_1115677(50637344, +), CAediting_1115678(50637352, +), CAediting_1115679(50637406, +), CAediting_1115680(50637411, +), CAediting_1115681(50637421, +), CAediting_1115682(50637470, +), CAediting_1115683(50637509, +), CAediting_1115684(50637518, +), CAediting_1115685(50637525, +), |
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RNA editing positional annotations for NKD1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1115605 | chr16_50554758_+ | ncRNA_intronic |
CAediting_1115606 | chr16_50558788_+ | ncRNA_intronic |
CAediting_1115607 | chr16_50558789_+ | ncRNA_intronic |
CAediting_1115608 | chr16_50558794_+ | ncRNA_intronic |
CAediting_1115609 | chr16_50558858_+ | ncRNA_intronic |
CAediting_1115610 | chr16_50558859_+ | ncRNA_intronic |
CAediting_1115611 | chr16_50576672_+ | ncRNA_intronic |
CAediting_1115612 | chr16_50576701_+ | ncRNA_intronic |
CAediting_1115613 | chr16_50576702_+ | ncRNA_intronic |
CAediting_1115614 | chr16_50576703_+ | ncRNA_intronic |
CAediting_1115615 | chr16_50576706_+ | ncRNA_intronic |
CAediting_1115616 | chr16_50576711_+ | ncRNA_intronic |
CAediting_1115617 | chr16_50576722_+ | ncRNA_intronic |
CAediting_1115618 | chr16_50576727_+ | ncRNA_intronic |
CAediting_1115619 | chr16_50576774_+ | ncRNA_intronic |
CAediting_1115620 | chr16_50576776_+ | ncRNA_intronic |
CAediting_1115621 | chr16_50576798_+ | ncRNA_intronic |
CAediting_1115622 | chr16_50576801_+ | ncRNA_intronic |
CAediting_1115623 | chr16_50576802_+ | ncRNA_intronic |
CAediting_1115624 | chr16_50576810_+ | ncRNA_intronic |
CAediting_1115625 | chr16_50576813_+ | ncRNA_intronic |
CAediting_1115626 | chr16_50576814_+ | ncRNA_intronic |
CAediting_1115627 | chr16_50576819_+ | ncRNA_intronic |
CAediting_1115628 | chr16_50576881_+ | ncRNA_intronic |
CAediting_1115629 | chr16_50577275_+ | ncRNA_intronic |
CAediting_1115630 | chr16_50577291_+ | ncRNA_intronic |
CAediting_1115631 | chr16_50577292_+ | ncRNA_intronic |
CAediting_1115632 | chr16_50577306_+ | ncRNA_intronic |
CAediting_1115633 | chr16_50577325_+ | ncRNA_intronic |
CAediting_1115634 | chr16_50577326_+ | ncRNA_intronic |
CAediting_1115635 | chr16_50577335_+ | ncRNA_intronic |
CAediting_1115636 | chr16_50577359_+ | ncRNA_intronic |
CAediting_1115637 | chr16_50577370_+ | ncRNA_intronic |
CAediting_1115638 | chr16_50577371_+ | ncRNA_intronic |
CAediting_1115639 | chr16_50577381_+ | ncRNA_intronic |
CAediting_1115640 | chr16_50577384_+ | ncRNA_intronic |
CAediting_1115641 | chr16_50577400_+ | ncRNA_intronic |
CAediting_1115642 | chr16_50577403_+ | ncRNA_intronic |
CAediting_1115643 | chr16_50577404_+ | ncRNA_intronic |
CAediting_1115644 | chr16_50577432_+ | ncRNA_intronic |
CAediting_1115645 | chr16_50580373_+ | ncRNA_intronic |
CAediting_1115646 | chr16_50580374_+ | ncRNA_intronic |
CAediting_1115647 | chr16_50580404_+ | ncRNA_intronic |
CAediting_1115648 | chr16_50580418_+ | ncRNA_intronic |
CAediting_1115649 | chr16_50580419_+ | ncRNA_intronic |
CAediting_1115650 | chr16_50580428_+ | ncRNA_intronic |
CAediting_1115651 | chr16_50580443_+ | ncRNA_intronic |
CAediting_1115652 | chr16_50580466_+ | ncRNA_intronic |
CAediting_1115653 | chr16_50580471_+ | ncRNA_intronic |
CAediting_1115654 | chr16_50580472_+ | ncRNA_intronic |
CAediting_1115655 | chr16_50580480_+ | ncRNA_intronic |
CAediting_1115656 | chr16_50580487_+ | ncRNA_intronic |
CAediting_1115657 | chr16_50580510_+ | ncRNA_intronic |
CAediting_1115658 | chr16_50581394_+ | ncRNA_intronic |
CAediting_1115659 | chr16_50581547_+ | ncRNA_intronic |
CAediting_1115660 | chr16_50593827_+ | ncRNA_intronic |
CAediting_1115661 | chr16_50623121_+ | intronic |
CAediting_1115662 | chr16_50623122_+ | intronic |
CAediting_1115663 | chr16_50623142_+ | intronic |
CAediting_1115664 | chr16_50623159_+ | intronic |
CAediting_1115665 | chr16_50623257_+ | intronic |
CAediting_1115666 | chr16_50623281_+ | intronic |
CAediting_1115667 | chr16_50623286_+ | intronic |
CAediting_1115668 | chr16_50623288_+ | intronic |
CAediting_1115669 | chr16_50623290_+ | intronic |
CAediting_1115670 | chr16_50623306_+ | intronic |
CAediting_1115671 | chr16_50629225_+ | ncRNA_intronic |
CAediting_1115672 | chr16_50629650_+ | ncRNA_intronic |
CAediting_1115673 | chr16_50629656_+ | ncRNA_intronic |
CAediting_1115674 | chr16_50637312_+ | UTR3 |
CAediting_1115675 | chr16_50637318_+ | UTR3 |
CAediting_1115676 | chr16_50637330_+ | UTR3 |
CAediting_1115677 | chr16_50637344_+ | UTR3 |
CAediting_1115678 | chr16_50637352_+ | UTR3 |
CAediting_1115679 | chr16_50637406_+ | UTR3 |
CAediting_1115680 | chr16_50637411_+ | UTR3 |
CAediting_1115681 | chr16_50637421_+ | UTR3 |
CAediting_1115682 | chr16_50637470_+ | UTR3 |
CAediting_1115683 | chr16_50637509_+ | UTR3 |
CAediting_1115684 | chr16_50637518_+ | UTR3 |
CAediting_1115685 | chr16_50637525_+ | UTR3 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1115605 | chr16_50554758_+ | SINE | Alu | AluJr |
CAediting_1115606 | chr16_50558788_+ | SINE | Alu | AluSq2 |
CAediting_1115607 | chr16_50558789_+ | SINE | Alu | AluSq2 |
CAediting_1115608 | chr16_50558794_+ | SINE | Alu | AluSq2 |
CAediting_1115609 | chr16_50558858_+ | SINE | Alu | AluSq2 |
CAediting_1115610 | chr16_50558859_+ | SINE | Alu | AluSq2 |
CAediting_1115611 | chr16_50576672_+ | LINE | L1 | L1MA10 |
CAediting_1115612 | chr16_50576701_+ | LINE | L1 | L1MA10 |
CAediting_1115613 | chr16_50576702_+ | LINE | L1 | L1MA10 |
CAediting_1115614 | chr16_50576703_+ | LINE | L1 | L1MA10 |
CAediting_1115615 | chr16_50576706_+ | LINE | L1 | L1MA10 |
CAediting_1115616 | chr16_50576711_+ | LINE | L1 | L1MA10 |
CAediting_1115617 | chr16_50576722_+ | LINE | L1 | L1MA10 |
CAediting_1115618 | chr16_50576727_+ | LINE | L1 | L1MA10 |
CAediting_1115633 | chr16_50577325_+ | LINE | L1 | L1MA10 |
CAediting_1115634 | chr16_50577326_+ | LINE | L1 | L1MA10 |
CAediting_1115635 | chr16_50577335_+ | LINE | L1 | L1MA10 |
CAediting_1115636 | chr16_50577359_+ | LINE | L1 | L1MA10 |
CAediting_1115637 | chr16_50577370_+ | LINE | L1 | L1MA10 |
CAediting_1115638 | chr16_50577371_+ | LINE | L1 | L1MA10 |
CAediting_1115639 | chr16_50577381_+ | LINE | L1 | L1MA10 |
CAediting_1115640 | chr16_50577384_+ | LINE | L1 | L1MA10 |
CAediting_1115641 | chr16_50577400_+ | LINE | L1 | L1MA10 |
CAediting_1115642 | chr16_50577403_+ | LINE | L1 | L1MA10 |
CAediting_1115643 | chr16_50577404_+ | LINE | L1 | L1MA10 |
CAediting_1115644 | chr16_50577432_+ | LINE | L1 | L1MA10 |
CAediting_1115660 | chr16_50593827_+ | DNA | hAT-Blackjack | MER53 |
CAediting_1115661 | chr16_50623121_+ | LINE | L2 | L2b |
CAediting_1115662 | chr16_50623122_+ | LINE | L2 | L2b |
CAediting_1115663 | chr16_50623142_+ | LINE | L2 | L2b |
CAediting_1115664 | chr16_50623159_+ | LINE | L2 | L2b |
CAediting_1115671 | chr16_50629225_+ | SINE | Alu | AluJb |
CAediting_1115672 | chr16_50629650_+ | SINE | Alu | FRAM |
CAediting_1115673 | chr16_50629656_+ | SINE | Alu | FRAM |
CAediting_1115674 | chr16_50637312_+ | SINE | Alu | AluSx |
CAediting_1115675 | chr16_50637318_+ | SINE | Alu | AluSx |
CAediting_1115676 | chr16_50637330_+ | SINE | Alu | AluSx |
CAediting_1115677 | chr16_50637344_+ | SINE | Alu | AluSx |
CAediting_1115678 | chr16_50637352_+ | SINE | Alu | AluSx |
CAediting_1115679 | chr16_50637406_+ | SINE | Alu | AluSx |
CAediting_1115680 | chr16_50637411_+ | SINE | Alu | AluSx |
CAediting_1115681 | chr16_50637421_+ | SINE | Alu | AluSx |
CAediting_1115682 | chr16_50637470_+ | SINE | Alu | AluSx |
CAediting_1115683 | chr16_50637509_+ | SINE | Alu | AluSx |
CAediting_1115684 | chr16_50637518_+ | SINE | Alu | AluSx |
CAediting_1115685 | chr16_50637525_+ | SINE | Alu | AluSx |
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RNA A-to-I editing events in the alternative splicing sites for NKD1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_1115672 | chr16_50629650_+ | 50629637:50629659 | 3SS | 0+7i | ATCTGTAATCCCAACACTTAGGG | -12.38 | ATCTGTAATCCCAGCACTTAGGG | -18.87 |
IR | CAediting_1115672 | chr16_50629650_+ | 50629637:50629659 | 3SS | 0+7i | ATCTGTAATCCCAACACTTAGGG | -12.38 | ATCTGTAATCCCAGCACTTAGGG | -18.87 |
ES | CAediting_1115673 | chr16_50629656_+ | 50629637:50629659 | 3SS | 0+1i | ATCTGTAATCCCAACACTTAGGG | -12.38 | ATCTGTAATCCCAACACTTGGGG | -3.63 |
IR | CAediting_1115673 | chr16_50629656_+ | 50629637:50629659 | 3SS | 0+1i | ATCTGTAATCCCAACACTTAGGG | -12.38 | ATCTGTAATCCCAACACTTGGGG | -3.63 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NKD1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for NKD1 |
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The effects of the RNA editing to the miRNA binding sites for NKD1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for NKD1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for NKD1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
COAD | CAediting_1115661 | chr16_50623121_+ | 0.0276357783380181 | 0.275382935871602 | . | . | . | . |
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Relation with cancer stages for NKD1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for NKD1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for NKD1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for NKD1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |