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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: MICALL1 (CAeditome ID:85377)

Gene summary for MICALL1

check button Gene summary
Gene informationGene symbol

MICALL1

Gene ID

85377

Gene nameMICAL like 1
SynonymsMICAL-L1|MIRAB13
Cytomap

22q13.1

Type of geneprotein-coding
DescriptionMICAL-like protein 1molecule interacting with Rab13
Modification date20210518
UniProtAcc

Q8N3F8

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
MICALL1

GO:0005769

MICAL-like protein 1

21795389

MICALL1

GO:0005802

MICAL-like protein 1

21795389

MICALL1

GO:0055038

MICAL-like protein 1

21795389

MICALL1

GO:0070300

MICAL-like protein 1

23596323

MICALL1

GO:0097320

MICAL-like protein 1

23596323

MICALL1

GO:0005770

MICAL-like protein 1

21795389

MICALL1

GO:0019898

MICAL-like protein 1

19864458

MICALL1

GO:0055038

MICAL-like protein 1

19864458

MICALL1

GO:0055038

MICAL-like protein 1

21951725


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RNA A-to-I events for MICALL1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000100139.12
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1480410(37913993, +), CAediting_1480411(37914015, +), CAediting_1480412(37914041, +), CAediting_1480413(37914056, +), CAediting_1480414(37914353, +), CAediting_1480415(37914702, +), CAediting_1480416(37914710, +), CAediting_1480417(37914827, +), CAediting_1480418(37914839, +), CAediting_1480419(37914847, +), CAediting_1480420(37915003, +), CAediting_1480421(37915064, +), CAediting_1480422(37915067, +), CAediting_1480423(37915095, +), CAediting_1480424(37915104, +), CAediting_1480425(37915108, +), CAediting_1480426(37915112, +), CAediting_1480427(37915114, +), CAediting_1480428(37915123, +), CAediting_1480429(37915125, +), CAediting_1480430(37915131, +), CAediting_1480431(37915141, +), CAediting_1480432(37915177, +), CAediting_1480433(37915207, +), CAediting_1480434(37919886, +), CAediting_1480435(37920011, +), CAediting_1480436(37931016, +), CAediting_1480437(37931039, +), CAediting_1480438(37931042, +), CAediting_1480439(37935466, +), CAediting_1480440(37935533, +), CAediting_1480441(37938281, +), CAediting_1480442(37938322, +), CAediting_1480443(37938347, +), CAediting_1480444(37938357, +), CAediting_1480445(37939551, +), CAediting_1480446(37939556, +), CAediting_1480447(37939564, +), CAediting_1480448(37939597, +), CAediting_1480449(37939598, +), CAediting_1480450(37939609, +), CAediting_1480451(37939615, +), CAediting_1480452(37939694, +), CAediting_1480453(37939719, +), CAediting_1480454(37939724, +), CAediting_1480455(37939847, +), CAediting_1480456(37939914, +), CAediting_1480457(37939928, +), CAediting_1480458(37939929, +), CAediting_1480459(37939934, +), CAediting_1480460(37939936, +), CAediting_1480461(37939961, +), CAediting_1480462(37939970, +), CAediting_1480463(37939991, +), CAediting_1480464(37940021, +), CAediting_1480465(37940039, +), CAediting_1480466(37940046, +), CAediting_1480467(37940206, +), CAediting_1480468(37940261, +), CAediting_1480469(37940264, +), CAediting_1480470(37940372, +), CAediting_1480471(37940373, +), CAediting_1480472(37942525, +), CAediting_1480473(37942566, +), CAediting_1480474(37942571, +), CAediting_1480475(37942576, +), CAediting_1480476(37942581, +), CAediting_1480477(37942601, +), CAediting_1480478(37942606, +), CAediting_1480479(37942628, +), CAediting_1480480(37942631, +), CAediting_1480481(37942641, +), CAediting_1480482(37942643, +), CAediting_1480483(37942649, +), CAediting_1480484(37942657, +), CAediting_1480485(37942668, +), CAediting_1480486(37942677, +), CAediting_1480487(37942683, +), CAediting_1480488(37942686, +), CAediting_1480489(37942690, +), CAediting_1480490(37942700, +), CAediting_1480491(37942708, +), CAediting_1480492(37942712, +), CAediting_1480493(37942724, +), CAediting_1480494(37942732, +), CAediting_1480495(37942740, +), CAediting_1480496(37942761, +), CAediting_1480497(37942762, +), CAediting_1480498(37942763, +), CAediting_1480499(37942775, +), CAediting_1480500(37942777, +), CAediting_1480501(37942784, +), CAediting_1480502(37942788, +),

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RNA editing positional annotations for MICALL1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1480410chr22_37913993_+ncRNA_intronic
CAediting_1480411chr22_37914015_+ncRNA_intronic
CAediting_1480412chr22_37914041_+ncRNA_intronic
CAediting_1480413chr22_37914056_+ncRNA_intronic
CAediting_1480414chr22_37914353_+ncRNA_intronic
CAediting_1480415chr22_37914702_+ncRNA_intronic
CAediting_1480416chr22_37914710_+ncRNA_intronic
CAediting_1480417chr22_37914827_+ncRNA_intronic
CAediting_1480418chr22_37914839_+ncRNA_intronic
CAediting_1480419chr22_37914847_+ncRNA_intronic
CAediting_1480420chr22_37915003_+ncRNA_intronic
CAediting_1480421chr22_37915064_+ncRNA_intronic
CAediting_1480422chr22_37915067_+ncRNA_intronic
CAediting_1480423chr22_37915095_+ncRNA_intronic
CAediting_1480424chr22_37915104_+ncRNA_intronic
CAediting_1480425chr22_37915108_+ncRNA_intronic
CAediting_1480426chr22_37915112_+ncRNA_intronic
CAediting_1480427chr22_37915114_+ncRNA_intronic
CAediting_1480428chr22_37915123_+ncRNA_intronic
CAediting_1480429chr22_37915125_+ncRNA_intronic
CAediting_1480430chr22_37915131_+ncRNA_intronic
CAediting_1480431chr22_37915141_+ncRNA_intronic
CAediting_1480432chr22_37915177_+ncRNA_intronic
CAediting_1480433chr22_37915207_+ncRNA_intronic
CAediting_1480434chr22_37919886_+ncRNA_intronic
CAediting_1480435chr22_37920011_+ncRNA_intronic
CAediting_1480436chr22_37931016_+ncRNA_intronic
CAediting_1480437chr22_37931039_+ncRNA_intronic
CAediting_1480438chr22_37931042_+ncRNA_intronic
CAediting_1480439chr22_37935466_+ncRNA_intronic
CAediting_1480440chr22_37935533_+ncRNA_intronic
CAediting_1480441chr22_37938281_+ncRNA_intronic
CAediting_1480442chr22_37938322_+ncRNA_intronic
CAediting_1480443chr22_37938347_+ncRNA_intronic
CAediting_1480444chr22_37938357_+ncRNA_intronic
CAediting_1480445chr22_37939551_+ncRNA_intronic
CAediting_1480446chr22_37939556_+ncRNA_intronic
CAediting_1480447chr22_37939564_+ncRNA_intronic
CAediting_1480448chr22_37939597_+ncRNA_intronic
CAediting_1480449chr22_37939598_+ncRNA_intronic
CAediting_1480450chr22_37939609_+ncRNA_intronic
CAediting_1480451chr22_37939615_+ncRNA_intronic
CAediting_1480452chr22_37939694_+ncRNA_intronic
CAediting_1480453chr22_37939719_+ncRNA_intronic
CAediting_1480454chr22_37939724_+ncRNA_intronic
CAediting_1480455chr22_37939847_+ncRNA_intronic
CAediting_1480456chr22_37939914_+ncRNA_intronic
CAediting_1480457chr22_37939928_+ncRNA_intronic
CAediting_1480458chr22_37939929_+ncRNA_intronic
CAediting_1480459chr22_37939934_+ncRNA_intronic
CAediting_1480460chr22_37939936_+ncRNA_intronic
CAediting_1480461chr22_37939961_+ncRNA_intronic
CAediting_1480462chr22_37939970_+ncRNA_intronic
CAediting_1480463chr22_37939991_+ncRNA_intronic
CAediting_1480464chr22_37940021_+ncRNA_intronic
CAediting_1480465chr22_37940039_+ncRNA_intronic
CAediting_1480466chr22_37940046_+ncRNA_intronic
CAediting_1480467chr22_37940206_+ncRNA_intronic
CAediting_1480468chr22_37940261_+ncRNA_intronic
CAediting_1480469chr22_37940264_+ncRNA_intronic
CAediting_1480470chr22_37940372_+ncRNA_intronic
CAediting_1480471chr22_37940373_+ncRNA_intronic
CAediting_1480472chr22_37942525_+UTR3
CAediting_1480473chr22_37942566_+UTR3
CAediting_1480474chr22_37942571_+UTR3
CAediting_1480475chr22_37942576_+UTR3
CAediting_1480476chr22_37942581_+UTR3
CAediting_1480477chr22_37942601_+UTR3
CAediting_1480478chr22_37942606_+UTR3
CAediting_1480479chr22_37942628_+UTR3
CAediting_1480480chr22_37942631_+UTR3
CAediting_1480481chr22_37942641_+UTR3
CAediting_1480482chr22_37942643_+UTR3
CAediting_1480483chr22_37942649_+UTR3
CAediting_1480484chr22_37942657_+UTR3
CAediting_1480485chr22_37942668_+UTR3
CAediting_1480486chr22_37942677_+UTR3
CAediting_1480487chr22_37942683_+UTR3
CAediting_1480488chr22_37942686_+UTR3
CAediting_1480489chr22_37942690_+UTR3
CAediting_1480490chr22_37942700_+UTR3
CAediting_1480491chr22_37942708_+UTR3
CAediting_1480492chr22_37942712_+UTR3
CAediting_1480493chr22_37942724_+UTR3
CAediting_1480494chr22_37942732_+UTR3
CAediting_1480495chr22_37942740_+UTR3
CAediting_1480496chr22_37942761_+UTR3
CAediting_1480497chr22_37942762_+UTR3
CAediting_1480498chr22_37942763_+UTR3
CAediting_1480499chr22_37942775_+UTR3
CAediting_1480500chr22_37942777_+UTR3
CAediting_1480501chr22_37942784_+UTR3
CAediting_1480502chr22_37942788_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1480410chr22_37913993_+SINEAluAluSq2
CAediting_1480411chr22_37914015_+SINEAluAluSq2
CAediting_1480412chr22_37914041_+SINEAluAluSq2
CAediting_1480413chr22_37914056_+SINEAluAluSq2
CAediting_1480414chr22_37914353_+SINEAluAluSq2
CAediting_1480415chr22_37914702_+SINEAluAluJb
CAediting_1480416chr22_37914710_+SINEAluAluJb
CAediting_1480417chr22_37914827_+SINEAluAluJb
CAediting_1480418chr22_37914839_+SINEAluAluJb
CAediting_1480419chr22_37914847_+SINEAluAluJb
CAediting_1480420chr22_37915003_+SINEAluAluJr
CAediting_1480421chr22_37915064_+SINEAluAluJr
CAediting_1480422chr22_37915067_+SINEAluAluJr
CAediting_1480423chr22_37915095_+SINEAluAluJr
CAediting_1480424chr22_37915104_+SINEAluAluJr
CAediting_1480425chr22_37915108_+SINEAluAluJr
CAediting_1480426chr22_37915112_+SINEAluAluJr
CAediting_1480427chr22_37915114_+SINEAluAluJr
CAediting_1480428chr22_37915123_+SINEAluAluJr
CAediting_1480429chr22_37915125_+SINEAluAluJr
CAediting_1480430chr22_37915131_+SINEAluAluJr
CAediting_1480431chr22_37915141_+SINEAluAluJr
CAediting_1480432chr22_37915177_+SINEAluAluJr
CAediting_1480433chr22_37915207_+SINEAluAluJr
CAediting_1480434chr22_37919886_+SINEAluAluSx1
CAediting_1480435chr22_37920011_+SINEAluFLAM_A
CAediting_1480439chr22_37935466_+SINEAluAluY
CAediting_1480440chr22_37935533_+SINEAluAluY
CAediting_1480441chr22_37938281_+SINEAluAluY
CAediting_1480442chr22_37938322_+SINEAluAluY
CAediting_1480443chr22_37938347_+SINEAluAluY
CAediting_1480444chr22_37938357_+SINEAluAluY
CAediting_1480445chr22_37939551_+SINEAluAluSg
CAediting_1480446chr22_37939556_+SINEAluAluSg
CAediting_1480447chr22_37939564_+SINEAluAluSg
CAediting_1480448chr22_37939597_+SINEAluAluSg
CAediting_1480449chr22_37939598_+SINEAluAluSg
CAediting_1480450chr22_37939609_+SINEAluAluSg
CAediting_1480451chr22_37939615_+SINEAluAluSg
CAediting_1480452chr22_37939694_+SINEAluAluSg
CAediting_1480453chr22_37939719_+SINEAluAluSg
CAediting_1480454chr22_37939724_+SINEAluAluSg
CAediting_1480455chr22_37939847_+SINEAluAluSx
CAediting_1480456chr22_37939914_+SINEAluAluSx
CAediting_1480457chr22_37939928_+SINEAluAluSx
CAediting_1480458chr22_37939929_+SINEAluAluSx
CAediting_1480459chr22_37939934_+SINEAluAluSx
CAediting_1480460chr22_37939936_+SINEAluAluSx
CAediting_1480461chr22_37939961_+SINEAluAluSx
CAediting_1480462chr22_37939970_+SINEAluAluSx
CAediting_1480463chr22_37939991_+SINEAluAluSx
CAediting_1480464chr22_37940021_+SINEAluAluSx
CAediting_1480465chr22_37940039_+SINEAluAluSx
CAediting_1480466chr22_37940046_+SINEAluAluSx
CAediting_1480467chr22_37940206_+SINEAluAluSc8
CAediting_1480468chr22_37940261_+SINEAluAluSc8
CAediting_1480469chr22_37940264_+SINEAluAluSc8
CAediting_1480470chr22_37940372_+SINEAluAluSc8
CAediting_1480471chr22_37940373_+SINEAluAluSc8
CAediting_1480472chr22_37942525_+SINEAluAluY
CAediting_1480473chr22_37942566_+SINEAluAluY
CAediting_1480474chr22_37942571_+SINEAluAluY
CAediting_1480475chr22_37942576_+SINEAluAluY
CAediting_1480476chr22_37942581_+SINEAluAluY
CAediting_1480477chr22_37942601_+SINEAluAluY
CAediting_1480478chr22_37942606_+SINEAluAluY
CAediting_1480479chr22_37942628_+SINEAluAluY
CAediting_1480480chr22_37942631_+SINEAluAluY
CAediting_1480481chr22_37942641_+SINEAluAluY
CAediting_1480482chr22_37942643_+SINEAluAluY
CAediting_1480483chr22_37942649_+SINEAluAluY
CAediting_1480484chr22_37942657_+SINEAluAluY
CAediting_1480485chr22_37942668_+SINEAluAluY
CAediting_1480486chr22_37942677_+SINEAluAluY
CAediting_1480487chr22_37942683_+SINEAluAluY
CAediting_1480488chr22_37942686_+SINEAluAluY
CAediting_1480489chr22_37942690_+SINEAluAluY
CAediting_1480490chr22_37942700_+SINEAluAluY
CAediting_1480491chr22_37942708_+SINEAluAluY
CAediting_1480492chr22_37942712_+SINEAluAluY
CAediting_1480493chr22_37942724_+SINEAluAluY
CAediting_1480494chr22_37942732_+SINEAluAluY
CAediting_1480495chr22_37942740_+SINEAluAluY
CAediting_1480496chr22_37942761_+SINEAluAluY
CAediting_1480497chr22_37942762_+SINEAluAluY
CAediting_1480498chr22_37942763_+SINEAluAluY
CAediting_1480499chr22_37942775_+SINEAluAluY
CAediting_1480500chr22_37942777_+SINEAluAluY
CAediting_1480501chr22_37942784_+SINEAluAluY
CAediting_1480502chr22_37942788_+SINEAluAluY

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RNA A-to-I editing events in the alternative splicing sites for MICALL1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000100139.12.MICALL1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000100139.12.MICALL1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MICALL1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for MICALL1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for MICALL1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1480474chr22_37942571_+ENSG00000100139.12ENST00000215957hsa-miR-453737942568379425758mer-1a3794255337942575151.00-25.93
CAediting_1480477chr22_37942601_+ENSG00000100139.12ENST00000215957hsa-miR-463437942598379426058mer-1a3794258937942605146.00-27.51
CAediting_1480480chr22_37942631_+ENSG00000100139.12ENST00000215957hsa-miR-6743-3p37942626379426327mer-m83794261137942633140.00-18.70
CAediting_1480481chr22_37942641_+ENSG00000100139.12ENST00000215957hsa-miR-17-3p37942637379426437mer-m83794262337942644142.00-20.77
CAediting_1480485chr22_37942668_+ENSG00000100139.12ENST00000215957hsa-miR-548ae-3p37942666379426727mer-m83794265237942673143.00-6.23
CAediting_1480485chr22_37942668_+ENSG00000100139.12ENST00000215957hsa-miR-548ae-3p37942666379426727mer-m83794265237942673143.00-6.23
CAediting_1480485chr22_37942668_+ENSG00000100139.12ENST00000215957hsa-miR-548ah-3p37942666379426727mer-m83794265437942673144.00-7.23
CAediting_1480485chr22_37942668_+ENSG00000100139.12ENST00000215957hsa-miR-548aj-3p37942666379426727mer-m83794265237942673143.00-7.13
CAediting_1480485chr22_37942668_+ENSG00000100139.12ENST00000215957hsa-miR-548aj-3p37942666379426727mer-m83794265237942673143.00-7.13
CAediting_1480485chr22_37942668_+ENSG00000100139.12ENST00000215957hsa-miR-548am-3p37942666379426727mer-m83794265437942673144.00-7.23
CAediting_1480485chr22_37942668_+ENSG00000100139.12ENST00000215957hsa-miR-548aq-3p37942666379426727mer-m83794265137942673143.00-6.61
CAediting_1480485chr22_37942668_+ENSG00000100139.12ENST00000215957hsa-miR-548j-3p37942666379426727mer-m83794265337942673141.00-7.17
CAediting_1480485chr22_37942668_+ENSG00000100139.12ENST00000215957hsa-miR-548x-3p37942666379426727mer-m83794265337942673143.00-7.13
CAediting_1480485chr22_37942668_+ENSG00000100139.12ENST00000215957hsa-miR-548x-3p37942666379426727mer-m83794265337942673143.00-7.13
CAediting_1480485chr22_37942668_+ENSG00000100139.12ENST00000215957hsa-miR-7844-5p37942664379426707mer-m83794265037942671152.00-15.80
CAediting_1480486chr22_37942677_+ENSG00000100139.12ENST00000215957hsa-miR-480137942672379426776mer3794265537942678150.00-18.63
CAediting_1480491chr22_37942708_+ENSG00000100139.12ENST00000215957hsa-miR-505-3p37942703379427097mer-m83794268437942710146.00-17.38
CAediting_1480497chr22_37942762_+ENSG00000100139.12ENST00000215957hsa-miR-3192-5p37942755379427628mer-1a3794274337942762156.00-25.88
CAediting_1480497chr22_37942762_+ENSG00000100139.12ENST00000215957hsa-miR-32637942757379427637mer-m83794274537942764140.00-14.14
CAediting_1480497chr22_37942762_+ENSG00000100139.12ENST00000215957hsa-miR-330-5p37942757379427637mer-m83794274337942764140.00-21.34
CAediting_1480497chr22_37942762_+ENSG00000100139.12ENST00000215957hsa-miR-431437942756379427627mer-m83794274637942763140.00-18.80
CAediting_1480497chr22_37942762_+ENSG00000100139.12ENST00000215957hsa-miR-514a-5p37942758379427647mer-m83794274537942765154.00-19.44
CAediting_1480497chr22_37942762_+ENSG00000100139.12ENST00000215957hsa-miR-514a-5p37942758379427647mer-m83794274537942765154.00-19.44
CAediting_1480497chr22_37942762_+ENSG00000100139.12ENST00000215957hsa-miR-514a-5p37942758379427647mer-m83794274537942765154.00-19.44
CAediting_1480498chr22_37942763_+ENSG00000100139.12ENST00000215957hsa-miR-3189-3p37942757379427637mer-m83794274137942764149.00-20.43
CAediting_1480498chr22_37942763_+ENSG00000100139.12ENST00000215957hsa-miR-6813-3p37942758379427647mer-m83794274537942765140.00-16.10
CAediting_1480499chr22_37942775_+ENSG00000100139.12ENST00000215957hsa-miR-106a-3p37942771379427766mer3794275637942777141.00-21.13
CAediting_1480501chr22_37942784_+ENSG00000100139.12ENST00000215957hsa-miR-66237942779379427846mer3794276337942785153.00-32.51
CAediting_1480501chr22_37942784_+ENSG00000100139.12ENST00000215957hsa-miR-663b37942782379427887mer-m83794276637942789149.00-31.22
CAediting_1480472chr22_37942525_+ENSG00000100139.12ENST00000215957hsa-miR-340-3p37942519379425268mer-1a3794250537942526146.00-18.22
CAediting_1480472chr22_37942525_+ENSG00000100139.12ENST00000215957hsa-miR-6827-3p37942519379425268mer-1a3794250637942526140.00-14.67
CAediting_1480479chr22_37942628_+ENSG00000100139.12ENST00000215957hsa-miR-1915-3p37942623379426286mer3794261037942629146.00-29.05
CAediting_1480479chr22_37942628_+ENSG00000100139.12ENST00000215957hsa-miR-6840-3p37942622379426287mer-m83794260737942629151.00-28.38
CAediting_1480494chr22_37942732_+ENSG00000100139.12ENST00000215957hsa-miR-3922-5p37942730379427367mer-m83794271437942737162.00-26.46
CAediting_1480494chr22_37942732_+ENSG00000100139.12ENST00000215957hsa-miR-4753-5p37942729379427357mer-m83794271437942736155.00-24.93
CAediting_1480495chr22_37942740_+ENSG00000100139.12ENST00000215957hsa-miR-140-3p37942735379427406mer3794272037942741142.00-19.55
CAediting_1480495chr22_37942740_+ENSG00000100139.12ENST00000215957hsa-miR-313837942739379427446mer3794272237942745142.00-25.46
CAediting_1480495chr22_37942740_+ENSG00000100139.12ENST00000215957hsa-miR-4776-5p37942737379427437mer-m83794272337942744160.00-25.52
CAediting_1480495chr22_37942740_+ENSG00000100139.12ENST00000215957hsa-miR-4776-5p37942737379427437mer-m83794272337942744160.00-25.52
CAediting_1480495chr22_37942740_+ENSG00000100139.12ENST00000215957hsa-miR-4800-5p37942738379427447mer-m83794272237942745151.00-25.10
CAediting_1480496chr22_37942761_+ENSG00000100139.12ENST00000215957hsa-miR-6771-5p37942755379427628mer-1a3794274137942762159.00-26.64
CAediting_1480493chr22_37942724_+ENSG00000100139.12ENST00000215957hsa-miR-452337942718379427247mer-m83794270537942725147.00-23.30
CAediting_1480502chr22_37942788_+ENSG00000100139.12ENST00000215957hsa-miR-6770-3p37942784379427907mer-m83794277037942791154.00-21.95
CAediting_1480502chr22_37942788_+ENSG00000100139.12ENST00000215957hsa-miR-6770-3p37942784379427907mer-m83794277037942791154.00-21.95
CAediting_1480502chr22_37942788_+ENSG00000100139.12ENST00000215957hsa-miR-6770-3p37942784379427907mer-m83794277037942791154.00-21.95

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1480481chr22_37942641_+ENSG00000100139.12ENST00000215957hsa-miR-20b-3p37942637379426437mer-m83794262337942644151-15.85
CAediting_1480482chr22_37942643_+ENSG00000100139.12ENST00000215957hsa-miR-20b-3p37942637379426437mer-m83794262337942644151-15.85
CAediting_1480478chr22_37942606_+ENSG00000100139.12ENST00000215957hsa-miR-239237942603379426097mer-m83794259237942610149-17.2
CAediting_1480491chr22_37942708_+ENSG00000100139.12ENST00000215957hsa-miR-302c-5p37942703379427086mer3794268837942709150-20.56
CAediting_1480496chr22_37942761_+ENSG00000100139.12ENST00000215957hsa-miR-30b-3p37942754379427618mer-1a3794274037942761151-15.84
CAediting_1480474chr22_37942571_+ENSG00000100139.12ENST00000215957hsa-miR-3160-3p37942568379425758mer-1a3794255437942575150-20.6
CAediting_1480474chr22_37942571_+ENSG00000100139.12ENST00000215957hsa-miR-3160-3p37942568379425758mer-1a3794255437942575150-20.6
CAediting_1480475chr22_37942576_+ENSG00000100139.12ENST00000215957hsa-miR-317437942572379425776mer3794255637942578146-24.21
CAediting_1480484chr22_37942657_+ENSG00000100139.12ENST00000215957hsa-miR-3186-5p37942655379426617mer-m83794264137942662145-26.78
CAediting_1480489chr22_37942690_+ENSG00000100139.12ENST00000215957hsa-miR-340-3p37942686379426927mer-m83794267237942693149-17.74
CAediting_1480478chr22_37942606_+ENSG00000100139.12ENST00000215957hsa-miR-3605-5p37942604379426107mer-m83794258637942611151-23.43
CAediting_1480479chr22_37942628_+ENSG00000100139.12ENST00000215957hsa-miR-3664-3p37942622379426287mer-m83794260637942629154-19.91
CAediting_1480472chr22_37942525_+ENSG00000100139.12ENST00000215957hsa-miR-3664-5p37942522379425287mer-m83794250837942529153-15.28
CAediting_1480496chr22_37942761_+ENSG00000100139.12ENST00000215957hsa-miR-3689a-3p37942754379427618mer-1a3794274037942761141-19.9
CAediting_1480496chr22_37942761_+ENSG00000100139.12ENST00000215957hsa-miR-3689b-3p37942754379427618mer-1a3794274037942761141-19.95
CAediting_1480496chr22_37942761_+ENSG00000100139.12ENST00000215957hsa-miR-3689c37942754379427618mer-1a3794274037942761141-19.95
CAediting_1480479chr22_37942628_+ENSG00000100139.12ENST00000215957hsa-miR-3934-3p37942623379426308mer-1a3794260937942630152-24.73
CAediting_1480494chr22_37942732_+ENSG00000100139.12ENST00000215957hsa-miR-397437942729379427357mer-m83794271437942736140-12.12
CAediting_1480501chr22_37942784_+ENSG00000100139.12ENST00000215957hsa-miR-428437942780379427878mer-1a3794277037942787143-15.61
CAediting_1480476chr22_37942581_+ENSG00000100139.12ENST00000215957hsa-miR-432737942577379425837mer-m83794256537942584147-18.29
CAediting_1480472chr22_37942525_+ENSG00000100139.12ENST00000215957hsa-miR-452237942523379425297mer-m83794251037942530148-12.83
CAediting_1480476chr22_37942581_+ENSG00000100139.12ENST00000215957hsa-miR-453837942579379425846mer3794256337942585147-28.45
CAediting_1480481chr22_37942641_+ENSG00000100139.12ENST00000215957hsa-miR-454037942635379426406mer3794261937942641140-17.73
CAediting_1480493chr22_37942724_+ENSG00000100139.12ENST00000215957hsa-miR-468337942722379427287mer-m83794270837942729151-18.32
CAediting_1480483chr22_37942649_+ENSG00000100139.12ENST00000215957hsa-miR-4787-3p37942643379426497mer-m83794262137942650150-25.73
CAediting_1480495chr22_37942740_+ENSG00000100139.12ENST00000215957hsa-miR-513b-5p37942733379427397mer-m83794271637942740150-16.23
CAediting_1480488chr22_37942686_+ENSG00000100139.12ENST00000215957hsa-miR-593-3p37942685379426906mer3794267337942691140-18.96
CAediting_1480489chr22_37942690_+ENSG00000100139.12ENST00000215957hsa-miR-593-3p37942685379426906mer3794267337942691140-18.96
CAediting_1480476chr22_37942581_+ENSG00000100139.12ENST00000215957hsa-miR-6516-5p37942575379425817mer-m83794256337942582148-15.14
CAediting_1480482chr22_37942643_+ENSG00000100139.12ENST00000215957hsa-miR-6720-3p37942641379426488mer-1a3794262737942648147-21.45
CAediting_1480496chr22_37942761_+ENSG00000100139.12ENST00000215957hsa-miR-6779-5p37942754379427618mer-1a3794273837942761151-24.22
CAediting_1480489chr22_37942690_+ENSG00000100139.12ENST00000215957hsa-miR-6827-3p37942686379426927mer-m83794267337942693153-17.53
CAediting_1480472chr22_37942525_+ENSG00000100139.12ENST00000215957hsa-miR-6888-3p37942520379425267mer-m83794250737942527151-14.42
CAediting_1480474chr22_37942571_+ENSG00000100139.12ENST00000215957hsa-miR-7160-5p37942567379425726mer3794255137942573141-24.47
CAediting_1480479chr22_37942628_+ENSG00000100139.12ENST00000215957hsa-miR-767-3p37942625379426317mer-m83794260937942632142-15.8
CAediting_1480480chr22_37942631_+ENSG00000100139.12ENST00000215957hsa-miR-767-3p37942625379426317mer-m83794260937942632142-15.8
CAediting_1480496chr22_37942761_+ENSG00000100139.12ENST00000215957hsa-miR-887-5p37942755379427628mer-1a3794274237942762147-14
CAediting_1480497chr22_37942762_+ENSG00000100139.12ENST00000215957hsa-miR-887-5p37942755379427628mer-1a3794274237942762147-14

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000100139.12ENST00000215957hsa-miR-605-3p37942136379421438mer-1a3794212637942143146-18.63
CAediting_1054808chr15_66496985_-ENSG00000100139.12ENST00000215957hsa-miR-451237941914379419207mer-m83794190037941921151-22.02
CAediting_86358chr1_109598906_+ENSG00000100139.12ENST00000215957hsa-miR-197-5p37942740379427478mer-1a3794272237942747154-26.73
CAediting_77128chr1_85133844_+ENSG00000100139.12ENST00000215957hsa-miR-4423-3p37941856379418627mer-m83794184337941863140-13.1
CAediting_524911chr7_5495852_-ENSG00000100139.12ENST00000215957hsa-miR-589-3p37940992379409987mer-m83794097637940999156-22.57
CAediting_524911chr7_5495852_-ENSG00000100139.12ENST00000215957hsa-miR-589-3p37940883379408897mer-m83794086737940890152-21.19
CAediting_524911chr7_5495852_-ENSG00000100139.12ENST00000215957hsa-miR-589-3p37941538379415447mer-m83794152237941545160-28.57
CAediting_524911chr7_5495852_-ENSG00000100139.12ENST00000215957hsa-miR-589-3p37941735379417417mer-m83794171737941742152-20.18
CAediting_524911chr7_5495852_-ENSG00000100139.12ENST00000424008hsa-miR-589-3p37940992379409987mer-m83794097637940999156-22.57
CAediting_524911chr7_5495852_-ENSG00000100139.12ENST00000424008hsa-miR-589-3p37940883379408897mer-m83794086737940890152-21.19
CAediting_468389chr6_31355314_-ENSG00000100139.12ENST00000215957hsa-miR-6891-5p37940972379409798mer-1a3794096137940979154-24.22
CAediting_468389chr6_31355314_-ENSG00000100139.12ENST00000424008hsa-miR-6891-5p37940972379409798mer-1a3794096137940979154-24.22

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_688080chr9_63819626_+ENSG00000100139.12ENST00000215957hsa-miR-4477b37941636379416427mer-m83794162437941643146-10.97
CAediting_748296chr10_51299626_+ENSG00000100139.12ENST00000215957hsa-miR-605-3p37942046379420527mer-m83794203337942053148-11.53
CAediting_580943chr7_100356700_+ENSG00000100139.12ENST00000215957hsa-miR-6840-3p37942590379425967mer-m83794257637942597144-25.62
CAediting_1399425chr20_1392958_-ENSG00000100139.12ENST00000215957hsa-miR-6869-5p37941786379417927mer-m83794177137941793143-22.37

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for MICALL1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for MICALL1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BLCACAediting_1480480chr22_37942631_+0.0004758212462659370.353405500092719....
LGGCAediting_1480480chr22_37942631_+0.01345900430538130.334394120191162....
LUSCCAediting_1480480chr22_37942631_+7.85599780614851e-070.596274859764106..0.02812023037783870.288418676805898
HNSCCAediting_1480480chr22_37942631_+0.0003519597940384360.273310501708927....
THCACAediting_1480480chr22_37942631_+0.04918814204504830.248882640064044....
SKCMCAediting_1480480chr22_37942631_+0.01378769276448650.311290590147211....
BLCACAediting_1480481chr22_37942641_+1.25530243322195e-060.443027146717516....
LGGCAediting_1480481chr22_37942641_+0.0004441376100293060.307140238639541....
BRCACAediting_1480481chr22_37942641_+0.004540119154602540.276189597473512....
CESCCAediting_1480481chr22_37942641_+0.02741333853529960.194227882927323....
HNSCCAediting_1480481chr22_37942641_+0.0001429351858997940.231530696288099....
UCECCAediting_1480481chr22_37942641_+0.01390160148168160.342445367845134....
SKCMCAediting_1480481chr22_37942641_+5.41515201233741e-050.368745317520257....
BLCACAediting_1480482chr22_37942643_+0.0001578458920550170.338235367490164....
CESCCAediting_1480482chr22_37942643_+0.01420458145216110.223342900733354....
LUSCCAediting_1480482chr22_37942643_+0.004657040589034950.321277042156927....
HNSCCAediting_1480482chr22_37942643_+3.53536382086023e-060.290713654683374....
SKCMCAediting_1480482chr22_37942643_+9.03689144195824e-060.402466233830332....
HNSCCAediting_1480487chr22_37942683_+0.03970545857314160.194669781614515....
CESCCAediting_1480488chr22_37942686_+0.01312810275751960.335526363447152....
HNSCCAediting_1480488chr22_37942686_+1.34613325526007e-070.460722055511965....
ESCACAediting_1480499chr22_37942775_+0.008649429709934640.350767215856918....

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Relation with cancer stages for MICALL1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
ESCApathologic_stageCAediting_1480499chr22_37942775_+0.01642040702655940.32822639947802
HNSCpathologic_stageCAediting_1480480chr22_37942631_+0.02690529551408270.182538027928513
HNSCpathologic_stageCAediting_1480481chr22_37942641_+0.007513591847474630.174716438943933
HNSCpathologic_stageCAediting_1480482chr22_37942643_+0.007032060256699250.182485440183736
THCApathologic_stageCAediting_1480482chr22_37942643_+0.005433831314377070.267003168854015

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Relation with survival for MICALL1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
SKCMCAediting_1480481chr22_37942641_+0.004464508358275720.046785321.389

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RelatedDrugs for MICALL1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MICALL1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource