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Editing gene: SYTL1 (CAeditome ID:84958)

Gene summary for SYTL1

Gene summary

Gene information	Gene symbol	SYTL1
	Gene ID	84958
	Gene name	synaptotagmin like 1
	Synonyms	JFC1\|SLP1
	Cytomap	1p36.11
	Type of gene	protein-coding
	Description	synaptotagmin-like protein 1NADPH oxidase-related, C2 domain-containing proteinexophilin-7
	Modification date	20210518
	UniProtAcc	Q8IYJ3
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SYTL1	GO:0006887	Synaptotagmin-like protein 1	18266782
SYTL1	GO:0005886	Synaptotagmin-like protein 1	18266782

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RNA A-to-I events for SYTL1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000142765.16

RNA A-to-I editing events in Cancer.

CAediting_30683(27343965, +), CAediting_30684(27343996, +), CAediting_30685(27344031, +), CAediting_30686(27344032, +), CAediting_30687(27344056, +), CAediting_30688(27344057, +), CAediting_30689(27344060, +), CAediting_30690(27344066, +), CAediting_30691(27344067, +), CAediting_30692(27344070, +), CAediting_30693(27344072, +), CAediting_30694(27344125, +), CAediting_30695(27344134, +), CAediting_30696(27344147, +), CAediting_30697(27344160, +), CAediting_30698(27344168, +), CAediting_30699(27344184, +), CAediting_30700(27344197, +), CAediting_30701(27344204, +), CAediting_30702(27344207, +), CAediting_30703(27344208, +), CAediting_30704(27344216, +), CAediting_30705(27344221, +), CAediting_30706(27344233, +), CAediting_30707(27344240, +), CAediting_30708(27344243, +), CAediting_30709(27344244, +), CAediting_30710(27344245, +), CAediting_30711(27344249, +), CAediting_30712(27344269, +), CAediting_30713(27344270, +), CAediting_30714(27344277, +), CAediting_30715(27344283, +), CAediting_30716(27344286, +), CAediting_30717(27344332, +), CAediting_30718(27344342, +), CAediting_30719(27344363, +), CAediting_30720(27344364, +), CAediting_30721(27344365, +), CAediting_30722(27344423, +), CAediting_30723(27344427, +), CAediting_30724(27344428, +), CAediting_30725(27344441, +), CAediting_30726(27344502, +), CAediting_30727(27344503, +), CAediting_30728(27344515, +), CAediting_30729(27344524, +), CAediting_30730(27344588, +), CAediting_30731(27344596, +), CAediting_30732(27344627, +), CAediting_30733(27344635, +), CAediting_30734(27344640, +), CAediting_30735(27344643, +), CAediting_30736(27344649, +), CAediting_30737(27344654, +), CAediting_30738(27344663, +), CAediting_30739(27344664, +), CAediting_30740(27344666, +), CAediting_30741(27344673, +), CAediting_30742(27344674, +), CAediting_30743(27344685, +), CAediting_30744(27344688, +), CAediting_30745(27344689, +), CAediting_30746(27344690, +), CAediting_30747(27344691, +), CAediting_30748(27344692, +), CAediting_30749(27344694, +), CAediting_30750(27344697, +), CAediting_30751(27344698, +), CAediting_30752(27344699, +), CAediting_30753(27344700, +), CAediting_30754(27344703, +), CAediting_30755(27344727, +), CAediting_30756(27344729, +), CAediting_30757(27344730, +), CAediting_30758(27344735, +), CAediting_30759(27344739, +), CAediting_30760(27344743, +), CAediting_30761(27344756, +), CAediting_30762(27344759, +), CAediting_30763(27344767, +), CAediting_30764(27344791, +), CAediting_30765(27344796, +), CAediting_30766(27344830, +), CAediting_30767(27344833, +), CAediting_30768(27344834, +), CAediting_30769(27346507, +), CAediting_30770(27346508, +), CAediting_30771(27346516, +), CAediting_30772(27346581, +), CAediting_30773(27346655, +), CAediting_30774(27346659, +), CAediting_30775(27346664, +), CAediting_30776(27348333, +), CAediting_30777(27352062, +), CAediting_30778(27352066, +), CAediting_30779(27352085, +), CAediting_30780(27352098, +), CAediting_30781(27352153, +), CAediting_30782(27352154, +), CAediting_30783(27352175, +), CAediting_30784(27352180, +), CAediting_30785(27352181, +), CAediting_30786(27352184, +), CAediting_30787(27352187, +), CAediting_30788(27352194, +), CAediting_30789(27352220, +), CAediting_30790(27352221, +), CAediting_30791(27352226, +), CAediting_30792(27352230, +), CAediting_30793(27352235, +), CAediting_30794(27352239, +), CAediting_30795(27352243, +), CAediting_30796(27352256, +), CAediting_30797(27352280, +), CAediting_30798(27352281, +), CAediting_30799(27352284, +), CAediting_30800(27352285, +), CAediting_30801(27352290, +), CAediting_30802(27352300, +), CAediting_30803(27352306, +), CAediting_30804(27352321, +), CAediting_30805(27352618, +), CAediting_30806(27352628, +), CAediting_30807(27352671, +), CAediting_30808(27352696, +), CAediting_30809(27352763, +), CAediting_30810(27352841, +), CAediting_30811(27352855, +), CAediting_30812(27352887, +), CAediting_30813(27352915, +), CAediting_30814(27352925, +), CAediting_30815(27352966, +), CAediting_30816(27353020, +), CAediting_30817(27353046, +), CAediting_30818(27353048, +), CAediting_30819(27353060, +),

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RNA editing positional annotations for SYTL1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_30683	chr1_27343965_+	ncRNA_intronic
CAediting_30684	chr1_27343996_+	ncRNA_intronic
CAediting_30685	chr1_27344031_+	ncRNA_intronic
CAediting_30686	chr1_27344032_+	ncRNA_intronic
CAediting_30687	chr1_27344056_+	ncRNA_intronic
CAediting_30688	chr1_27344057_+	ncRNA_intronic
CAediting_30689	chr1_27344060_+	ncRNA_intronic
CAediting_30690	chr1_27344066_+	ncRNA_intronic
CAediting_30691	chr1_27344067_+	ncRNA_intronic
CAediting_30692	chr1_27344070_+	ncRNA_intronic
CAediting_30693	chr1_27344072_+	ncRNA_intronic
CAediting_30694	chr1_27344125_+	ncRNA_intronic
CAediting_30695	chr1_27344134_+	ncRNA_intronic
CAediting_30696	chr1_27344147_+	ncRNA_intronic
CAediting_30697	chr1_27344160_+	ncRNA_intronic
CAediting_30698	chr1_27344168_+	ncRNA_intronic
CAediting_30699	chr1_27344184_+	ncRNA_intronic
CAediting_30700	chr1_27344197_+	ncRNA_intronic
CAediting_30701	chr1_27344204_+	ncRNA_intronic
CAediting_30702	chr1_27344207_+	ncRNA_intronic
CAediting_30703	chr1_27344208_+	ncRNA_intronic
CAediting_30704	chr1_27344216_+	ncRNA_intronic
CAediting_30705	chr1_27344221_+	ncRNA_intronic
CAediting_30706	chr1_27344233_+	ncRNA_intronic
CAediting_30707	chr1_27344240_+	ncRNA_intronic
CAediting_30708	chr1_27344243_+	ncRNA_intronic
CAediting_30709	chr1_27344244_+	ncRNA_intronic
CAediting_30710	chr1_27344245_+	ncRNA_intronic
CAediting_30711	chr1_27344249_+	ncRNA_intronic
CAediting_30712	chr1_27344269_+	ncRNA_intronic
CAediting_30713	chr1_27344270_+	ncRNA_intronic
CAediting_30714	chr1_27344277_+	ncRNA_intronic
CAediting_30715	chr1_27344283_+	ncRNA_intronic
CAediting_30716	chr1_27344286_+	ncRNA_intronic
CAediting_30717	chr1_27344332_+	ncRNA_intronic
CAediting_30718	chr1_27344342_+	ncRNA_intronic
CAediting_30719	chr1_27344363_+	ncRNA_intronic
CAediting_30720	chr1_27344364_+	ncRNA_intronic
CAediting_30721	chr1_27344365_+	ncRNA_intronic
CAediting_30722	chr1_27344423_+	ncRNA_intronic
CAediting_30723	chr1_27344427_+	ncRNA_intronic
CAediting_30724	chr1_27344428_+	ncRNA_intronic
CAediting_30725	chr1_27344441_+	ncRNA_intronic
CAediting_30726	chr1_27344502_+	ncRNA_intronic
CAediting_30727	chr1_27344503_+	ncRNA_intronic
CAediting_30728	chr1_27344515_+	ncRNA_intronic
CAediting_30729	chr1_27344524_+	ncRNA_intronic
CAediting_30730	chr1_27344588_+	ncRNA_intronic
CAediting_30731	chr1_27344596_+	ncRNA_intronic
CAediting_30732	chr1_27344627_+	ncRNA_intronic
CAediting_30733	chr1_27344635_+	ncRNA_intronic
CAediting_30734	chr1_27344640_+	ncRNA_intronic
CAediting_30735	chr1_27344643_+	ncRNA_intronic
CAediting_30736	chr1_27344649_+	ncRNA_intronic
CAediting_30737	chr1_27344654_+	ncRNA_intronic
CAediting_30738	chr1_27344663_+	ncRNA_intronic
CAediting_30739	chr1_27344664_+	ncRNA_intronic
CAediting_30740	chr1_27344666_+	ncRNA_intronic
CAediting_30741	chr1_27344673_+	ncRNA_intronic
CAediting_30742	chr1_27344674_+	ncRNA_intronic
CAediting_30743	chr1_27344685_+	ncRNA_intronic
CAediting_30744	chr1_27344688_+	ncRNA_intronic
CAediting_30745	chr1_27344689_+	ncRNA_intronic
CAediting_30746	chr1_27344690_+	ncRNA_intronic
CAediting_30747	chr1_27344691_+	ncRNA_intronic
CAediting_30748	chr1_27344692_+	ncRNA_intronic
CAediting_30749	chr1_27344694_+	ncRNA_intronic
CAediting_30750	chr1_27344697_+	ncRNA_intronic
CAediting_30751	chr1_27344698_+	ncRNA_intronic
CAediting_30752	chr1_27344699_+	ncRNA_intronic
CAediting_30753	chr1_27344700_+	ncRNA_intronic
CAediting_30754	chr1_27344703_+	ncRNA_intronic
CAediting_30755	chr1_27344727_+	ncRNA_intronic
CAediting_30756	chr1_27344729_+	ncRNA_intronic
CAediting_30757	chr1_27344730_+	ncRNA_intronic
CAediting_30758	chr1_27344735_+	ncRNA_intronic
CAediting_30759	chr1_27344739_+	ncRNA_intronic
CAediting_30760	chr1_27344743_+	ncRNA_intronic
CAediting_30761	chr1_27344756_+	ncRNA_intronic
CAediting_30762	chr1_27344759_+	ncRNA_intronic
CAediting_30763	chr1_27344767_+	ncRNA_intronic
CAediting_30764	chr1_27344791_+	ncRNA_intronic
CAediting_30765	chr1_27344796_+	ncRNA_intronic
CAediting_30766	chr1_27344830_+	ncRNA_intronic
CAediting_30767	chr1_27344833_+	ncRNA_intronic
CAediting_30768	chr1_27344834_+	ncRNA_intronic
CAediting_30769	chr1_27346507_+	ncRNA_intronic
CAediting_30770	chr1_27346508_+	ncRNA_intronic
CAediting_30771	chr1_27346516_+	ncRNA_intronic
CAediting_30772	chr1_27346581_+	ncRNA_intronic
CAediting_30773	chr1_27346655_+	ncRNA_intronic
CAediting_30774	chr1_27346659_+	ncRNA_intronic
CAediting_30775	chr1_27346664_+	ncRNA_intronic
CAediting_30776	chr1_27348333_+	ncRNA_intronic
CAediting_30777	chr1_27352062_+	ncRNA_exonic
CAediting_30778	chr1_27352066_+	ncRNA_exonic
CAediting_30779	chr1_27352085_+	ncRNA_exonic
CAediting_30780	chr1_27352098_+	ncRNA_exonic
CAediting_30781	chr1_27352153_+	ncRNA_exonic
CAediting_30782	chr1_27352154_+	ncRNA_exonic
CAediting_30783	chr1_27352175_+	ncRNA_exonic
CAediting_30784	chr1_27352180_+	ncRNA_exonic
CAediting_30785	chr1_27352181_+	ncRNA_exonic
CAediting_30786	chr1_27352184_+	ncRNA_exonic
CAediting_30787	chr1_27352187_+	ncRNA_exonic
CAediting_30788	chr1_27352194_+	ncRNA_exonic
CAediting_30789	chr1_27352220_+	ncRNA_exonic
CAediting_30790	chr1_27352221_+	ncRNA_exonic
CAediting_30791	chr1_27352226_+	ncRNA_exonic
CAediting_30792	chr1_27352230_+	ncRNA_exonic
CAediting_30793	chr1_27352235_+	ncRNA_exonic
CAediting_30794	chr1_27352239_+	ncRNA_exonic
CAediting_30795	chr1_27352243_+	ncRNA_exonic
CAediting_30796	chr1_27352256_+	ncRNA_exonic
CAediting_30797	chr1_27352280_+	ncRNA_exonic
CAediting_30798	chr1_27352281_+	ncRNA_exonic
CAediting_30799	chr1_27352284_+	ncRNA_exonic
CAediting_30800	chr1_27352285_+	ncRNA_exonic
CAediting_30801	chr1_27352290_+	ncRNA_exonic
CAediting_30802	chr1_27352300_+	ncRNA_exonic
CAediting_30803	chr1_27352306_+	ncRNA_exonic
CAediting_30804	chr1_27352321_+	ncRNA_exonic
CAediting_30805	chr1_27352618_+	ncRNA_exonic
CAediting_30806	chr1_27352628_+	ncRNA_exonic
CAediting_30807	chr1_27352671_+	ncRNA_exonic
CAediting_30808	chr1_27352696_+	ncRNA_exonic
CAediting_30809	chr1_27352763_+	ncRNA_exonic
CAediting_30810	chr1_27352841_+	ncRNA_exonic
CAediting_30811	chr1_27352855_+	ncRNA_exonic
CAediting_30812	chr1_27352887_+	ncRNA_exonic
CAediting_30813	chr1_27352915_+	ncRNA_exonic
CAediting_30814	chr1_27352925_+	ncRNA_exonic
CAediting_30815	chr1_27352966_+	ncRNA_exonic
CAediting_30816	chr1_27353020_+	ncRNA_exonic
CAediting_30817	chr1_27353046_+	ncRNA_exonic
CAediting_30818	chr1_27353048_+	ncRNA_exonic
CAediting_30819	chr1_27353060_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_30683	chr1_27343965_+	SINE	Alu	AluSx
CAediting_30684	chr1_27343996_+	SINE	Alu	AluSx
CAediting_30685	chr1_27344031_+	SINE	Alu	AluSx
CAediting_30686	chr1_27344032_+	SINE	Alu	AluSx
CAediting_30687	chr1_27344056_+	SINE	Alu	AluSx
CAediting_30688	chr1_27344057_+	SINE	Alu	AluSx
CAediting_30689	chr1_27344060_+	SINE	Alu	AluSx
CAediting_30690	chr1_27344066_+	SINE	Alu	AluSx
CAediting_30691	chr1_27344067_+	SINE	Alu	AluSx
CAediting_30692	chr1_27344070_+	SINE	Alu	AluSx
CAediting_30693	chr1_27344072_+	SINE	Alu	AluSx
CAediting_30694	chr1_27344125_+	SINE	Alu	AluSp
CAediting_30695	chr1_27344134_+	SINE	Alu	AluSp
CAediting_30696	chr1_27344147_+	SINE	Alu	AluSp
CAediting_30697	chr1_27344160_+	SINE	Alu	AluSp
CAediting_30698	chr1_27344168_+	SINE	Alu	AluSp
CAediting_30699	chr1_27344184_+	SINE	Alu	AluSp
CAediting_30700	chr1_27344197_+	SINE	Alu	AluSp
CAediting_30701	chr1_27344204_+	SINE	Alu	AluSp
CAediting_30702	chr1_27344207_+	SINE	Alu	AluSp
CAediting_30703	chr1_27344208_+	SINE	Alu	AluSp
CAediting_30704	chr1_27344216_+	SINE	Alu	AluSp
CAediting_30705	chr1_27344221_+	SINE	Alu	AluSp
CAediting_30706	chr1_27344233_+	SINE	Alu	AluSp
CAediting_30707	chr1_27344240_+	SINE	Alu	AluSp
CAediting_30708	chr1_27344243_+	SINE	Alu	AluSp
CAediting_30709	chr1_27344244_+	SINE	Alu	AluSp
CAediting_30710	chr1_27344245_+	SINE	Alu	AluSp
CAediting_30711	chr1_27344249_+	SINE	Alu	AluSp
CAediting_30712	chr1_27344269_+	SINE	Alu	AluSp
CAediting_30713	chr1_27344270_+	SINE	Alu	AluSp
CAediting_30714	chr1_27344277_+	SINE	Alu	AluSp
CAediting_30715	chr1_27344283_+	SINE	Alu	AluSp
CAediting_30716	chr1_27344286_+	SINE	Alu	AluSp
CAediting_30717	chr1_27344332_+	SINE	Alu	AluSp
CAediting_30718	chr1_27344342_+	SINE	Alu	AluSp
CAediting_30719	chr1_27344363_+	SINE	Alu	AluSp
CAediting_30720	chr1_27344364_+	SINE	Alu	AluSp
CAediting_30721	chr1_27344365_+	SINE	Alu	AluSp
CAediting_30722	chr1_27344423_+	SINE	Alu	AluSx
CAediting_30723	chr1_27344427_+	SINE	Alu	AluSx
CAediting_30724	chr1_27344428_+	SINE	Alu	AluSx
CAediting_30725	chr1_27344441_+	SINE	Alu	AluSx
CAediting_30726	chr1_27344502_+	SINE	Alu	AluSx
CAediting_30727	chr1_27344503_+	SINE	Alu	AluSx
CAediting_30728	chr1_27344515_+	SINE	Alu	AluSx
CAediting_30729	chr1_27344524_+	SINE	Alu	AluSx
CAediting_30730	chr1_27344588_+	SINE	Alu	AluSg
CAediting_30731	chr1_27344596_+	SINE	Alu	AluSg
CAediting_30732	chr1_27344627_+	SINE	Alu	AluSg
CAediting_30733	chr1_27344635_+	SINE	Alu	AluSg
CAediting_30734	chr1_27344640_+	SINE	Alu	AluSg
CAediting_30735	chr1_27344643_+	SINE	Alu	AluSg
CAediting_30736	chr1_27344649_+	SINE	Alu	AluSg
CAediting_30737	chr1_27344654_+	SINE	Alu	AluSg
CAediting_30738	chr1_27344663_+	SINE	Alu	AluSg
CAediting_30739	chr1_27344664_+	SINE	Alu	AluSg
CAediting_30740	chr1_27344666_+	SINE	Alu	AluSg
CAediting_30741	chr1_27344673_+	SINE	Alu	AluSg
CAediting_30742	chr1_27344674_+	SINE	Alu	AluSg
CAediting_30743	chr1_27344685_+	SINE	Alu	AluSg
CAediting_30744	chr1_27344688_+	SINE	Alu	AluSg
CAediting_30745	chr1_27344689_+	SINE	Alu	AluSg
CAediting_30746	chr1_27344690_+	SINE	Alu	AluSg
CAediting_30747	chr1_27344691_+	SINE	Alu	AluSg
CAediting_30748	chr1_27344692_+	SINE	Alu	AluSg
CAediting_30749	chr1_27344694_+	SINE	Alu	AluSg
CAediting_30750	chr1_27344697_+	SINE	Alu	AluSg
CAediting_30751	chr1_27344698_+	SINE	Alu	AluSg
CAediting_30752	chr1_27344699_+	SINE	Alu	AluSg
CAediting_30753	chr1_27344700_+	SINE	Alu	AluSg
CAediting_30754	chr1_27344703_+	SINE	Alu	AluSg
CAediting_30755	chr1_27344727_+	SINE	Alu	AluSg
CAediting_30756	chr1_27344729_+	SINE	Alu	AluSg
CAediting_30757	chr1_27344730_+	SINE	Alu	AluSg
CAediting_30758	chr1_27344735_+	SINE	Alu	AluSg
CAediting_30759	chr1_27344739_+	SINE	Alu	AluSg
CAediting_30760	chr1_27344743_+	SINE	Alu	AluSg
CAediting_30761	chr1_27344756_+	SINE	Alu	AluSg
CAediting_30762	chr1_27344759_+	SINE	Alu	AluSg
CAediting_30763	chr1_27344767_+	SINE	Alu	AluSg
CAediting_30764	chr1_27344791_+	SINE	Alu	AluSg
CAediting_30765	chr1_27344796_+	SINE	Alu	AluSg
CAediting_30766	chr1_27344830_+	SINE	Alu	AluSg
CAediting_30767	chr1_27344833_+	SINE	Alu	AluSg
CAediting_30768	chr1_27344834_+	SINE	Alu	AluSg
CAediting_30769	chr1_27346507_+	SINE	Alu	AluJo
CAediting_30770	chr1_27346508_+	SINE	Alu	AluJo
CAediting_30771	chr1_27346516_+	SINE	Alu	AluJo
CAediting_30772	chr1_27346581_+	SINE	Alu	AluJo
CAediting_30773	chr1_27346655_+	SINE	Alu	AluJo
CAediting_30774	chr1_27346659_+	SINE	Alu	AluJo
CAediting_30775	chr1_27346664_+	SINE	Alu	AluJo
CAediting_30776	chr1_27348333_+	SINE	Alu	AluJo
CAediting_30777	chr1_27352062_+	SINE	Alu	AluSx1
CAediting_30778	chr1_27352066_+	SINE	Alu	AluSx1
CAediting_30779	chr1_27352085_+	SINE	Alu	AluSx1
CAediting_30780	chr1_27352098_+	SINE	Alu	AluSx1
CAediting_30781	chr1_27352153_+	SINE	Alu	AluSx1
CAediting_30782	chr1_27352154_+	SINE	Alu	AluSx1
CAediting_30783	chr1_27352175_+	SINE	Alu	AluSx1
CAediting_30784	chr1_27352180_+	SINE	Alu	AluSx1
CAediting_30785	chr1_27352181_+	SINE	Alu	AluSx1
CAediting_30786	chr1_27352184_+	SINE	Alu	AluSx1
CAediting_30787	chr1_27352187_+	SINE	Alu	AluSx1
CAediting_30788	chr1_27352194_+	SINE	Alu	AluSx1
CAediting_30789	chr1_27352220_+	SINE	Alu	AluSx1
CAediting_30790	chr1_27352221_+	SINE	Alu	AluSx1
CAediting_30791	chr1_27352226_+	SINE	Alu	AluSx1
CAediting_30792	chr1_27352230_+	SINE	Alu	AluSx1
CAediting_30793	chr1_27352235_+	SINE	Alu	AluSx1
CAediting_30794	chr1_27352239_+	SINE	Alu	AluSx1
CAediting_30795	chr1_27352243_+	SINE	Alu	AluSx1
CAediting_30796	chr1_27352256_+	SINE	Alu	AluSx1
CAediting_30797	chr1_27352280_+	SINE	Alu	AluSx1
CAediting_30798	chr1_27352281_+	SINE	Alu	AluSx1
CAediting_30799	chr1_27352284_+	SINE	Alu	AluSx1
CAediting_30800	chr1_27352285_+	SINE	Alu	AluSx1
CAediting_30801	chr1_27352290_+	SINE	Alu	AluSx1
CAediting_30802	chr1_27352300_+	SINE	Alu	AluSx1
CAediting_30803	chr1_27352306_+	SINE	Alu	AluSx1
CAediting_30804	chr1_27352321_+	SINE	Alu	AluSx1
CAediting_30805	chr1_27352618_+	SINE	Alu	AluY
CAediting_30806	chr1_27352628_+	SINE	Alu	AluY
CAediting_30807	chr1_27352671_+	SINE	Alu	AluY
CAediting_30808	chr1_27352696_+	SINE	Alu	AluY
CAediting_30809	chr1_27352763_+	SINE	Alu	AluY
CAediting_30810	chr1_27352841_+	SINE	Alu	AluSx
CAediting_30811	chr1_27352855_+	SINE	Alu	AluSx
CAediting_30812	chr1_27352887_+	SINE	Alu	AluSx
CAediting_30813	chr1_27352915_+	SINE	Alu	AluSx
CAediting_30814	chr1_27352925_+	SINE	Alu	AluSx
CAediting_30815	chr1_27352966_+	SINE	Alu	AluSx
CAediting_30816	chr1_27353020_+	SINE	Alu	AluSx
CAediting_30817	chr1_27353046_+	SINE	Alu	AluSx
CAediting_30818	chr1_27353048_+	SINE	Alu	AluSx
CAediting_30819	chr1_27353060_+	SINE	Alu	AluSx

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RNA A-to-I editing events in the alternative splicing sites for SYTL1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_30783	chr1_27352175_+	27352162:27352184	3SS	0+7i	AAACCCCATCTCTATCAAAAGTA	-3.92	AAACCCCATCTCTGTCAAAAGTA	-3.87
IR	CAediting_30783	chr1_27352175_+	27352162:27352184	3SS	0+7i	AAACCCCATCTCTATCAAAAGTA	-3.92	AAACCCCATCTCTGTCAAAAGTA	-3.87
ES	CAediting_30784	chr1_27352180_+	27352162:27352184	3SS	0+2i	AAACCCCATCTCTATCAAAAGTA	-3.92	AAACCCCATCTCTATCAAGAGTA	-11.87
IR	CAediting_30784	chr1_27352180_+	27352162:27352184	3SS	0+2i	AAACCCCATCTCTATCAAAAGTA	-3.92	AAACCCCATCTCTATCAAGAGTA	-11.87
ES	CAediting_30785	chr1_27352181_+	27352162:27352184	3SS	0+1i	AAACCCCATCTCTATCAAAAGTA	-3.92	AAACCCCATCTCTATCAAAGGTA	4.83
IR	CAediting_30785	chr1_27352181_+	27352162:27352184	3SS	0+1i	AAACCCCATCTCTATCAAAAGTA	-3.92	AAACCCCATCTCTATCAAAGGTA	4.83
ES	CAediting_30786	chr1_27352184_+	27352162:27352184	3SS	3+0i	AAACCCCATCTCTATCAAAAGTA	-3.92	AAACCCCATCTCTATCAAAAGTG	-3.96
IR	CAediting_30786	chr1_27352184_+	27352162:27352184	3SS	3+0i	AAACCCCATCTCTATCAAAAGTA	-3.92	AAACCCCATCTCTATCAAAAGTG	-3.96

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000142765.16.SYTL1.

Correlation between RNA A-to-I editing and PSI for ENSG00000142765.16.SYTL1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SYTL1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

BLCA.CAediting_30747.ENSG00000142765.SYTL1.png
Soverview

STAD.CAediting_30760.ENSG00000142765.SYTL1.png
Soverview

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Protein coding region RNA A-to-I editings for SYTL1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SYTL1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SYTL1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000475199.1	retained_intron

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_30777	ENST00000475199.1	chr1_27352062_+	-1142.60	-1136.40	-1193.30
CAediting_30778	ENST00000475199.1	chr1_27352066_+	-1140.50	-1136.40	-1193.30
CAediting_30779	ENST00000475199.1	chr1_27352085_+	-1136.40	-1136.40	-1193.30
CAediting_30780	ENST00000475199.1	chr1_27352098_+	-1140.10	-1136.40	-1193.30
CAediting_30781	ENST00000475199.1	chr1_27352153_+	-1136.10	-1136.40	-1193.30
CAediting_30782	ENST00000475199.1	chr1_27352154_+	-1136.40	-1136.40	-1193.30
CAediting_30783	ENST00000475199.1	chr1_27352175_+	-1133.60	-1136.40	-1193.30
CAediting_30784	ENST00000475199.1	chr1_27352180_+	-1136.50	-1136.40	-1193.30
CAediting_30785	ENST00000475199.1	chr1_27352181_+	-1136.00	-1136.40	-1193.30
CAediting_30786	ENST00000475199.1	chr1_27352184_+	-1136.40	-1136.40	-1193.30
CAediting_30787	ENST00000475199.1	chr1_27352187_+	-1136.40	-1136.40	-1193.30
CAediting_30788	ENST00000475199.1	chr1_27352194_+	-1136.10	-1136.40	-1193.30
CAediting_30789	ENST00000475199.1	chr1_27352220_+	-1136.50	-1136.40	-1193.30
CAediting_30790	ENST00000475199.1	chr1_27352221_+	-1136.40	-1136.40	-1193.30
CAediting_30791	ENST00000475199.1	chr1_27352226_+	-1135.70	-1136.40	-1193.30
CAediting_30792	ENST00000475199.1	chr1_27352230_+	-1136.40	-1136.40	-1193.30
CAediting_30793	ENST00000475199.1	chr1_27352235_+	-1143.30	-1136.40	-1193.30
CAediting_30794	ENST00000475199.1	chr1_27352239_+	-1143.60	-1136.40	-1193.30
CAediting_30795	ENST00000475199.1	chr1_27352243_+	-1135.50	-1136.40	-1193.30
CAediting_30796	ENST00000475199.1	chr1_27352256_+	-1139.10	-1136.40	-1193.30
CAediting_30797	ENST00000475199.1	chr1_27352280_+	-1135.50	-1136.40	-1193.30
CAediting_30798	ENST00000475199.1	chr1_27352281_+	-1143.10	-1136.40	-1193.30
CAediting_30799	ENST00000475199.1	chr1_27352284_+	-1139.80	-1136.40	-1193.30
CAediting_30800	ENST00000475199.1	chr1_27352285_+	-1135.90	-1136.40	-1193.30
CAediting_30801	ENST00000475199.1	chr1_27352290_+	-1136.00	-1136.40	-1193.30
CAediting_30802	ENST00000475199.1	chr1_27352300_+	-1136.00	-1136.40	-1193.30
CAediting_30803	ENST00000475199.1	chr1_27352306_+	-1143.10	-1136.40	-1193.30
CAediting_30804	ENST00000475199.1	chr1_27352321_+	-1135.50	-1136.40	-1193.30
CAediting_30805	ENST00000475199.1	chr1_27352618_+	-1136.70	-1136.40	-1193.30
CAediting_30806	ENST00000475199.1	chr1_27352628_+	-1138.50	-1136.40	-1193.30
CAediting_30807	ENST00000475199.1	chr1_27352671_+	-1139.40	-1136.40	-1193.30
CAediting_30808	ENST00000475199.1	chr1_27352696_+	-1136.40	-1136.40	-1193.30
CAediting_30809	ENST00000475199.1	chr1_27352763_+	-1137.50	-1136.40	-1193.30
CAediting_30810	ENST00000475199.1	chr1_27352841_+	-1135.70	-1136.40	-1193.30
CAediting_30811	ENST00000475199.1	chr1_27352855_+	-1140.00	-1136.40	-1193.30
CAediting_30812	ENST00000475199.1	chr1_27352887_+	-1140.00	-1136.40	-1193.30
CAediting_30813	ENST00000475199.1	chr1_27352915_+	-1136.10	-1136.40	-1193.30
CAediting_30814	ENST00000475199.1	chr1_27352925_+	-1136.40	-1136.40	-1193.30
CAediting_30815	ENST00000475199.1	chr1_27352966_+	-1141.90	-1136.40	-1193.30
CAediting_30816	ENST00000475199.1	chr1_27353020_+	-1135.70	-1136.40	-1193.30
CAediting_30817	ENST00000475199.1	chr1_27353046_+	-1136.80	-1136.40	-1193.30
CAediting_30818	ENST00000475199.1	chr1_27353048_+	-1136.10	-1136.40	-1193.30
CAediting_30819	ENST00000475199.1	chr1_27353060_+	-1136.40	-1136.40	-1193.30

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Relation with ADAR for SYTL1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_30687	chr1_27344056_+	0.00172652899211858	0.296777160678947	0.00960163196373798	0.24705355784507	.	.
LUSC	CAediting_30702	chr1_27344207_+	.	.	.	.	0.0388160747235659	0.232962370416308
BLCA	CAediting_30709	chr1_27344244_+	.	.	0.0178158421928775	0.315606642926715	.	.
LUSC	CAediting_30709	chr1_27344244_+	.	.	0.0213267613799072	0.307089336231015	.	.
BLCA	CAediting_30731	chr1_27344596_+	0.0265539411168062	0.291234198040755	.	.	.	.
BLCA	CAediting_30756	chr1_27344729_+	0.0471802950317599	0.221217830173286	.	.	.	.
BLCA	CAediting_30760	chr1_27344743_+	0.00442747354331239	0.257031978375449	.	.	.	.
CESC	CAediting_30760	chr1_27344743_+	0.00438324045200614	0.357099966058744	.	.	.	.
CESC	CAediting_30777	chr1_27352062_+	0.0305136924766518	0.256976185993399	.	.	.	.
PRAD	CAediting_30777	chr1_27352062_+	0.00103572206093909	0.438066971467953	.	.	.	.
BLCA	CAediting_30789	chr1_27352220_+	0.00611759245533817	0.286879579867322	.	.	0.041658151492895	0.215195678156642
BLCA	CAediting_30790	chr1_27352221_+	0.0402139106381886	0.168285791248476	0.00942376714829064	0.212057269226915	.	.
CESC	CAediting_30790	chr1_27352221_+	0.0331403964785895	0.214338199466296	0.0442127408561671	0.20269047354134	.	.
LUAD	CAediting_30790	chr1_27352221_+	0.00885629890342044	0.306386541663326	.	.	.	.
LUSC	CAediting_30790	chr1_27352221_+	0.0129055241592224	0.211181684651058	.	.	.	.
PRAD	CAediting_30790	chr1_27352221_+	.	.	.	.	0.0460005278378477	0.232725734555201

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Relation with cancer stages for SYTL1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BLCA	pathologic_stage	CAediting_30777	chr1_27352062_+	0.0464676235415423	-0.194779756668932
BLCA	pathologic_stage	CAediting_30790	chr1_27352221_+	0.0114259232900124	0.207407593827283
LUSC	pathologic_stage	CAediting_30789	chr1_27352220_+	0.0160049413461007	0.256142208881851

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Relation with survival for SYTL1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LAML	CAediting_30692	chr1_27344070_+	0.00481905703975538	0.0464515	0.00810714

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RelatedDrugs for SYTL1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SYTL1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene