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Editing gene: GNPTG (CAeditome ID:84572)

Gene summary for GNPTG

Gene summary

Gene information	Gene symbol	GNPTG
	Gene ID	84572
	Gene name	N-acetylglucosamine-1-phosphate transferase subunit gamma
	Synonyms	C16orf27\|GNPTAG\|LP2537\|RJD9
	Cytomap	16p13.3
	Type of gene	protein-coding
	Description	N-acetylglucosamine-1-phosphotransferase subunit gammaN-acetylglucosamine-1-phosphate transferase gamma subunitUDP-N-acetylglucosamine-1-phosphotransferase subunit gammaglcNAc-1-phosphotransferase subunit gamma
	Modification date	20210531
	UniProtAcc	Q9UJJ9
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
GNPTG	GO:0046835	N-acetylglucosamine-1-phosphotransferase subunit gamma	19955174

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RNA A-to-I events for GNPTG

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000090581.8

RNA A-to-I editing events in Cancer.

CAediting_1078346(1353031, +), CAediting_1078347(1353034, +), CAediting_1078348(1353049, +), CAediting_1078349(1353063, +), CAediting_1078350(1353070, +), CAediting_1078351(1353109, +), CAediting_1078352(1353111, +), CAediting_1078353(1353134, +), CAediting_1078354(1353137, +), CAediting_1078355(1353153, +), CAediting_1078356(1353156, +), CAediting_1078357(1353162, +), CAediting_1078358(1353186, +), CAediting_1078359(1353199, +), CAediting_1078360(1353206, +), CAediting_1078361(1353216, +), CAediting_1078362(1353224, +), CAediting_1078363(1353239, +), CAediting_1078364(1353541, +), CAediting_1078365(1353545, +), CAediting_1078366(1353587, +), CAediting_1078367(1353588, +), CAediting_1078368(1353591, +), CAediting_1078369(1353593, +), CAediting_1078370(1353623, +), CAediting_1078371(1353627, +), CAediting_1078372(1353628, +), CAediting_1078373(1353635, +), CAediting_1078374(1353636, +), CAediting_1078375(1353641, +), CAediting_1078376(1353653, +), CAediting_1078377(1353663, +), CAediting_1078378(1353707, +), CAediting_1078379(1353709, +), CAediting_1078380(1353722, +), CAediting_1078381(1353745, +), CAediting_1078382(1353747, +), CAediting_1078383(1353753, +), CAediting_1078384(1353759, +), CAediting_1078385(1353760, +), CAediting_1078386(1354343, +), CAediting_1078387(1354361, +), CAediting_1078388(1354366, +), CAediting_1078389(1354369, +), CAediting_1078390(1354375, +), CAediting_1078391(1354389, +), CAediting_1078392(1354390, +), CAediting_1078393(1354400, +), CAediting_1078394(1354411, +), CAediting_1078395(1354414, +), CAediting_1078396(1354415, +), CAediting_1078397(1354420, +), CAediting_1078398(1354434, +), CAediting_1078399(1354435, +), CAediting_1078400(1354439, +), CAediting_1078401(1354447, +), CAediting_1078402(1354449, +), CAediting_1078403(1354455, +), CAediting_1078404(1354465, +), CAediting_1078405(1354466, +), CAediting_1078406(1354471, +), CAediting_1078407(1354488, +), CAediting_1078408(1354495, +), CAediting_1078409(1354497, +), CAediting_1078410(1354506, +), CAediting_1078411(1354507, +), CAediting_1078412(1354511, +), CAediting_1078413(1354514, +), CAediting_1078414(1354520, +), CAediting_1078415(1354531, +), CAediting_1078416(1354536, +), CAediting_1078417(1354538, +), CAediting_1078418(1354541, +), CAediting_1078419(1354551, +), CAediting_1078420(1354556, +), CAediting_1078421(1354573, +), CAediting_1078422(1354574, +), CAediting_1078423(1357557, +), CAediting_1078424(1357643, +), CAediting_1078425(1357702, +), CAediting_1078426(1357724, +), CAediting_1078427(1357787, +), CAediting_1078428(1357800, +), CAediting_1078429(1358028, +), CAediting_1078430(1361425, +), CAediting_1078431(1361433, +), CAediting_1078432(1361442, +), CAediting_1078433(1361444, +), CAediting_1078434(1361447, +), CAediting_1078435(1361467, +), CAediting_1078436(1361490, +), CAediting_1078437(1361497, +), CAediting_1078438(1361523, +), CAediting_1078439(1361529, +), CAediting_1078440(1361533, +), CAediting_1078441(1361540, +), CAediting_1078442(1361546, +), CAediting_1078443(1361550, +), CAediting_1078444(1361555, +), CAediting_1078445(1361556, +), CAediting_1078446(1361564, +), CAediting_1078447(1361565, +), CAediting_1078448(1361585, +), CAediting_1078449(1361589, +), CAediting_1078450(1361604, +), CAediting_1078451(1361614, +), CAediting_1078452(1361654, +),

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RNA editing positional annotations for GNPTG using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1078346	chr16_1353031_+	ncRNA_intronic
CAediting_1078347	chr16_1353034_+	ncRNA_intronic
CAediting_1078348	chr16_1353049_+	ncRNA_intronic
CAediting_1078349	chr16_1353063_+	ncRNA_intronic
CAediting_1078350	chr16_1353070_+	ncRNA_intronic
CAediting_1078351	chr16_1353109_+	ncRNA_intronic
CAediting_1078352	chr16_1353111_+	ncRNA_intronic
CAediting_1078353	chr16_1353134_+	ncRNA_intronic
CAediting_1078354	chr16_1353137_+	ncRNA_intronic
CAediting_1078355	chr16_1353153_+	ncRNA_intronic
CAediting_1078356	chr16_1353156_+	ncRNA_intronic
CAediting_1078357	chr16_1353162_+	ncRNA_intronic
CAediting_1078358	chr16_1353186_+	ncRNA_intronic
CAediting_1078359	chr16_1353199_+	ncRNA_intronic
CAediting_1078360	chr16_1353206_+	ncRNA_intronic
CAediting_1078361	chr16_1353216_+	ncRNA_intronic
CAediting_1078362	chr16_1353224_+	ncRNA_intronic
CAediting_1078363	chr16_1353239_+	ncRNA_intronic
CAediting_1078364	chr16_1353541_+	ncRNA_intronic
CAediting_1078365	chr16_1353545_+	ncRNA_intronic
CAediting_1078366	chr16_1353587_+	ncRNA_intronic
CAediting_1078367	chr16_1353588_+	ncRNA_intronic
CAediting_1078368	chr16_1353591_+	ncRNA_intronic
CAediting_1078369	chr16_1353593_+	ncRNA_intronic
CAediting_1078370	chr16_1353623_+	ncRNA_intronic
CAediting_1078371	chr16_1353627_+	ncRNA_intronic
CAediting_1078372	chr16_1353628_+	ncRNA_intronic
CAediting_1078373	chr16_1353635_+	ncRNA_intronic
CAediting_1078374	chr16_1353636_+	ncRNA_intronic
CAediting_1078375	chr16_1353641_+	ncRNA_intronic
CAediting_1078376	chr16_1353653_+	ncRNA_intronic
CAediting_1078377	chr16_1353663_+	ncRNA_intronic
CAediting_1078378	chr16_1353707_+	ncRNA_intronic
CAediting_1078379	chr16_1353709_+	ncRNA_intronic
CAediting_1078380	chr16_1353722_+	ncRNA_intronic
CAediting_1078381	chr16_1353745_+	ncRNA_intronic
CAediting_1078382	chr16_1353747_+	ncRNA_intronic
CAediting_1078383	chr16_1353753_+	ncRNA_intronic
CAediting_1078384	chr16_1353759_+	ncRNA_intronic
CAediting_1078385	chr16_1353760_+	ncRNA_intronic
CAediting_1078386	chr16_1354343_+	ncRNA_intronic
CAediting_1078387	chr16_1354361_+	ncRNA_intronic
CAediting_1078388	chr16_1354366_+	ncRNA_intronic
CAediting_1078389	chr16_1354369_+	ncRNA_intronic
CAediting_1078390	chr16_1354375_+	ncRNA_intronic
CAediting_1078391	chr16_1354389_+	ncRNA_intronic
CAediting_1078392	chr16_1354390_+	ncRNA_intronic
CAediting_1078393	chr16_1354400_+	ncRNA_intronic
CAediting_1078394	chr16_1354411_+	ncRNA_intronic
CAediting_1078395	chr16_1354414_+	ncRNA_intronic
CAediting_1078396	chr16_1354415_+	ncRNA_intronic
CAediting_1078397	chr16_1354420_+	ncRNA_intronic
CAediting_1078398	chr16_1354434_+	ncRNA_intronic
CAediting_1078399	chr16_1354435_+	ncRNA_intronic
CAediting_1078400	chr16_1354439_+	ncRNA_intronic
CAediting_1078401	chr16_1354447_+	ncRNA_intronic
CAediting_1078402	chr16_1354449_+	ncRNA_intronic
CAediting_1078403	chr16_1354455_+	ncRNA_intronic
CAediting_1078404	chr16_1354465_+	ncRNA_intronic
CAediting_1078405	chr16_1354466_+	ncRNA_intronic
CAediting_1078406	chr16_1354471_+	ncRNA_intronic
CAediting_1078407	chr16_1354488_+	ncRNA_intronic
CAediting_1078408	chr16_1354495_+	ncRNA_intronic
CAediting_1078409	chr16_1354497_+	ncRNA_intronic
CAediting_1078410	chr16_1354506_+	ncRNA_intronic
CAediting_1078411	chr16_1354507_+	ncRNA_intronic
CAediting_1078412	chr16_1354511_+	ncRNA_intronic
CAediting_1078413	chr16_1354514_+	ncRNA_intronic
CAediting_1078414	chr16_1354520_+	ncRNA_intronic
CAediting_1078415	chr16_1354531_+	ncRNA_intronic
CAediting_1078416	chr16_1354536_+	ncRNA_intronic
CAediting_1078417	chr16_1354538_+	ncRNA_intronic
CAediting_1078418	chr16_1354541_+	ncRNA_intronic
CAediting_1078419	chr16_1354551_+	ncRNA_intronic
CAediting_1078420	chr16_1354556_+	ncRNA_intronic
CAediting_1078421	chr16_1354573_+	ncRNA_intronic
CAediting_1078422	chr16_1354574_+	ncRNA_intronic
CAediting_1078423	chr16_1357557_+	ncRNA_intronic
CAediting_1078424	chr16_1357643_+	ncRNA_intronic
CAediting_1078425	chr16_1357702_+	exonic
CAediting_1078426	chr16_1357724_+	exonic
CAediting_1078427	chr16_1357787_+	ncRNA_exonic
CAediting_1078428	chr16_1357800_+	ncRNA_exonic
CAediting_1078429	chr16_1358028_+	ncRNA_intronic
CAediting_1078430	chr16_1361425_+	ncRNA_exonic
CAediting_1078431	chr16_1361433_+	ncRNA_exonic
CAediting_1078432	chr16_1361442_+	ncRNA_exonic
CAediting_1078433	chr16_1361444_+	ncRNA_exonic
CAediting_1078434	chr16_1361447_+	ncRNA_exonic
CAediting_1078435	chr16_1361467_+	ncRNA_exonic
CAediting_1078436	chr16_1361490_+	ncRNA_exonic
CAediting_1078437	chr16_1361497_+	ncRNA_exonic
CAediting_1078438	chr16_1361523_+	ncRNA_exonic
CAediting_1078439	chr16_1361529_+	ncRNA_exonic
CAediting_1078440	chr16_1361533_+	ncRNA_exonic
CAediting_1078441	chr16_1361540_+	ncRNA_exonic
CAediting_1078442	chr16_1361546_+	ncRNA_exonic
CAediting_1078443	chr16_1361550_+	ncRNA_exonic
CAediting_1078444	chr16_1361555_+	ncRNA_exonic
CAediting_1078445	chr16_1361556_+	ncRNA_exonic
CAediting_1078446	chr16_1361564_+	ncRNA_exonic
CAediting_1078447	chr16_1361565_+	ncRNA_exonic
CAediting_1078448	chr16_1361585_+	ncRNA_exonic
CAediting_1078449	chr16_1361589_+	ncRNA_exonic
CAediting_1078450	chr16_1361604_+	ncRNA_exonic
CAediting_1078451	chr16_1361614_+	ncRNA_exonic
CAediting_1078452	chr16_1361654_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1078346	chr16_1353031_+	SINE	Alu	AluSz
CAediting_1078347	chr16_1353034_+	SINE	Alu	AluSz
CAediting_1078348	chr16_1353049_+	SINE	Alu	AluSz
CAediting_1078349	chr16_1353063_+	SINE	Alu	AluSz
CAediting_1078350	chr16_1353070_+	SINE	Alu	AluSz
CAediting_1078351	chr16_1353109_+	SINE	Alu	AluSz
CAediting_1078352	chr16_1353111_+	SINE	Alu	AluSz
CAediting_1078353	chr16_1353134_+	SINE	Alu	AluSz
CAediting_1078354	chr16_1353137_+	SINE	Alu	AluSz
CAediting_1078355	chr16_1353153_+	SINE	Alu	AluSz
CAediting_1078356	chr16_1353156_+	SINE	Alu	AluSz
CAediting_1078357	chr16_1353162_+	SINE	Alu	AluSz
CAediting_1078358	chr16_1353186_+	SINE	Alu	AluSz
CAediting_1078359	chr16_1353199_+	SINE	Alu	AluSz
CAediting_1078360	chr16_1353206_+	SINE	Alu	AluSz
CAediting_1078361	chr16_1353216_+	SINE	Alu	AluSz
CAediting_1078362	chr16_1353224_+	SINE	Alu	AluSz
CAediting_1078363	chr16_1353239_+	SINE	Alu	AluSz
CAediting_1078364	chr16_1353541_+	SINE	Alu	AluJr
CAediting_1078365	chr16_1353545_+	SINE	Alu	AluJr
CAediting_1078366	chr16_1353587_+	SINE	Alu	AluJr
CAediting_1078367	chr16_1353588_+	SINE	Alu	AluJr
CAediting_1078368	chr16_1353591_+	SINE	Alu	AluJr
CAediting_1078369	chr16_1353593_+	SINE	Alu	AluJr
CAediting_1078370	chr16_1353623_+	SINE	Alu	AluJr
CAediting_1078371	chr16_1353627_+	SINE	Alu	AluJr
CAediting_1078372	chr16_1353628_+	SINE	Alu	AluJr
CAediting_1078373	chr16_1353635_+	SINE	Alu	AluJr
CAediting_1078374	chr16_1353636_+	SINE	Alu	AluJr
CAediting_1078375	chr16_1353641_+	SINE	Alu	AluJr
CAediting_1078376	chr16_1353653_+	SINE	Alu	AluJr
CAediting_1078377	chr16_1353663_+	SINE	Alu	AluJr
CAediting_1078378	chr16_1353707_+	SINE	Alu	AluJr
CAediting_1078379	chr16_1353709_+	SINE	Alu	AluJr
CAediting_1078380	chr16_1353722_+	SINE	Alu	AluJr
CAediting_1078381	chr16_1353745_+	SINE	Alu	AluJr
CAediting_1078382	chr16_1353747_+	SINE	Alu	AluJr
CAediting_1078383	chr16_1353753_+	SINE	Alu	AluJr
CAediting_1078384	chr16_1353759_+	SINE	Alu	AluJr
CAediting_1078385	chr16_1353760_+	SINE	Alu	AluJr
CAediting_1078386	chr16_1354343_+	SINE	Alu	AluSz
CAediting_1078387	chr16_1354361_+	SINE	Alu	AluSz
CAediting_1078388	chr16_1354366_+	SINE	Alu	AluSz
CAediting_1078389	chr16_1354369_+	SINE	Alu	AluSz
CAediting_1078390	chr16_1354375_+	SINE	Alu	AluSz
CAediting_1078391	chr16_1354389_+	SINE	Alu	AluSz
CAediting_1078392	chr16_1354390_+	SINE	Alu	AluSz
CAediting_1078393	chr16_1354400_+	SINE	Alu	AluSz
CAediting_1078394	chr16_1354411_+	SINE	Alu	AluSz
CAediting_1078395	chr16_1354414_+	SINE	Alu	AluSz
CAediting_1078396	chr16_1354415_+	SINE	Alu	AluSz
CAediting_1078397	chr16_1354420_+	SINE	Alu	AluSz
CAediting_1078398	chr16_1354434_+	SINE	Alu	AluSz
CAediting_1078399	chr16_1354435_+	SINE	Alu	AluSz
CAediting_1078400	chr16_1354439_+	SINE	Alu	AluSz
CAediting_1078401	chr16_1354447_+	SINE	Alu	AluSz
CAediting_1078402	chr16_1354449_+	SINE	Alu	AluSz
CAediting_1078403	chr16_1354455_+	SINE	Alu	AluSz
CAediting_1078404	chr16_1354465_+	SINE	Alu	AluSz
CAediting_1078405	chr16_1354466_+	SINE	Alu	AluSz
CAediting_1078406	chr16_1354471_+	SINE	Alu	AluSz
CAediting_1078407	chr16_1354488_+	SINE	Alu	AluSz
CAediting_1078408	chr16_1354495_+	SINE	Alu	AluSz
CAediting_1078409	chr16_1354497_+	SINE	Alu	AluSz
CAediting_1078410	chr16_1354506_+	SINE	Alu	AluSz
CAediting_1078411	chr16_1354507_+	SINE	Alu	AluSz
CAediting_1078412	chr16_1354511_+	SINE	Alu	AluSz
CAediting_1078413	chr16_1354514_+	SINE	Alu	AluSz
CAediting_1078414	chr16_1354520_+	SINE	Alu	AluSz
CAediting_1078415	chr16_1354531_+	SINE	Alu	AluSz
CAediting_1078416	chr16_1354536_+	SINE	Alu	AluSz
CAediting_1078417	chr16_1354538_+	SINE	Alu	AluSz
CAediting_1078418	chr16_1354541_+	SINE	Alu	AluSz
CAediting_1078419	chr16_1354551_+	SINE	Alu	AluSz
CAediting_1078420	chr16_1354556_+	SINE	Alu	AluSz
CAediting_1078421	chr16_1354573_+	SINE	Alu	AluSz
CAediting_1078422	chr16_1354574_+	SINE	Alu	AluSz
CAediting_1078423	chr16_1357557_+	SINE	Alu	AluY
CAediting_1078424	chr16_1357643_+	SINE	Alu	AluY
CAediting_1078425	chr16_1357702_+	SINE	Alu	AluY
CAediting_1078426	chr16_1357724_+	SINE	Alu	AluY
CAediting_1078427	chr16_1357787_+	SINE	Alu	AluY
CAediting_1078428	chr16_1357800_+	SINE	Alu	AluY
CAediting_1078430	chr16_1361425_+	SINE	Alu	AluYm1
CAediting_1078431	chr16_1361433_+	SINE	Alu	AluYm1
CAediting_1078432	chr16_1361442_+	SINE	Alu	AluYm1
CAediting_1078433	chr16_1361444_+	SINE	Alu	AluYm1
CAediting_1078434	chr16_1361447_+	SINE	Alu	AluYm1
CAediting_1078435	chr16_1361467_+	SINE	Alu	AluYm1
CAediting_1078436	chr16_1361490_+	SINE	Alu	AluYm1
CAediting_1078437	chr16_1361497_+	SINE	Alu	AluYm1
CAediting_1078438	chr16_1361523_+	SINE	Alu	AluYm1
CAediting_1078439	chr16_1361529_+	SINE	Alu	AluYm1
CAediting_1078440	chr16_1361533_+	SINE	Alu	AluYm1
CAediting_1078441	chr16_1361540_+	SINE	Alu	AluYm1
CAediting_1078442	chr16_1361546_+	SINE	Alu	AluYm1
CAediting_1078443	chr16_1361550_+	SINE	Alu	AluYm1
CAediting_1078444	chr16_1361555_+	SINE	Alu	AluYm1
CAediting_1078445	chr16_1361556_+	SINE	Alu	AluYm1
CAediting_1078446	chr16_1361564_+	SINE	Alu	AluYm1
CAediting_1078447	chr16_1361565_+	SINE	Alu	AluYm1
CAediting_1078448	chr16_1361585_+	SINE	Alu	AluYm1
CAediting_1078449	chr16_1361589_+	SINE	Alu	AluYm1
CAediting_1078450	chr16_1361604_+	SINE	Alu	AluYm1
CAediting_1078451	chr16_1361614_+	SINE	Alu	AluYm1
CAediting_1078452	chr16_1361654_+	SINE	Alu	AluYm1

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RNA A-to-I editing events in the alternative splicing sites for GNPTG

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000090581.8.GNPTG.

Correlation between RNA A-to-I editing and PSI for ENSG00000090581.8.GNPTG.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GNPTG

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for GNPTG

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for GNPTG

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1078427	chr16_1357787_+	ENSG00000090581.8	ENST00000526820	hsa-miR-4769-3p	1357783	1357789	7mer-m8	1357769	1357790	152.00	-18.43
CAediting_1078427	chr16_1357787_+	ENSG00000090581.8	ENST00000526820	hsa-miR-5002-3p	1357785	1357792	8mer-1a	1357773	1357792	147.00	-20.62
CAediting_1078427	chr16_1357787_+	ENSG00000090581.8	ENST00000526820	hsa-miR-6817-5p	1357783	1357789	7mer-m8	1357764	1357790	148.00	-22.76
CAediting_1078427	chr16_1357787_+	ENSG00000090581.8	ENST00000527876	hsa-miR-4769-3p	1357783	1357789	7mer-m8	1357769	1357790	152.00	-18.43
CAediting_1078427	chr16_1357787_+	ENSG00000090581.8	ENST00000527876	hsa-miR-5002-3p	1357785	1357792	8mer-1a	1357773	1357792	147.00	-20.62
CAediting_1078427	chr16_1357787_+	ENSG00000090581.8	ENST00000527876	hsa-miR-6817-5p	1357783	1357789	7mer-m8	1357764	1357790	148.00	-22.76
CAediting_1078428	chr16_1357800_+	ENSG00000090581.8	ENST00000526820	hsa-miR-3960	1357797	1357803	7mer-m8	1357784	1357804	148.00	-22.23
CAediting_1078428	chr16_1357800_+	ENSG00000090581.8	ENST00000526820	hsa-miR-8072	1357797	1357803	7mer-m8	1357785	1357804	140.00	-17.96
CAediting_1078428	chr16_1357800_+	ENSG00000090581.8	ENST00000527876	hsa-miR-3960	1357797	1357803	7mer-m8	1357784	1357804	148.00	-22.23
CAediting_1078428	chr16_1357800_+	ENSG00000090581.8	ENST00000527876	hsa-miR-8072	1357797	1357803	7mer-m8	1357785	1357804	140.00	-17.96

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1078427	chr16_1357787_+	ENSG00000090581.8	ENST00000526820	hsa-miR-215-3p	1357783	1357789	7mer-m8	1357768	1357790	147	-14.88
CAediting_1078427	chr16_1357787_+	ENSG00000090581.8	ENST00000527876	hsa-miR-215-3p	1357783	1357789	7mer-m8	1357768	1357790	147	-14.88

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1054808	chr15_66496985_-	ENSG00000090581.8	ENST00000204679	hsa-miR-4512	1363721	1363728	8mer-1a	1363708	1363728	155	-25.66
CAediting_1229414	chr17_67471546_+	ENSG00000090581.8	ENST00000204679	hsa-miR-548aa	1363791	1363797	7mer-m8	1363774	1363798	143	-9.71
CAediting_1351755	chr19_40282625_-	ENSG00000090581.8	ENST00000204679	hsa-miR-641	1364017	1364023	7mer-m8	1364001	1364024	140	-13.44
CAediting_1368054	chr19_46709310_-	ENSG00000090581.8	ENST00000204679	hsa-miR-320e	1363569	1363575	7mer-m8	1363559	1363576	146	-17.02
CAediting_1368054	chr19_46709310_-	ENSG00000090581.8	ENST00000204679	hsa-miR-320e	1363889	1363895	7mer-m8	1363881	1363896	147	-21
CAediting_86358	chr1_109598906_+	ENSG00000090581.8	ENST00000204679	hsa-miR-197-5p	1363873	1363878	6mer	1363857	1363879	146	-36.34
CAediting_524911	chr7_5495852_-	ENSG00000090581.8	ENST00000527876	hsa-miR-589-3p	1358249	1358255	7mer-m8	1358233	1358256	148	-14.47
CAediting_1524209	chrX_134546392_-	ENSG00000090581.8	ENST00000204679	hsa-miR-503-5p	1363774	1363781	8mer-1a	1363759	1363781	144	-20.32

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for GNPTG

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for GNPTG

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LGG	CAediting_1078375	chr16_1353641_+	.	.	.	.	0.00080306699465857	0.334781085349036
BRCA	CAediting_1078400	chr16_1354439_+	0.00646063934071993	0.262968996719	.	.	.	.
OV	CAediting_1078400	chr16_1354439_+	0.0221330058086039	0.273172253448605	.	.	.	.
BRCA	CAediting_1078404	chr16_1354465_+	0.0135891428336327	0.197234958987037	.	.	.	.

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Relation with cancer stages for GNPTG

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
ESCA	clinical_stage	CAediting_1078404	chr16_1354465_+	0.0479214711350527	-0.536540856263283
KIRC	pathologic_stage	CAediting_1078402	chr16_1354449_+	0.00564205632609887	0.339635124218542

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Relation with survival for GNPTG

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
BRCA	CAediting_1078399	chr16_1354435_+	0.0176688791415421	0.0488169	2.8547e-08

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RelatedDrugs for GNPTG

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for GNPTG

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
GNPTG	C1854896	Mucolipidosis III Gamma	11	CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene