CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: RAB11FIP4 (CAeditome ID:84440)

Gene summary for RAB11FIP4

check button Gene summary
Gene informationGene symbol

RAB11FIP4

Gene ID

84440

Gene nameRAB11 family interacting protein 4
SynonymsFIP4-Rab11|RAB11-FIP4
Cytomap

17q11.2

Type of geneprotein-coding
Descriptionrab11 family-interacting protein 4RAB11 family interacting protein 4 (class II)arfophilin-2
Modification date20210518
UniProtAcc

Q86YS3

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
RAB11FIP4

GO:0042803

Rab11 family-interacting protein 4

12470645

RAB11FIP4

GO:0005768

Rab11 family-interacting protein 4

20682791

RAB11FIP4

GO:0030139

Rab11 family-interacting protein 4

20682791

RAB11FIP4

GO:0030496

Rab11 family-interacting protein 4

15601896

RAB11FIP4

GO:0030496

Rab11 family-interacting protein 4

16148947

RAB11FIP4

GO:0032154

Rab11 family-interacting protein 4

15601896

RAB11FIP4

GO:0032154

Rab11 family-interacting protein 4

16148947

RAB11FIP4

GO:0055038

Rab11 family-interacting protein 4

12470645


Top

RNA A-to-I events for RAB11FIP4

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000131242.14
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1180031(31442840, +), CAediting_1180032(31448265, +), CAediting_1180033(31448319, +), CAediting_1180034(31448325, +), CAediting_1180035(31448326, +), CAediting_1180036(31448441, +), CAediting_1180037(31448452, +), CAediting_1180038(31449645, +), CAediting_1180039(31449654, +), CAediting_1180040(31449671, +), CAediting_1180041(31449681, +), CAediting_1180042(31449806, +), CAediting_1180043(31449833, +), CAediting_1180044(31450414, +), CAediting_1180045(31450470, +), CAediting_1180046(31450511, +), CAediting_1180047(31450528, +), CAediting_1180048(31450554, +), CAediting_1180049(31451294, +), CAediting_1180050(31453160, +), CAediting_1180051(31453161, +), CAediting_1180052(31453230, +), CAediting_1180053(31453704, +), CAediting_1180054(31453711, +), CAediting_1180055(31453714, +), CAediting_1180056(31453717, +), CAediting_1180057(31453750, +), CAediting_1180058(31454512, +), CAediting_1180059(31454738, +), CAediting_1180060(31454741, +), CAediting_1180061(31454790, +), CAediting_1180062(31454795, +), CAediting_1180063(31456243, +), CAediting_1180064(31456257, +), CAediting_1180065(31456319, +), CAediting_1180066(31456324, +), CAediting_1180067(31456416, +), CAediting_1180068(31456459, +), CAediting_1180069(31460824, +), CAediting_1180070(31460843, +), CAediting_1180071(31460864, +), CAediting_1180072(31469506, +), CAediting_1180073(31482444, +), CAediting_1180074(31482471, +), CAediting_1180075(31482511, +), CAediting_1180076(31483072, +), CAediting_1180077(31495474, +), CAediting_1180078(31495475, +), CAediting_1180079(31495487, +), CAediting_1180080(31499380, +), CAediting_1180081(31499388, +), CAediting_1180082(31500912, +), CAediting_1180083(31508042, +), CAediting_1180084(31516609, +), CAediting_1180085(31518215, +), CAediting_1180086(31518231, +), CAediting_1180087(31518237, +), CAediting_1180088(31518238, +), CAediting_1180089(31518278, +), CAediting_1180090(31518283, +), CAediting_1180091(31518297, +), CAediting_1180092(31518496, +), CAediting_1180093(31519857, +), CAediting_1180094(31519858, +), CAediting_1180095(31519863, +), CAediting_1180096(31519866, +), CAediting_1180097(31519888, +), CAediting_1180098(31519903, +), CAediting_1180099(31519949, +), CAediting_1180100(31519952, +), CAediting_1180101(31519953, +), CAediting_1180102(31519954, +), CAediting_1180103(31519955, +), CAediting_1180104(31519956, +), CAediting_1180105(31519958, +), CAediting_1180106(31519963, +), CAediting_1180107(31519966, +), CAediting_1180108(31519982, +), CAediting_1180109(31520004, +), CAediting_1180110(31520017, +), CAediting_1180111(31520026, +), CAediting_1180112(31520076, +), CAediting_1180113(31520077, +), CAediting_1180114(31520081, +), CAediting_1180115(31520714, +), CAediting_1180116(31526823, +), CAediting_1180117(31526829, +), CAediting_1180118(31526865, +), CAediting_1180119(31526876, +), CAediting_1180120(31526899, +), CAediting_1180121(31534285, +), CAediting_1180122(31534287, +), CAediting_1180123(31534289, +), CAediting_1180124(31534291, +), CAediting_1180125(31534294, +), CAediting_1180126(31534323, +), CAediting_1180127(31534345, +), CAediting_1180128(31534355, +), CAediting_1180129(31534361, +), CAediting_1180130(31534367, +), CAediting_1180131(31534372, +), CAediting_1180132(31534385, +), CAediting_1180133(31534386, +), CAediting_1180134(31534394, +), CAediting_1180135(31534407, +), CAediting_1180136(31534413, +), CAediting_1180137(31534429, +), CAediting_1180138(31534452, +), CAediting_1180139(31534458, +), CAediting_1180140(31534497, +), CAediting_1180141(31534510, +), CAediting_1180142(31534515, +), CAediting_1180143(31534523, +), CAediting_1180144(31534525, +), CAediting_1180145(31534537, +), CAediting_1180146(31534539, +), CAediting_1180147(31534543, +), CAediting_1180148(31534546, +), CAediting_1180149(31534553, +), CAediting_1180150(31534570, +), CAediting_1180151(31535126, +), CAediting_1180152(31535129, +), CAediting_1180153(31535131, +), CAediting_1180154(31535137, +), CAediting_1180155(31535164, +), CAediting_1180156(31535165, +), CAediting_1180157(31535173, +), CAediting_1180158(31535180, +), CAediting_1180159(31535184, +), CAediting_1180160(31535199, +), CAediting_1180161(31535204, +), CAediting_1180162(31535232, +), CAediting_1180163(31535233, +), CAediting_1180164(31535320, +), CAediting_1180165(31535360, +), CAediting_1180166(31535439, +), CAediting_1180167(31536221, +), CAediting_1180168(31536233, +), CAediting_1180169(31536239, +), CAediting_1180170(31536240, +), CAediting_1180171(31536245, +), CAediting_1180172(31536248, +), CAediting_1180173(31536261, +), CAediting_1180174(31536262, +), CAediting_1180175(31536266, +), CAediting_1180176(31536280, +), CAediting_1180177(31536285, +), CAediting_1180178(31536296, +), CAediting_1180179(31536309, +), CAediting_1180180(31536331, +), CAediting_1180181(31536354, +),

Top

RNA editing positional annotations for RAB11FIP4 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1180031chr17_31442840_+ncRNA_intronic
CAediting_1180032chr17_31448265_+ncRNA_intronic
CAediting_1180033chr17_31448319_+ncRNA_intronic
CAediting_1180034chr17_31448325_+ncRNA_intronic
CAediting_1180035chr17_31448326_+ncRNA_intronic
CAediting_1180036chr17_31448441_+ncRNA_exonic
CAediting_1180037chr17_31448452_+ncRNA_exonic
CAediting_1180038chr17_31449645_+intronic
CAediting_1180039chr17_31449654_+intronic
CAediting_1180040chr17_31449671_+intronic
CAediting_1180041chr17_31449681_+intronic
CAediting_1180042chr17_31449806_+intronic
CAediting_1180043chr17_31449833_+intronic
CAediting_1180044chr17_31450414_+intronic
CAediting_1180045chr17_31450470_+intronic
CAediting_1180046chr17_31450511_+intronic
CAediting_1180047chr17_31450528_+intronic
CAediting_1180048chr17_31450554_+intronic
CAediting_1180049chr17_31451294_+intronic
CAediting_1180050chr17_31453160_+intronic
CAediting_1180051chr17_31453161_+intronic
CAediting_1180052chr17_31453230_+intronic
CAediting_1180053chr17_31453704_+intronic
CAediting_1180054chr17_31453711_+intronic
CAediting_1180055chr17_31453714_+intronic
CAediting_1180056chr17_31453717_+intronic
CAediting_1180057chr17_31453750_+intronic
CAediting_1180058chr17_31454512_+intronic
CAediting_1180059chr17_31454738_+intronic
CAediting_1180060chr17_31454741_+intronic
CAediting_1180061chr17_31454790_+intronic
CAediting_1180062chr17_31454795_+intronic
CAediting_1180063chr17_31456243_+intronic
CAediting_1180064chr17_31456257_+intronic
CAediting_1180065chr17_31456319_+intronic
CAediting_1180066chr17_31456324_+intronic
CAediting_1180067chr17_31456416_+intronic
CAediting_1180068chr17_31456459_+intronic
CAediting_1180069chr17_31460824_+intronic
CAediting_1180070chr17_31460843_+intronic
CAediting_1180071chr17_31460864_+intronic
CAediting_1180072chr17_31469506_+intronic
CAediting_1180073chr17_31482444_+intronic
CAediting_1180074chr17_31482471_+intronic
CAediting_1180075chr17_31482511_+intronic
CAediting_1180076chr17_31483072_+intronic
CAediting_1180077chr17_31495474_+intronic
CAediting_1180078chr17_31495475_+intronic
CAediting_1180079chr17_31495487_+intronic
CAediting_1180080chr17_31499380_+intronic
CAediting_1180081chr17_31499388_+intronic
CAediting_1180082chr17_31500912_+intronic
CAediting_1180083chr17_31508042_+intronic
CAediting_1180084chr17_31516609_+intronic
CAediting_1180085chr17_31518215_+intronic
CAediting_1180086chr17_31518231_+intronic
CAediting_1180087chr17_31518237_+intronic
CAediting_1180088chr17_31518238_+intronic
CAediting_1180089chr17_31518278_+intronic
CAediting_1180090chr17_31518283_+intronic
CAediting_1180091chr17_31518297_+intronic
CAediting_1180092chr17_31518496_+ncRNA_exonic
CAediting_1180093chr17_31519857_+intronic
CAediting_1180094chr17_31519858_+intronic
CAediting_1180095chr17_31519863_+intronic
CAediting_1180096chr17_31519866_+intronic
CAediting_1180097chr17_31519888_+intronic
CAediting_1180098chr17_31519903_+intronic
CAediting_1180099chr17_31519949_+intronic
CAediting_1180100chr17_31519952_+intronic
CAediting_1180101chr17_31519953_+intronic
CAediting_1180102chr17_31519954_+intronic
CAediting_1180103chr17_31519955_+intronic
CAediting_1180104chr17_31519956_+intronic
CAediting_1180105chr17_31519958_+intronic
CAediting_1180106chr17_31519963_+intronic
CAediting_1180107chr17_31519966_+intronic
CAediting_1180108chr17_31519982_+intronic
CAediting_1180109chr17_31520004_+intronic
CAediting_1180110chr17_31520017_+intronic
CAediting_1180111chr17_31520026_+intronic
CAediting_1180112chr17_31520076_+intronic
CAediting_1180113chr17_31520077_+intronic
CAediting_1180114chr17_31520081_+intronic
CAediting_1180115chr17_31520714_+intronic
CAediting_1180116chr17_31526823_+ncRNA_exonic
CAediting_1180117chr17_31526829_+ncRNA_exonic
CAediting_1180118chr17_31526865_+ncRNA_exonic
CAediting_1180119chr17_31526876_+ncRNA_exonic
CAediting_1180120chr17_31526899_+ncRNA_exonic
CAediting_1180121chr17_31534285_+UTR3
CAediting_1180122chr17_31534287_+UTR3
CAediting_1180123chr17_31534289_+UTR3
CAediting_1180124chr17_31534291_+UTR3
CAediting_1180125chr17_31534294_+UTR3
CAediting_1180126chr17_31534323_+UTR3
CAediting_1180127chr17_31534345_+UTR3
CAediting_1180128chr17_31534355_+UTR3
CAediting_1180129chr17_31534361_+UTR3
CAediting_1180130chr17_31534367_+UTR3
CAediting_1180131chr17_31534372_+UTR3
CAediting_1180132chr17_31534385_+UTR3
CAediting_1180133chr17_31534386_+UTR3
CAediting_1180134chr17_31534394_+UTR3
CAediting_1180135chr17_31534407_+UTR3
CAediting_1180136chr17_31534413_+UTR3
CAediting_1180137chr17_31534429_+UTR3
CAediting_1180138chr17_31534452_+UTR3
CAediting_1180139chr17_31534458_+UTR3
CAediting_1180140chr17_31534497_+UTR3
CAediting_1180141chr17_31534510_+UTR3
CAediting_1180142chr17_31534515_+UTR3
CAediting_1180143chr17_31534523_+UTR3
CAediting_1180144chr17_31534525_+UTR3
CAediting_1180145chr17_31534537_+UTR3
CAediting_1180146chr17_31534539_+UTR3
CAediting_1180147chr17_31534543_+UTR3
CAediting_1180148chr17_31534546_+UTR3
CAediting_1180149chr17_31534553_+UTR3
CAediting_1180150chr17_31534570_+UTR3
CAediting_1180151chr17_31535126_+UTR3
CAediting_1180152chr17_31535129_+UTR3
CAediting_1180153chr17_31535131_+UTR3
CAediting_1180154chr17_31535137_+UTR3
CAediting_1180155chr17_31535164_+UTR3
CAediting_1180156chr17_31535165_+UTR3
CAediting_1180157chr17_31535173_+UTR3
CAediting_1180158chr17_31535180_+UTR3
CAediting_1180159chr17_31535184_+UTR3
CAediting_1180160chr17_31535199_+UTR3
CAediting_1180161chr17_31535204_+UTR3
CAediting_1180162chr17_31535232_+UTR3
CAediting_1180163chr17_31535233_+UTR3
CAediting_1180164chr17_31535320_+UTR3
CAediting_1180165chr17_31535360_+UTR3
CAediting_1180166chr17_31535439_+UTR3
CAediting_1180167chr17_31536221_+UTR3
CAediting_1180168chr17_31536233_+UTR3
CAediting_1180169chr17_31536239_+UTR3
CAediting_1180170chr17_31536240_+UTR3
CAediting_1180171chr17_31536245_+UTR3
CAediting_1180172chr17_31536248_+UTR3
CAediting_1180173chr17_31536261_+UTR3
CAediting_1180174chr17_31536262_+UTR3
CAediting_1180175chr17_31536266_+UTR3
CAediting_1180176chr17_31536280_+UTR3
CAediting_1180177chr17_31536285_+UTR3
CAediting_1180178chr17_31536296_+UTR3
CAediting_1180179chr17_31536309_+UTR3
CAediting_1180180chr17_31536331_+UTR3
CAediting_1180181chr17_31536354_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1180031chr17_31442840_+SINEAluAluSx
CAediting_1180032chr17_31448265_+SINEAluAluJr
CAediting_1180033chr17_31448319_+SINEAluAluJr
CAediting_1180034chr17_31448325_+SINEAluAluJr
CAediting_1180035chr17_31448326_+SINEAluAluJr
CAediting_1180036chr17_31448441_+SINEAluAluJr
CAediting_1180037chr17_31448452_+SINEAluAluJr
CAediting_1180038chr17_31449645_+SINEAluAluJr
CAediting_1180039chr17_31449654_+SINEAluAluJr
CAediting_1180040chr17_31449671_+SINEAluAluJr
CAediting_1180041chr17_31449681_+SINEAluAluJr
CAediting_1180042chr17_31449806_+SINEAluAluJr
CAediting_1180043chr17_31449833_+SINEAluAluJr
CAediting_1180044chr17_31450414_+SINEAluAluSz
CAediting_1180045chr17_31450470_+SINEAluAluSz
CAediting_1180046chr17_31450511_+SINEAluAluSz
CAediting_1180047chr17_31450528_+SINEAluAluSz
CAediting_1180048chr17_31450554_+SINEAluAluSz
CAediting_1180049chr17_31451294_+SINEAluAluSx1
CAediting_1180050chr17_31453160_+SINEAluAluJr
CAediting_1180051chr17_31453161_+SINEAluAluJr
CAediting_1180052chr17_31453230_+SINEAluAluJr
CAediting_1180053chr17_31453704_+SINEAluAluSx
CAediting_1180054chr17_31453711_+SINEAluAluSx
CAediting_1180055chr17_31453714_+SINEAluAluSx
CAediting_1180056chr17_31453717_+SINEAluAluSx
CAediting_1180057chr17_31453750_+SINEAluAluSx
CAediting_1180058chr17_31454512_+SINEAluAluSz
CAediting_1180059chr17_31454738_+SINEAluAluSz
CAediting_1180060chr17_31454741_+SINEAluAluSz
CAediting_1180061chr17_31454790_+SINEAluAluSz
CAediting_1180062chr17_31454795_+SINEAluAluSz
CAediting_1180063chr17_31456243_+SINEAluAluJb
CAediting_1180064chr17_31456257_+SINEAluAluJb
CAediting_1180065chr17_31456319_+SINEAluAluJb
CAediting_1180066chr17_31456324_+SINEAluAluJb
CAediting_1180067chr17_31456416_+SINEAluAluJb
CAediting_1180068chr17_31456459_+SINEAluAluJb
CAediting_1180069chr17_31460824_+SINEAluAluJr
CAediting_1180070chr17_31460843_+SINEAluAluJr
CAediting_1180071chr17_31460864_+SINEAluAluJr
CAediting_1180072chr17_31469506_+SINEAluAluJb
CAediting_1180073chr17_31482444_+SINEAluAluSz6
CAediting_1180074chr17_31482471_+SINEAluAluSz6
CAediting_1180075chr17_31482511_+SINEAluAluSz6
CAediting_1180076chr17_31483072_+SINEAluAluSg
CAediting_1180077chr17_31495474_+SINEAluAluJr
CAediting_1180078chr17_31495475_+SINEAluAluJr
CAediting_1180079chr17_31495487_+SINEAluAluJr
CAediting_1180080chr17_31499380_+SINEAluAluSc5
CAediting_1180081chr17_31499388_+SINEAluAluSc5
CAediting_1180082chr17_31500912_+SINEAluAluSc
CAediting_1180083chr17_31508042_+SINEAluAluJb
CAediting_1180084chr17_31516609_+SINEAluAluYk4
CAediting_1180085chr17_31518215_+SINEAluAluJr4
CAediting_1180086chr17_31518231_+SINEAluAluJr4
CAediting_1180087chr17_31518237_+SINEAluAluJr4
CAediting_1180088chr17_31518238_+SINEAluAluJr4
CAediting_1180089chr17_31518278_+SINEAluAluJr4
CAediting_1180090chr17_31518283_+SINEAluAluJr4
CAediting_1180091chr17_31518297_+SINEAluAluJr4
CAediting_1180092chr17_31518496_+srpRNAsrpRNA7SLRNA
CAediting_1180093chr17_31519857_+SINEAluAluSx1
CAediting_1180094chr17_31519858_+SINEAluAluSx1
CAediting_1180095chr17_31519863_+SINEAluAluSx1
CAediting_1180096chr17_31519866_+SINEAluAluSx1
CAediting_1180097chr17_31519888_+SINEAluAluSx1
CAediting_1180098chr17_31519903_+SINEAluAluSx1
CAediting_1180099chr17_31519949_+SINEAluAluSx1
CAediting_1180100chr17_31519952_+SINEAluAluSx1
CAediting_1180101chr17_31519953_+SINEAluAluSx1
CAediting_1180102chr17_31519954_+SINEAluAluSx1
CAediting_1180103chr17_31519955_+SINEAluAluSx1
CAediting_1180104chr17_31519956_+SINEAluAluSx1
CAediting_1180105chr17_31519958_+SINEAluAluSx1
CAediting_1180106chr17_31519963_+SINEAluAluSx1
CAediting_1180107chr17_31519966_+SINEAluAluSx1
CAediting_1180108chr17_31519982_+SINEAluAluSx1
CAediting_1180109chr17_31520004_+SINEAluAluSx1
CAediting_1180110chr17_31520017_+SINEAluAluSx1
CAediting_1180111chr17_31520026_+SINEAluAluSx1
CAediting_1180112chr17_31520076_+SINEAluAluSx1
CAediting_1180113chr17_31520077_+SINEAluAluSx1
CAediting_1180114chr17_31520081_+SINEAluAluSx1
CAediting_1180115chr17_31520714_+SINEAluAluY
CAediting_1180116chr17_31526823_+SINEAluAluSc
CAediting_1180117chr17_31526829_+SINEAluAluSc
CAediting_1180118chr17_31526865_+SINEAluAluSc
CAediting_1180119chr17_31526876_+SINEAluAluSc
CAediting_1180120chr17_31526899_+SINEAluAluSc
CAediting_1180121chr17_31534285_+SINEAluAluJr
CAediting_1180122chr17_31534287_+SINEAluAluJr
CAediting_1180123chr17_31534289_+SINEAluAluJr
CAediting_1180124chr17_31534291_+SINEAluAluJr
CAediting_1180125chr17_31534294_+SINEAluAluJr
CAediting_1180126chr17_31534323_+SINEAluAluJr
CAediting_1180127chr17_31534345_+SINEAluAluJr
CAediting_1180128chr17_31534355_+SINEAluAluJr
CAediting_1180129chr17_31534361_+SINEAluAluJr
CAediting_1180130chr17_31534367_+SINEAluAluJr
CAediting_1180131chr17_31534372_+SINEAluAluJr
CAediting_1180132chr17_31534385_+SINEAluAluJr
CAediting_1180133chr17_31534386_+SINEAluAluJr
CAediting_1180134chr17_31534394_+SINEAluAluJr
CAediting_1180135chr17_31534407_+SINEAluAluJr
CAediting_1180136chr17_31534413_+SINEAluAluJr
CAediting_1180137chr17_31534429_+SINEAluAluJr
CAediting_1180138chr17_31534452_+SINEAluAluJr
CAediting_1180139chr17_31534458_+SINEAluAluJr
CAediting_1180140chr17_31534497_+SINEAluAluJr
CAediting_1180141chr17_31534510_+SINEAluAluJr
CAediting_1180142chr17_31534515_+SINEAluAluJr
CAediting_1180143chr17_31534523_+SINEAluAluJr
CAediting_1180144chr17_31534525_+SINEAluAluJr
CAediting_1180145chr17_31534537_+SINEAluAluJr
CAediting_1180146chr17_31534539_+SINEAluAluJr
CAediting_1180147chr17_31534543_+SINEAluAluJr
CAediting_1180148chr17_31534546_+SINEAluAluJr
CAediting_1180149chr17_31534553_+SINEAluAluJr
CAediting_1180151chr17_31535126_+SINEAluAluJb
CAediting_1180152chr17_31535129_+SINEAluAluJb
CAediting_1180153chr17_31535131_+SINEAluAluJb
CAediting_1180154chr17_31535137_+SINEAluAluJb
CAediting_1180155chr17_31535164_+SINEAluAluJb
CAediting_1180156chr17_31535165_+SINEAluAluJb
CAediting_1180157chr17_31535173_+SINEAluAluJb
CAediting_1180158chr17_31535180_+SINEAluAluJb
CAediting_1180159chr17_31535184_+SINEAluAluJb
CAediting_1180160chr17_31535199_+SINEAluAluJb
CAediting_1180161chr17_31535204_+SINEAluAluJb
CAediting_1180162chr17_31535232_+SINEAluAluJb
CAediting_1180163chr17_31535233_+SINEAluAluJb
CAediting_1180164chr17_31535320_+DNAhAT-CharlieMER5B
CAediting_1180165chr17_31535360_+DNAhAT-CharlieMER5B
CAediting_1180166chr17_31535439_+DNAhAT-CharlieMER5B
CAediting_1180167chr17_31536221_+SINEAluAluSx
CAediting_1180168chr17_31536233_+SINEAluAluSx
CAediting_1180169chr17_31536239_+SINEAluAluSx
CAediting_1180170chr17_31536240_+SINEAluAluSx
CAediting_1180171chr17_31536245_+SINEAluAluSx
CAediting_1180172chr17_31536248_+SINEAluAluSx
CAediting_1180173chr17_31536261_+SINEAluAluSx
CAediting_1180174chr17_31536262_+SINEAluAluSx
CAediting_1180175chr17_31536266_+SINEAluAluSx
CAediting_1180176chr17_31536280_+SINEAluAluSx
CAediting_1180177chr17_31536285_+SINEAluAluSx
CAediting_1180178chr17_31536296_+SINEAluAluSx
CAediting_1180179chr17_31536309_+SINEAluAluSx
CAediting_1180180chr17_31536331_+SINEAluAluSx
CAediting_1180181chr17_31536354_+SINEAluAluSx

Top

RNA A-to-I editing events in the alternative splicing sites for RAB11FIP4

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000131242.14.RAB11FIP4.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000131242.14.RAB11FIP4.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for RAB11FIP4

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
LGG.CAediting_1180121.ENSG00000131242.RAB11FIP4.png
Soverview
LGG.CAediting_1180138.ENSG00000131242.RAB11FIP4.png
Soverview
LGG.CAediting_1180141.ENSG00000131242.RAB11FIP4.png
Soverview
LGG.CAediting_1180164.ENSG00000131242.RAB11FIP4.png
Soverview
TGCT.CAediting_1180121.ENSG00000131242.RAB11FIP4.png
Soverview
TGCT.CAediting_1180138.ENSG00000131242.RAB11FIP4.png
Soverview
TGCT.CAediting_1180145.ENSG00000131242.RAB11FIP4.png
Soverview

Top

Protein coding region RNA A-to-I editings for RAB11FIP4

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for RAB11FIP4

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1351755chr19_40282625_-ENSG00000131242.14ENST00000394744hsa-miR-64131531832315318387mer-m83153181731531839150-15.56
CAediting_1229414chr17_67471546_+ENSG00000131242.14ENST00000579589hsa-miR-548aa31509448315094547mer-m83150943131509455145-20.3
CAediting_1054808chr15_66496985_-ENSG00000131242.14ENST00000579589hsa-miR-451231517664315176718mer-1a3151765031517671143-22.04
CAediting_1054808chr15_66496985_-ENSG00000131242.14ENST00000578694hsa-miR-451231517664315176718mer-1a3151765031517671143-22.04
CAediting_1524209chrX_134546392_-ENSG00000131242.14ENST00000578694hsa-miR-503-5p31488423314884308mer-1a3148840931488430151-24.33

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network
boxplot

Top

The effects of the RNA editing to the stability of the RNA structures for RAB11FIP4

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for RAB11FIP4

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BLCACAediting_1180121chr17_31534285_+0.02306073412022280.2554813947050430.01753435754827170.266635382486702..
LGGCAediting_1180121chr17_31534285_+0.006268785820800310.1323942307302141.27748850079919e-080.27155667639957..
BRCACAediting_1180121chr17_31534285_+3.62166058798539e-100.273257242531241....
LUADCAediting_1180121chr17_31534285_+0.001199703072844540.266407837017317....
COADCAediting_1180121chr17_31534285_+0.001833685837310040.240109075777322....
STADCAediting_1180121chr17_31534285_+0.0002135226213599670.207817342807586....
THCACAediting_1180121chr17_31534285_+0.0070046548390370.174009595233971....
KIRCCAediting_1180121chr17_31534285_+0.0402866983041830.288189528947988....
UCECCAediting_1180121chr17_31534285_+0.001669922867984730.350230314970506....
ESCACAediting_1180121chr17_31534285_+1.08128014478266e-050.400897925389292....
OVCAediting_1180121chr17_31534285_+1.78794799254585e-080.328058327825423....
SKCMCAediting_1180121chr17_31534285_+0.01540175572353150.316783737386126....
READCAediting_1180121chr17_31534285_+0.02609616467627120.284817717018006....
BRCACAediting_1180132chr17_31534385_+0.009132118469122440.126474995102075....
OVCAediting_1180132chr17_31534385_+0.02277543528665660.154193097065536....
LGGCAediting_1180135chr17_31534407_+0.008259590503845870.224822392674662....
BRCACAediting_1180135chr17_31534407_+0.02087865637427720.223130029998946....
BLCACAediting_1180138chr17_31534452_+6.17722046986188e-050.420413985043552....
LGGCAediting_1180138chr17_31534452_+5.30847886183234e-060.2170312824580730.0007371734850143380.161794963598719..
BRCACAediting_1180138chr17_31534452_+5.70419845669808e-260.446116430065507....
CESCCAediting_1180138chr17_31534452_+0.004958017187747250.383920814873873....
LUADCAediting_1180138chr17_31534452_+0.0005569188528185310.308044700330761....
COADCAediting_1180138chr17_31534452_+1.58081758887431e-080.4111877760915990.01413331354398530.185213694163354..
LUSCCAediting_1180138chr17_31534452_+2.40026023543463e-050.501768719177811....
STADCAediting_1180138chr17_31534452_+9.56647168063882e-100.372459433028325....
THCACAediting_1180138chr17_31534452_+0.008249900855556430.167071263914734....
UCECCAediting_1180138chr17_31534452_+4.74107146956177e-060.43959885880922....
KIRPCAediting_1180138chr17_31534452_+0.00965690319540010.349175098641946....
ESCACAediting_1180138chr17_31534452_+0.01097620706935390.27303079439625....
OVCAediting_1180138chr17_31534452_+2.60805803399845e-080.356797673806473....
SKCMCAediting_1180138chr17_31534452_+1.79423053240807e-060.510534999486436....
READCAediting_1180138chr17_31534452_+0.003407722837965470.388163575981202....
LGGCAediting_1180141chr17_31534510_+0.01432934171430010.1439258947328659.8243375003724e-220.52347162256527..
BRCACAediting_1180141chr17_31534510_+1.37920806461399e-080.335664417560749....
OVCAediting_1180141chr17_31534510_+0.001088592472285270.269507976584747....
LGGCAediting_1180145chr17_31534537_+0.0001927323683534620.219501259086836....
BRCACAediting_1180145chr17_31534537_+4.56222477580468e-280.477819400011119....
LIHCCAediting_1180145chr17_31534537_+0.03588237750681240.291705631842255....
LUADCAediting_1180145chr17_31534537_+0.001016592471289630.289327188638727....
COADCAediting_1180145chr17_31534537_+0.003165786185737270.261966040956581....
STADCAediting_1180145chr17_31534537_+2.89402253028183e-050.356679748570843....
THCACAediting_1180145chr17_31534537_+0.02844910298124210.158574322422063....
ESCACAediting_1180145chr17_31534537_+0.005315772578876650.381082623670275....
OVCAediting_1180145chr17_31534537_+5.79845778752216e-060.350812781242311....
SKCMCAediting_1180145chr17_31534537_+3.59695280273073e-050.526826698614365....
TGCTCAediting_1180145chr17_31534537_+0.002333878391638380.413147500187953....
LGGCAediting_1180156chr17_31535165_+0.01208391198777450.288450049281531....
BLCACAediting_1180164chr17_31535320_+8.20363119670816e-050.433509568029587....
LGGCAediting_1180164chr17_31535320_+2.13086720468472e-050.2279877875436623.18028512899163e-070.272594419232704..
BRCACAediting_1180164chr17_31535320_+8.50801992954519e-330.502200593517413....
LIHCCAediting_1180164chr17_31535320_+1.22190447534641e-060.508989514305519....
CESCCAediting_1180164chr17_31535320_+0.02351961918947130.316784332862923....
LUADCAediting_1180164chr17_31535320_+0.0002160408517318130.29205988393593....
LUSCCAediting_1180164chr17_31535320_+0.005461401042133320.315749316604551....
THCACAediting_1180164chr17_31535320_+0.03880954531144530.150038450477662....
OVCAediting_1180164chr17_31535320_+0.0231632858437180.230432909639828....
SKCMCAediting_1180164chr17_31535320_+3.50036235068879e-050.479607551552349....
TGCTCAediting_1180164chr17_31535320_+5.11027110918027e-090.715866718384655....
BRCACAediting_1180175chr17_31536266_+0.02335359453067580.292465243341689....
STADCAediting_1180175chr17_31536266_+0.03586740079175110.154399582618824....
OVCAediting_1180175chr17_31536266_+0.0001922607966649770.239943470647012....

Top

Relation with cancer stages for RAB11FIP4

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_1180121chr17_31534285_+0.03158225704058350.245233350311443
ESCApathologic_stageCAediting_1180138chr17_31534452_+0.01232343026381110.301979341347163
OVclinical_stageCAediting_1180141chr17_31534510_+0.03899135069724370.173448153756596
READpathologic_stageCAediting_1180138chr17_31534452_+0.0250206627543023-0.316739171697315
SKCMpathologic_stageCAediting_1180145chr17_31534537_+0.01527475500814420.334766484714855
STADpathologic_stageCAediting_1180175chr17_31536266_+0.0495875861243137-0.146990841237241

Top

Relation with survival for RAB11FIP4

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
BLCACAediting_1180138chr17_31534452_+0.009748368006585520.003252340.0213115
UCECCAediting_1180138chr17_31534452_+0.005050075925551840.0058689649.8237
ESCACAediting_1180175chr17_31536266_+0.02288317215281070.024375495.7901

Top

RelatedDrugs for RAB11FIP4

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for RAB11FIP4

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource