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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: GFM2 (CAeditome ID:84340) |
Gene summary for GFM2 |
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Gene information | Gene symbol | GFM2 | Gene ID | 84340 |
Gene name | GTP dependent ribosome recycling factor mitochondrial 2 | |
Synonyms | EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 | |
Cytomap | 5q13.3 | |
Type of gene | protein-coding | |
Description | ribosome-releasing factor 2, mitochondrialG elongation factor mitochondrial 2mitochondrial elongation factor G2mitochondrial ribosome recycling factor 2mitochondrial ribosome-releasing factor 2ribosome releasing factor 2 | |
Modification date | 20210518 | |
UniProtAcc | Q969S9 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
GFM2 | GO:0003746 | Ribosome-releasing factor 2, mitochondrial | 19716793 |
GFM2 | GO:0070125 | Ribosome-releasing factor 2, mitochondrial | 19716793 |
GFM2 | GO:0003924 | Ribosome-releasing factor 2, mitochondrial | 19716793 |
GFM2 | GO:0032543 | Ribosome-releasing factor 2, mitochondrial | 19716793 |
GFM2 | GO:0032790 | Ribosome-releasing factor 2, mitochondrial | 19716793 |
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RNA A-to-I events for GFM2 |
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CAediting_415277(74726982, -), CAediting_415278(74728811, -), CAediting_415279(74728862, -), CAediting_415280(74728867, -), CAediting_415281(74728880, -), CAediting_415282(74728884, -), CAediting_415283(74728888, -), CAediting_415284(74728894, -), CAediting_415285(74728896, -), CAediting_415286(74728903, -), CAediting_415287(74728920, -), CAediting_415288(74728924, -), CAediting_415289(74728931, -), CAediting_415290(74728932, -), CAediting_415291(74728933, -), CAediting_415292(74728934, -), CAediting_415293(74728935, -), CAediting_415294(74728938, -), CAediting_415295(74728955, -), CAediting_415296(74728985, -), CAediting_415297(74728989, -), CAediting_415298(74729047, -), CAediting_415299(74732015, -), CAediting_415300(74732033, -), CAediting_415301(74732039, -), CAediting_415302(74732052, -), CAediting_415303(74732079, -), CAediting_415304(74732087, -), CAediting_415305(74732170, -), CAediting_415306(74732191, -), CAediting_415307(74742727, -), CAediting_415308(74742734, -), CAediting_415309(74742759, -), CAediting_415310(74742934, -), CAediting_415311(74745073, -), CAediting_415312(74745082, -), CAediting_415313(74745094, -), CAediting_415314(74745104, -), CAediting_415315(74745109, -), CAediting_415316(74745146, -), CAediting_415317(74745155, -), CAediting_415318(74745170, -), CAediting_415319(74745172, -), CAediting_415320(74745217, -), CAediting_415321(74745221, -), CAediting_415322(74745223, -), CAediting_415323(74745233, -), CAediting_415324(74745245, -), CAediting_415325(74745258, -), CAediting_415326(74745262, -), CAediting_415327(74745269, -), CAediting_415328(74745276, -), CAediting_415329(74745283, -), CAediting_415330(74745293, -), CAediting_415331(74745301, -), CAediting_415332(74745319, -), CAediting_415333(74745343, -), CAediting_415334(74764934, -), CAediting_415335(74764979, -), CAediting_415336(74764980, -), CAediting_415337(74764989, -), |
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RNA editing positional annotations for GFM2 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_415277 | chr5_74726982_- | ncRNA_intronic |
CAediting_415278 | chr5_74728811_- | ncRNA_intronic |
CAediting_415279 | chr5_74728862_- | ncRNA_intronic |
CAediting_415280 | chr5_74728867_- | ncRNA_intronic |
CAediting_415281 | chr5_74728880_- | ncRNA_intronic |
CAediting_415282 | chr5_74728884_- | ncRNA_intronic |
CAediting_415283 | chr5_74728888_- | ncRNA_intronic |
CAediting_415284 | chr5_74728894_- | ncRNA_intronic |
CAediting_415285 | chr5_74728896_- | ncRNA_intronic |
CAediting_415286 | chr5_74728903_- | ncRNA_intronic |
CAediting_415287 | chr5_74728920_- | ncRNA_intronic |
CAediting_415288 | chr5_74728924_- | ncRNA_intronic |
CAediting_415289 | chr5_74728931_- | ncRNA_intronic |
CAediting_415290 | chr5_74728932_- | ncRNA_intronic |
CAediting_415291 | chr5_74728933_- | ncRNA_intronic |
CAediting_415292 | chr5_74728934_- | ncRNA_intronic |
CAediting_415293 | chr5_74728935_- | ncRNA_intronic |
CAediting_415294 | chr5_74728938_- | ncRNA_intronic |
CAediting_415295 | chr5_74728955_- | ncRNA_intronic |
CAediting_415296 | chr5_74728985_- | ncRNA_intronic |
CAediting_415297 | chr5_74728989_- | ncRNA_intronic |
CAediting_415298 | chr5_74729047_- | ncRNA_intronic |
CAediting_415299 | chr5_74732015_- | ncRNA_intronic |
CAediting_415300 | chr5_74732033_- | ncRNA_intronic |
CAediting_415301 | chr5_74732039_- | ncRNA_intronic |
CAediting_415302 | chr5_74732052_- | ncRNA_intronic |
CAediting_415303 | chr5_74732079_- | ncRNA_intronic |
CAediting_415304 | chr5_74732087_- | ncRNA_intronic |
CAediting_415305 | chr5_74732170_- | ncRNA_intronic |
CAediting_415306 | chr5_74732191_- | ncRNA_intronic |
CAediting_415307 | chr5_74742727_- | intronic |
CAediting_415308 | chr5_74742734_- | intronic |
CAediting_415309 | chr5_74742759_- | intronic |
CAediting_415310 | chr5_74742934_- | intronic |
CAediting_415311 | chr5_74745073_- | intronic |
CAediting_415312 | chr5_74745082_- | intronic |
CAediting_415313 | chr5_74745094_- | intronic |
CAediting_415314 | chr5_74745104_- | intronic |
CAediting_415315 | chr5_74745109_- | intronic |
CAediting_415316 | chr5_74745146_- | intronic |
CAediting_415317 | chr5_74745155_- | intronic |
CAediting_415318 | chr5_74745170_- | intronic |
CAediting_415319 | chr5_74745172_- | intronic |
CAediting_415320 | chr5_74745217_- | intronic |
CAediting_415321 | chr5_74745221_- | intronic |
CAediting_415322 | chr5_74745223_- | intronic |
CAediting_415323 | chr5_74745233_- | intronic |
CAediting_415324 | chr5_74745245_- | intronic |
CAediting_415325 | chr5_74745258_- | intronic |
CAediting_415326 | chr5_74745262_- | intronic |
CAediting_415327 | chr5_74745269_- | intronic |
CAediting_415328 | chr5_74745276_- | intronic |
CAediting_415329 | chr5_74745283_- | intronic |
CAediting_415330 | chr5_74745293_- | intronic |
CAediting_415331 | chr5_74745301_- | intronic |
CAediting_415332 | chr5_74745319_- | intronic |
CAediting_415333 | chr5_74745343_- | intronic |
CAediting_415334 | chr5_74764934_- | intronic |
CAediting_415335 | chr5_74764979_- | intronic |
CAediting_415336 | chr5_74764980_- | intronic |
CAediting_415337 | chr5_74764989_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_415277 | chr5_74726982_- | SINE | Alu | AluJr |
CAediting_415278 | chr5_74728811_- | SINE | Alu | AluSg |
CAediting_415279 | chr5_74728862_- | SINE | Alu | AluSg |
CAediting_415280 | chr5_74728867_- | SINE | Alu | AluSg |
CAediting_415281 | chr5_74728880_- | SINE | Alu | AluSg |
CAediting_415282 | chr5_74728884_- | SINE | Alu | AluSg |
CAediting_415283 | chr5_74728888_- | SINE | Alu | AluSg |
CAediting_415284 | chr5_74728894_- | SINE | Alu | AluSg |
CAediting_415285 | chr5_74728896_- | SINE | Alu | AluSg |
CAediting_415286 | chr5_74728903_- | SINE | Alu | AluSg |
CAediting_415287 | chr5_74728920_- | SINE | Alu | AluSg |
CAediting_415288 | chr5_74728924_- | SINE | Alu | AluSg |
CAediting_415289 | chr5_74728931_- | SINE | Alu | AluSg |
CAediting_415290 | chr5_74728932_- | SINE | Alu | AluSg |
CAediting_415291 | chr5_74728933_- | SINE | Alu | AluSg |
CAediting_415292 | chr5_74728934_- | SINE | Alu | AluSg |
CAediting_415293 | chr5_74728935_- | SINE | Alu | AluSg |
CAediting_415294 | chr5_74728938_- | SINE | Alu | AluSg |
CAediting_415295 | chr5_74728955_- | SINE | Alu | AluSg |
CAediting_415296 | chr5_74728985_- | SINE | Alu | AluSg |
CAediting_415297 | chr5_74728989_- | SINE | Alu | AluSg |
CAediting_415298 | chr5_74729047_- | SINE | Alu | AluSg |
CAediting_415299 | chr5_74732015_- | SINE | Alu | AluJb |
CAediting_415300 | chr5_74732033_- | SINE | Alu | AluJb |
CAediting_415301 | chr5_74732039_- | SINE | Alu | AluJb |
CAediting_415302 | chr5_74732052_- | SINE | Alu | AluJb |
CAediting_415303 | chr5_74732079_- | SINE | Alu | AluJb |
CAediting_415304 | chr5_74732087_- | SINE | Alu | AluJb |
CAediting_415305 | chr5_74732170_- | SINE | Alu | AluJb |
CAediting_415306 | chr5_74732191_- | SINE | Alu | AluJb |
CAediting_415307 | chr5_74742727_- | SINE | Alu | AluSx3 |
CAediting_415308 | chr5_74742734_- | SINE | Alu | AluSx3 |
CAediting_415309 | chr5_74742759_- | SINE | Alu | AluSx3 |
CAediting_415310 | chr5_74742934_- | SINE | Alu | AluSx3 |
CAediting_415311 | chr5_74745073_- | SINE | Alu | AluSx |
CAediting_415312 | chr5_74745082_- | SINE | Alu | AluSx |
CAediting_415313 | chr5_74745094_- | SINE | Alu | AluSx |
CAediting_415314 | chr5_74745104_- | SINE | Alu | AluSx |
CAediting_415315 | chr5_74745109_- | SINE | Alu | AluSx |
CAediting_415316 | chr5_74745146_- | SINE | Alu | AluSx |
CAediting_415317 | chr5_74745155_- | SINE | Alu | AluSx |
CAediting_415318 | chr5_74745170_- | SINE | Alu | AluSx |
CAediting_415319 | chr5_74745172_- | SINE | Alu | AluSx |
CAediting_415320 | chr5_74745217_- | SINE | Alu | AluSx |
CAediting_415321 | chr5_74745221_- | SINE | Alu | AluSx |
CAediting_415322 | chr5_74745223_- | SINE | Alu | AluSx |
CAediting_415323 | chr5_74745233_- | SINE | Alu | AluSx |
CAediting_415324 | chr5_74745245_- | SINE | Alu | AluSx |
CAediting_415325 | chr5_74745258_- | SINE | Alu | AluSx |
CAediting_415326 | chr5_74745262_- | SINE | Alu | AluSx |
CAediting_415327 | chr5_74745269_- | SINE | Alu | AluSx |
CAediting_415328 | chr5_74745276_- | SINE | Alu | AluSx |
CAediting_415329 | chr5_74745283_- | SINE | Alu | AluSx |
CAediting_415330 | chr5_74745293_- | SINE | Alu | AluSx |
CAediting_415331 | chr5_74745301_- | SINE | Alu | AluSx |
CAediting_415332 | chr5_74745319_- | SINE | Alu | AluSx |
CAediting_415333 | chr5_74745343_- | SINE | Alu | AluSx |
CAediting_415334 | chr5_74764934_- | SINE | Alu | AluSz |
CAediting_415335 | chr5_74764979_- | SINE | Alu | AluSz |
CAediting_415336 | chr5_74764980_- | SINE | Alu | AluSz |
CAediting_415337 | chr5_74764989_- | SINE | Alu | AluSz |
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RNA A-to-I editing events in the alternative splicing sites for GFM2 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GFM2 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for GFM2 |
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The effects of the RNA editing to the miRNA binding sites for GFM2 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_396018 | chr5_1062918_- | ENSG00000164347.16 | ENST00000427854 | hsa-miR-4635 | 74736720 | 74736727 | 8mer-1a | 74736720 | 74736740 | 141 | -14.6 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for GFM2 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for GFM2 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for GFM2 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for GFM2 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for GFM2 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GFM2 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
GFM2 | C0023264 | Leigh Disease | 4 | CLINGEN |
GFM2 | C1838951 | LEIGH SYNDROME DUE TO MITOCHONDRIAL COMPLEX I DEFICIENCY | 4 | CLINGEN |
GFM2 | C1850597 | Leigh Syndrome Due To Mitochondrial Complex II Deficiency | 4 | CLINGEN |
GFM2 | C1850598 | Leigh Syndrome due to Mitochondrial Complex III Deficiency | 4 | CLINGEN |
GFM2 | C1850599 | Leigh Syndrome due to Mitochondrial Complex IV Deficiency | 4 | CLINGEN |
GFM2 | C1850600 | Leigh Syndrome due to Mitochondrial Complex V Deficiency | 4 | CLINGEN |
GFM2 | C2931891 | Necrotizing encephalopathy, infantile subacute, of Leigh | 4 | CLINGEN |
GFM2 | C0003886 | Arthrogryposis | 1 | GENOMICS_ENGLAND |