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Editing gene: NBPF3 (CAeditome ID:84224)

Gene summary for NBPF3

Gene summary

Gene information	Gene symbol	NBPF3
	Gene ID	84224
	Gene name	NBPF member 3
	Synonyms	AE2
	Cytomap	1p36.12
	Type of gene	protein-coding
	Description	neuroblastoma breakpoint family member 3protein SHIIIa4
	Modification date	20210518
	UniProtAcc	Q9H094
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for NBPF3

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000142794.17

RNA A-to-I editing events in Cancer.

CAediting_23731(21464808, +), CAediting_23732(21464809, +), CAediting_23733(21464934, +), CAediting_23734(21484249, +), CAediting_23735(21484250, +), CAediting_23736(21484251, +), CAediting_23737(21484252, +), CAediting_23738(21484310, +), CAediting_23739(21484314, +), CAediting_23740(21484320, +), CAediting_23741(21484321, +), CAediting_23742(21484326, +), CAediting_23743(21484328, +), CAediting_23744(21484330, +), CAediting_23745(21484368, +), CAediting_23746(21484384, +), CAediting_23747(21484386, +), CAediting_23748(21484391, +), CAediting_23749(21484396, +), CAediting_23750(21484409, +), CAediting_23751(21484417, +),

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RNA editing positional annotations for NBPF3 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_23731	chr1_21464808_+	intronic
CAediting_23732	chr1_21464809_+	intronic
CAediting_23733	chr1_21464934_+	intronic
CAediting_23734	chr1_21484249_+	UTR3
CAediting_23735	chr1_21484250_+	UTR3
CAediting_23736	chr1_21484251_+	UTR3
CAediting_23737	chr1_21484252_+	UTR3
CAediting_23738	chr1_21484310_+	UTR3
CAediting_23739	chr1_21484314_+	UTR3
CAediting_23740	chr1_21484320_+	UTR3
CAediting_23741	chr1_21484321_+	UTR3
CAediting_23742	chr1_21484326_+	UTR3
CAediting_23743	chr1_21484328_+	UTR3
CAediting_23744	chr1_21484330_+	UTR3
CAediting_23745	chr1_21484368_+	UTR3
CAediting_23746	chr1_21484384_+	UTR3
CAediting_23747	chr1_21484386_+	UTR3
CAediting_23748	chr1_21484391_+	UTR3
CAediting_23749	chr1_21484396_+	UTR3
CAediting_23750	chr1_21484409_+	UTR3
CAediting_23751	chr1_21484417_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_23731	chr1_21464808_+	SINE	Alu	AluJr
CAediting_23732	chr1_21464809_+	SINE	Alu	AluJr
CAediting_23733	chr1_21464934_+	SINE	Alu	AluJr
CAediting_23738	chr1_21484310_+	LINE	L1	L1MC4
CAediting_23739	chr1_21484314_+	LINE	L1	L1MC4
CAediting_23740	chr1_21484320_+	LINE	L1	L1MC4
CAediting_23741	chr1_21484321_+	LINE	L1	L1MC4
CAediting_23742	chr1_21484326_+	LINE	L1	L1MC4
CAediting_23743	chr1_21484328_+	LINE	L1	L1MC4
CAediting_23744	chr1_21484330_+	LINE	L1	L1MC4
CAediting_23745	chr1_21484368_+	LINE	L1	L1MC4
CAediting_23746	chr1_21484384_+	LINE	L1	L1MC4
CAediting_23747	chr1_21484386_+	LINE	L1	L1MC4
CAediting_23748	chr1_21484391_+	LINE	L1	L1MC4
CAediting_23749	chr1_21484396_+	LINE	L1	L1MC4
CAediting_23750	chr1_21484409_+	LINE	L1	L1MC4
CAediting_23751	chr1_21484417_+	LINE	L1	L1MC4

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RNA A-to-I editing events in the alternative splicing sites for NBPF3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000142794.17.NBPF3.

Correlation between RNA A-to-I editing and PSI for ENSG00000142794.17.NBPF3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NBPF3

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for NBPF3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for NBPF3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_23734	chr1_21484249_+	ENSG00000142794.17	ENST00000318249	hsa-miR-4652-3p	21484244	21484251	8mer-1a	21484230	21484251	140.00	-7.14
CAediting_23734	chr1_21484249_+	ENSG00000142794.17	ENST00000318220	hsa-miR-4652-3p	21484244	21484251	8mer-1a	21484230	21484251	140.00	-7.14
CAediting_23734	chr1_21484249_+	ENSG00000142794.17	ENST00000342104	hsa-miR-4652-3p	21484244	21484251	8mer-1a	21484230	21484251	140.00	-7.14
CAediting_23735	chr1_21484250_+	ENSG00000142794.17	ENST00000318249	hsa-miR-1248	21484247	21484254	8mer-1a	21484227	21484254	151.00	-17.13
CAediting_23735	chr1_21484250_+	ENSG00000142794.17	ENST00000318249	hsa-miR-578	21484245	21484251	7mer-m8	21484234	21484252	148.00	-13.78
CAediting_23735	chr1_21484250_+	ENSG00000142794.17	ENST00000318220	hsa-miR-1248	21484247	21484254	8mer-1a	21484227	21484254	151.00	-17.13
CAediting_23735	chr1_21484250_+	ENSG00000142794.17	ENST00000318220	hsa-miR-578	21484245	21484251	7mer-m8	21484234	21484252	148.00	-13.78
CAediting_23735	chr1_21484250_+	ENSG00000142794.17	ENST00000342104	hsa-miR-1248	21484247	21484254	8mer-1a	21484227	21484254	151.00	-17.13
CAediting_23735	chr1_21484250_+	ENSG00000142794.17	ENST00000342104	hsa-miR-578	21484245	21484251	7mer-m8	21484234	21484252	148.00	-13.78
CAediting_23736	chr1_21484251_+	ENSG00000142794.17	ENST00000318249	hsa-miR-6844	21484245	21484251	7mer-m8	21484231	21484252	160.00	-10.71
CAediting_23736	chr1_21484251_+	ENSG00000142794.17	ENST00000318249	hsa-miR-6881-3p	21484248	21484254	7mer-m8	21484235	21484255	146.00	-11.27
CAediting_23736	chr1_21484251_+	ENSG00000142794.17	ENST00000318220	hsa-miR-6844	21484245	21484251	7mer-m8	21484231	21484252	160.00	-10.71
CAediting_23736	chr1_21484251_+	ENSG00000142794.17	ENST00000318220	hsa-miR-6881-3p	21484248	21484254	7mer-m8	21484235	21484255	146.00	-11.27
CAediting_23736	chr1_21484251_+	ENSG00000142794.17	ENST00000342104	hsa-miR-6844	21484245	21484251	7mer-m8	21484231	21484252	160.00	-10.71
CAediting_23736	chr1_21484251_+	ENSG00000142794.17	ENST00000342104	hsa-miR-6881-3p	21484248	21484254	7mer-m8	21484235	21484255	146.00	-11.27
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000318249	hsa-miR-204-5p	21484248	21484254	7mer-m8	21484233	21484255	143.00	-11.65
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000318249	hsa-miR-211-5p	21484248	21484254	7mer-m8	21484233	21484255	141.00	-15.58
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000318249	hsa-miR-4287	21484249	21484255	7mer-m8	21484238	21484256	140.00	-14.13
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000318249	hsa-miR-4685-3p	21484249	21484255	7mer-m8	21484235	21484256	140.00	-15.33
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000318249	hsa-miR-6832-3p	21484247	21484254	8mer-1a	21484235	21484254	143.00	-8.39
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000318220	hsa-miR-204-5p	21484248	21484254	7mer-m8	21484233	21484255	143.00	-11.65
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000318220	hsa-miR-211-5p	21484248	21484254	7mer-m8	21484233	21484255	141.00	-15.58
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000318220	hsa-miR-4287	21484249	21484255	7mer-m8	21484238	21484256	140.00	-14.13
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000318220	hsa-miR-4685-3p	21484249	21484255	7mer-m8	21484235	21484256	140.00	-15.33
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000318220	hsa-miR-6832-3p	21484247	21484254	8mer-1a	21484235	21484254	143.00	-8.39
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000342104	hsa-miR-204-5p	21484248	21484254	7mer-m8	21484233	21484255	143.00	-11.65
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000342104	hsa-miR-211-5p	21484248	21484254	7mer-m8	21484233	21484255	141.00	-15.58
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000342104	hsa-miR-4287	21484249	21484255	7mer-m8	21484238	21484256	140.00	-14.13
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000342104	hsa-miR-4685-3p	21484249	21484255	7mer-m8	21484235	21484256	140.00	-15.33
CAediting_23737	chr1_21484252_+	ENSG00000142794.17	ENST00000342104	hsa-miR-6832-3p	21484247	21484254	8mer-1a	21484235	21484254	143.00	-8.39
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318249	hsa-miR-371b-5p	21484314	21484320	7mer-m8	21484299	21484321	143.00	-8.02
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318249	hsa-miR-373-5p	21484314	21484320	7mer-m8	21484300	21484321	147.00	-11.14
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318249	hsa-miR-4283	21484318	21484325	8mer-1a	21484309	21484325	146.00	-19.88
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318249	hsa-miR-4283	21484318	21484325	8mer-1a	21484309	21484325	146.00	-19.88
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318249	hsa-miR-4437	21484317	21484323	7mer-m8	21484303	21484324	162.00	-21.38
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318249	hsa-miR-616-5p	21484314	21484320	7mer-m8	21484300	21484321	143.00	-8.54
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318220	hsa-miR-371b-5p	21484314	21484320	7mer-m8	21484299	21484321	143.00	-8.02
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318220	hsa-miR-373-5p	21484314	21484320	7mer-m8	21484300	21484321	147.00	-11.14
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318220	hsa-miR-4283	21484318	21484325	8mer-1a	21484309	21484325	146.00	-19.88
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318220	hsa-miR-4283	21484318	21484325	8mer-1a	21484309	21484325	146.00	-19.88
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318220	hsa-miR-4437	21484317	21484323	7mer-m8	21484303	21484324	162.00	-21.38
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318220	hsa-miR-616-5p	21484314	21484320	7mer-m8	21484300	21484321	143.00	-8.54
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000342104	hsa-miR-371b-5p	21484314	21484320	7mer-m8	21484299	21484321	143.00	-8.02
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000342104	hsa-miR-373-5p	21484314	21484320	7mer-m8	21484300	21484321	147.00	-11.14
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000342104	hsa-miR-4283	21484318	21484325	8mer-1a	21484309	21484325	146.00	-19.88
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000342104	hsa-miR-4283	21484318	21484325	8mer-1a	21484309	21484325	146.00	-19.88
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000342104	hsa-miR-4437	21484317	21484323	7mer-m8	21484303	21484324	162.00	-21.38
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000342104	hsa-miR-616-5p	21484314	21484320	7mer-m8	21484300	21484321	143.00	-8.54
CAediting_23745	chr1_21484368_+	ENSG00000142794.17	ENST00000318249	hsa-miR-4715-3p	21484363	21484369	7mer-m8	21484348	21484370	149.00	-16.90
CAediting_23745	chr1_21484368_+	ENSG00000142794.17	ENST00000318249	hsa-miR-6872-3p	21484366	21484373	8mer-1a	21484353	21484373	147.00	-18.80
CAediting_23745	chr1_21484368_+	ENSG00000142794.17	ENST00000318220	hsa-miR-4715-3p	21484363	21484369	7mer-m8	21484348	21484370	149.00	-16.90
CAediting_23745	chr1_21484368_+	ENSG00000142794.17	ENST00000318220	hsa-miR-6872-3p	21484366	21484373	8mer-1a	21484353	21484373	147.00	-18.80
CAediting_23745	chr1_21484368_+	ENSG00000142794.17	ENST00000342104	hsa-miR-4715-3p	21484363	21484369	7mer-m8	21484348	21484370	149.00	-16.90
CAediting_23745	chr1_21484368_+	ENSG00000142794.17	ENST00000342104	hsa-miR-6872-3p	21484366	21484373	8mer-1a	21484353	21484373	147.00	-18.80
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318249	hsa-miR-4691-5p	21484382	21484388	7mer-m8	21484368	21484389	143.00	-20.04
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318249	hsa-miR-6792-3p	21484382	21484388	7mer-m8	21484368	21484389	153.00	-20.36
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318220	hsa-miR-4691-5p	21484382	21484388	7mer-m8	21484368	21484389	143.00	-20.04
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318220	hsa-miR-6792-3p	21484382	21484388	7mer-m8	21484368	21484389	153.00	-20.36
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000342104	hsa-miR-4691-5p	21484382	21484388	7mer-m8	21484368	21484389	143.00	-20.04
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000342104	hsa-miR-6792-3p	21484382	21484388	7mer-m8	21484368	21484389	153.00	-20.36
CAediting_23748	chr1_21484391_+	ENSG00000142794.17	ENST00000318249	hsa-miR-1247-5p	21484386	21484392	7mer-m8	21484372	21484393	142.00	-19.84
CAediting_23748	chr1_21484391_+	ENSG00000142794.17	ENST00000318220	hsa-miR-1247-5p	21484386	21484392	7mer-m8	21484372	21484393	142.00	-19.84
CAediting_23748	chr1_21484391_+	ENSG00000142794.17	ENST00000342104	hsa-miR-1247-5p	21484386	21484392	7mer-m8	21484372	21484393	142.00	-19.84
CAediting_23750	chr1_21484409_+	ENSG00000142794.17	ENST00000318249	hsa-miR-181a-3p	21484406	21484412	7mer-m8	21484393	21484413	145.00	-19.96
CAediting_23750	chr1_21484409_+	ENSG00000142794.17	ENST00000318249	hsa-miR-181c-3p	21484407	21484413	7mer-m8	21484392	21484414	151.00	-21.59
CAediting_23750	chr1_21484409_+	ENSG00000142794.17	ENST00000318220	hsa-miR-181a-3p	21484406	21484412	7mer-m8	21484393	21484413	145.00	-19.96
CAediting_23750	chr1_21484409_+	ENSG00000142794.17	ENST00000318220	hsa-miR-181c-3p	21484407	21484413	7mer-m8	21484392	21484414	151.00	-21.59
CAediting_23750	chr1_21484409_+	ENSG00000142794.17	ENST00000342104	hsa-miR-181a-3p	21484406	21484412	7mer-m8	21484393	21484413	145.00	-19.96
CAediting_23750	chr1_21484409_+	ENSG00000142794.17	ENST00000342104	hsa-miR-181c-3p	21484407	21484413	7mer-m8	21484392	21484414	151.00	-21.59
CAediting_23740	chr1_21484320_+	ENSG00000142794.17	ENST00000318249	hsa-miR-615-5p	21484318	21484325	8mer-1a	21484304	21484325	144.00	-19.42
CAediting_23740	chr1_21484320_+	ENSG00000142794.17	ENST00000318220	hsa-miR-615-5p	21484318	21484325	8mer-1a	21484304	21484325	144.00	-19.42
CAediting_23740	chr1_21484320_+	ENSG00000142794.17	ENST00000342104	hsa-miR-615-5p	21484318	21484325	8mer-1a	21484304	21484325	144.00	-19.42
CAediting_23743	chr1_21484328_+	ENSG00000142794.17	ENST00000318249	hsa-miR-12126	21484322	21484329	8mer-1a	21484306	21484329	155.00	-17.45
CAediting_23743	chr1_21484328_+	ENSG00000142794.17	ENST00000318220	hsa-miR-12126	21484322	21484329	8mer-1a	21484306	21484329	155.00	-17.45
CAediting_23743	chr1_21484328_+	ENSG00000142794.17	ENST00000342104	hsa-miR-12126	21484322	21484329	8mer-1a	21484306	21484329	155.00	-17.45
CAediting_23744	chr1_21484330_+	ENSG00000142794.17	ENST00000318249	hsa-miR-147b-5p	21484328	21484334	7mer-m8	21484313	21484335	159.00	-13.41
CAediting_23744	chr1_21484330_+	ENSG00000142794.17	ENST00000318249	hsa-miR-4261	21484328	21484334	7mer-m8	21484320	21484335	140.00	-14.87
CAediting_23744	chr1_21484330_+	ENSG00000142794.17	ENST00000318249	hsa-miR-494-3p	21484327	21484333	7mer-m8	21484313	21484334	140.00	-11.28
CAediting_23744	chr1_21484330_+	ENSG00000142794.17	ENST00000318220	hsa-miR-147b-5p	21484328	21484334	7mer-m8	21484313	21484335	159.00	-13.41
CAediting_23744	chr1_21484330_+	ENSG00000142794.17	ENST00000318220	hsa-miR-4261	21484328	21484334	7mer-m8	21484320	21484335	140.00	-14.87
CAediting_23744	chr1_21484330_+	ENSG00000142794.17	ENST00000318220	hsa-miR-494-3p	21484327	21484333	7mer-m8	21484313	21484334	140.00	-11.28
CAediting_23744	chr1_21484330_+	ENSG00000142794.17	ENST00000342104	hsa-miR-147b-5p	21484328	21484334	7mer-m8	21484313	21484335	159.00	-13.41
CAediting_23744	chr1_21484330_+	ENSG00000142794.17	ENST00000342104	hsa-miR-4261	21484328	21484334	7mer-m8	21484320	21484335	140.00	-14.87
CAediting_23744	chr1_21484330_+	ENSG00000142794.17	ENST00000342104	hsa-miR-494-3p	21484327	21484333	7mer-m8	21484313	21484334	140.00	-11.28
CAediting_23751	chr1_21484417_+	ENSG00000142794.17	ENST00000318249	hsa-miR-1273h-3p	21484412	21484418	7mer-m8	21484395	21484419	146.00	-21.03
CAediting_23751	chr1_21484417_+	ENSG00000142794.17	ENST00000318220	hsa-miR-1273h-3p	21484412	21484418	7mer-m8	21484395	21484419	146.00	-21.03
CAediting_23751	chr1_21484417_+	ENSG00000142794.17	ENST00000342104	hsa-miR-1273h-3p	21484412	21484418	7mer-m8	21484395	21484419	146.00	-21.03

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318249	hsa-miR-1283	21484378	21484385	8mer-1a	21484364	21484385	143	-11.24
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318249	hsa-miR-1283	21484378	21484385	8mer-1a	21484364	21484385	143	-11.24
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318249	hsa-miR-3170	21484319	21484326	8mer-1a	21484306	21484326	151	-15.79
CAediting_23742	chr1_21484326_+	ENSG00000142794.17	ENST00000318249	hsa-miR-3170	21484319	21484326	8mer-1a	21484306	21484326	151	-15.79
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000318249	hsa-miR-3909	21484383	21484390	8mer-1a	21484369	21484390	146	-21.3
CAediting_23739	chr1_21484314_+	ENSG00000142794.17	ENST00000318249	hsa-miR-4698	21484313	21484319	7mer-1a	21484295	21484319	143	-13.26
CAediting_23738	chr1_21484310_+	ENSG00000142794.17	ENST00000318249	hsa-miR-4744	21484304	21484310	7mer-m8	21484287	21484311	146	-11.66
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318249	hsa-miR-519a-2-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000318249	hsa-miR-519a-2-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318249	hsa-miR-520b-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000318249	hsa-miR-520b-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23742	chr1_21484326_+	ENSG00000142794.17	ENST00000318249	hsa-miR-5572	21484320	21484327	8mer-1a	21484307	21484327	150	-19.29
CAediting_23748	chr1_21484391_+	ENSG00000142794.17	ENST00000318249	hsa-miR-6748-3p	21484386	21484392	7mer-m8	21484372	21484393	143	-19.14
CAediting_23750	chr1_21484409_+	ENSG00000142794.17	ENST00000318249	hsa-miR-6807-5p	21484402	21484409	8mer-1a	21484388	21484409	145	-18.35
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000318249	hsa-miR-6852-3p	21484383	21484390	8mer-1a	21484374	21484390	142	-16.51
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318249	hsa-miR-6855-5p	21484319	21484326	8mer-1a	21484298	21484326	152	-19.35
CAediting_23742	chr1_21484326_+	ENSG00000142794.17	ENST00000318249	hsa-miR-6855-5p	21484319	21484326	8mer-1a	21484298	21484326	152	-19.35
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318220	hsa-miR-1283	21484378	21484385	8mer-1a	21484364	21484385	143	-11.24
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318220	hsa-miR-1283	21484378	21484385	8mer-1a	21484364	21484385	143	-11.24
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318220	hsa-miR-3170	21484319	21484326	8mer-1a	21484306	21484326	151	-15.79
CAediting_23742	chr1_21484326_+	ENSG00000142794.17	ENST00000318220	hsa-miR-3170	21484319	21484326	8mer-1a	21484306	21484326	151	-15.79
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000318220	hsa-miR-3909	21484383	21484390	8mer-1a	21484369	21484390	146	-21.3
CAediting_23739	chr1_21484314_+	ENSG00000142794.17	ENST00000318220	hsa-miR-4698	21484313	21484319	7mer-1a	21484295	21484319	143	-13.26
CAediting_23738	chr1_21484310_+	ENSG00000142794.17	ENST00000318220	hsa-miR-4744	21484304	21484310	7mer-m8	21484287	21484311	146	-11.66
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318220	hsa-miR-519a-2-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000318220	hsa-miR-519a-2-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000318220	hsa-miR-520b-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000318220	hsa-miR-520b-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23742	chr1_21484326_+	ENSG00000142794.17	ENST00000318220	hsa-miR-5572	21484320	21484327	8mer-1a	21484307	21484327	150	-19.29
CAediting_23748	chr1_21484391_+	ENSG00000142794.17	ENST00000318220	hsa-miR-6748-3p	21484386	21484392	7mer-m8	21484372	21484393	143	-19.14
CAediting_23750	chr1_21484409_+	ENSG00000142794.17	ENST00000318220	hsa-miR-6807-5p	21484402	21484409	8mer-1a	21484388	21484409	145	-18.35
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000318220	hsa-miR-6852-3p	21484383	21484390	8mer-1a	21484374	21484390	142	-16.51
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000318220	hsa-miR-6855-5p	21484319	21484326	8mer-1a	21484298	21484326	152	-19.35
CAediting_23742	chr1_21484326_+	ENSG00000142794.17	ENST00000318220	hsa-miR-6855-5p	21484319	21484326	8mer-1a	21484298	21484326	152	-19.35
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000342104	hsa-miR-1283	21484378	21484385	8mer-1a	21484364	21484385	143	-11.24
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000342104	hsa-miR-1283	21484378	21484385	8mer-1a	21484364	21484385	143	-11.24
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000342104	hsa-miR-3170	21484319	21484326	8mer-1a	21484306	21484326	151	-15.79
CAediting_23742	chr1_21484326_+	ENSG00000142794.17	ENST00000342104	hsa-miR-3170	21484319	21484326	8mer-1a	21484306	21484326	151	-15.79
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000342104	hsa-miR-3909	21484383	21484390	8mer-1a	21484369	21484390	146	-21.3
CAediting_23739	chr1_21484314_+	ENSG00000142794.17	ENST00000342104	hsa-miR-4698	21484313	21484319	7mer-1a	21484295	21484319	143	-13.26
CAediting_23738	chr1_21484310_+	ENSG00000142794.17	ENST00000342104	hsa-miR-4744	21484304	21484310	7mer-m8	21484287	21484311	146	-11.66
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000342104	hsa-miR-519a-2-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000342104	hsa-miR-519a-2-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23746	chr1_21484384_+	ENSG00000142794.17	ENST00000342104	hsa-miR-520b-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000342104	hsa-miR-520b-5p	21484380	21484386	7mer-m8	21484367	21484387	155	-21.52
CAediting_23742	chr1_21484326_+	ENSG00000142794.17	ENST00000342104	hsa-miR-5572	21484320	21484327	8mer-1a	21484307	21484327	150	-19.29
CAediting_23748	chr1_21484391_+	ENSG00000142794.17	ENST00000342104	hsa-miR-6748-3p	21484386	21484392	7mer-m8	21484372	21484393	143	-19.14
CAediting_23750	chr1_21484409_+	ENSG00000142794.17	ENST00000342104	hsa-miR-6807-5p	21484402	21484409	8mer-1a	21484388	21484409	145	-18.35
CAediting_23747	chr1_21484386_+	ENSG00000142794.17	ENST00000342104	hsa-miR-6852-3p	21484383	21484390	8mer-1a	21484374	21484390	142	-16.51
CAediting_23741	chr1_21484321_+	ENSG00000142794.17	ENST00000342104	hsa-miR-6855-5p	21484319	21484326	8mer-1a	21484298	21484326	152	-19.35
CAediting_23742	chr1_21484326_+	ENSG00000142794.17	ENST00000342104	hsa-miR-6855-5p	21484319	21484326	8mer-1a	21484298	21484326	152	-19.35

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000142794.17	ENST00000318249	hsa-miR-200b-3p	21484550	21484557	8mer-1a	21484536	21484557	148	-13.43
CAediting_393	chr1_1167164_+	ENSG00000142794.17	ENST00000318249	hsa-miR-200b-3p	21483991	21483997	7mer-m8	21483977	21483998	144	-13.43
CAediting_393	chr1_1167164_+	ENSG00000142794.17	ENST00000318220	hsa-miR-200b-3p	21484550	21484557	8mer-1a	21484536	21484557	148	-13.43
CAediting_393	chr1_1167164_+	ENSG00000142794.17	ENST00000318220	hsa-miR-200b-3p	21483991	21483997	7mer-m8	21483977	21483998	144	-13.43
CAediting_393	chr1_1167164_+	ENSG00000142794.17	ENST00000342104	hsa-miR-200b-3p	21484550	21484557	8mer-1a	21484536	21484557	148	-13.43
CAediting_393	chr1_1167164_+	ENSG00000142794.17	ENST00000342104	hsa-miR-200b-3p	21483991	21483997	7mer-m8	21483977	21483998	144	-13.43
CAediting_1229413	chr17_67471544_+	ENSG00000142794.17	ENST00000318249	hsa-miR-548aa	21483767	21483774	8mer-1a	21483748	21483774	157	-16.24
CAediting_1351755	chr19_40282625_-	ENSG00000142794.17	ENST00000318249	hsa-miR-641	21483695	21483701	7mer-m8	21483676	21483702	141	-18.9
CAediting_396018	chr5_1062918_-	ENSG00000142794.17	ENST00000318220	hsa-miR-4635	21467019	21467025	7mer-m8	21467006	21467026	157	-19.39
CAediting_1160181	chr17_7017644_-	ENSG00000142794.17	ENST00000318220	hsa-miR-195-3p	21468522	21468528	7mer-m8	21468508	21468529	157	-16.49
CAediting_1229415	chr17_67471547_+	ENSG00000142794.17	ENST00000318220	hsa-miR-548aa	21481746	21481752	7mer-m8	21481730	21481753	149	-13.96
CAediting_1229413	chr17_67471544_+	ENSG00000142794.17	ENST00000318220	hsa-miR-548aa	21483767	21483774	8mer-1a	21483748	21483774	157	-16.24
CAediting_1351755	chr19_40282625_-	ENSG00000142794.17	ENST00000318220	hsa-miR-641	21483695	21483701	7mer-m8	21483676	21483702	141	-18.9
CAediting_1229413	chr17_67471544_+	ENSG00000142794.17	ENST00000342104	hsa-miR-548aa	21483767	21483774	8mer-1a	21483748	21483774	157	-16.24
CAediting_1351755	chr19_40282625_-	ENSG00000142794.17	ENST00000342104	hsa-miR-641	21483695	21483701	7mer-m8	21483676	21483702	141	-18.9
CAediting_1160181	chr17_7017644_-	ENSG00000142794.17	ENST00000486229	hsa-miR-195-3p	21468522	21468528	7mer-m8	21468508	21468529	157	-16.49
CAediting_1160181	chr17_7017644_-	ENSG00000142794.17	ENST00000434838	hsa-miR-195-3p	21468522	21468528	7mer-m8	21468508	21468529	157	-16.49
CAediting_1229415	chr17_67471547_+	ENSG00000142794.17	ENST00000434838	hsa-miR-548aa	21481746	21481752	7mer-m8	21481730	21481753	149	-13.96
CAediting_468389	chr6_31355314_-	ENSG00000142794.17	ENST00000318220	hsa-miR-6891-5p	21471676	21471683	8mer-1a	21471665	21471683	149	-25.3
CAediting_468389	chr6_31355314_-	ENSG00000142794.17	ENST00000434838	hsa-miR-6891-5p	21471676	21471683	8mer-1a	21471665	21471683	149	-25.3

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229413	chr17_67471544_+	ENSG00000142794.17	ENST00000318249	hsa-miR-548aa	21484652	21484658	7mer-m8	21484629	21484659	153	-13.16
CAediting_1351755	chr19_40282625_-	ENSG00000142794.17	ENST00000318249	hsa-miR-641	21484437	21484443	7mer-m8	21484418	21484444	147	-15.43
CAediting_1229413	chr17_67471544_+	ENSG00000142794.17	ENST00000318220	hsa-miR-548aa	21484652	21484658	7mer-m8	21484629	21484659	153	-13.16
CAediting_1229413	chr17_67471544_+	ENSG00000142794.17	ENST00000318220	hsa-miR-548aa	21484957	21484963	7mer-m8	21484942	21484964	151	-6.51
CAediting_1351755	chr19_40282625_-	ENSG00000142794.17	ENST00000318220	hsa-miR-641	21484437	21484443	7mer-m8	21484418	21484444	147	-15.43
CAediting_1229413	chr17_67471544_+	ENSG00000142794.17	ENST00000342104	hsa-miR-548aa	21484652	21484658	7mer-m8	21484629	21484659	153	-13.16
CAediting_1351755	chr19_40282625_-	ENSG00000142794.17	ENST00000342104	hsa-miR-641	21484437	21484443	7mer-m8	21484418	21484444	147	-15.43

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for NBPF3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000318220.9	nonsense_mediated_decay
ENST00000318249.8	protein_coding
ENST00000342104.8	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_23734	ENST00000318220.9	chr1_21484249_+	-1489.30	-1489.20	-1493.90
CAediting_23735	ENST00000318220.9	chr1_21484250_+	-1489.30	-1489.20	-1493.90
CAediting_23736	ENST00000318220.9	chr1_21484251_+	-1489.30	-1489.20	-1493.90
CAediting_23737	ENST00000318220.9	chr1_21484252_+	-1488.90	-1489.20	-1493.90
CAediting_23738	ENST00000318220.9	chr1_21484310_+	-1488.90	-1489.20	-1493.90
CAediting_23739	ENST00000318220.9	chr1_21484314_+	-1491.80	-1489.20	-1493.90
CAediting_23740	ENST00000318220.9	chr1_21484320_+	-1488.70	-1489.20	-1493.90
CAediting_23741	ENST00000318220.9	chr1_21484321_+	-1489.20	-1489.20	-1493.90
CAediting_23742	ENST00000318220.9	chr1_21484326_+	-1489.60	-1489.20	-1493.90
CAediting_23743	ENST00000318220.9	chr1_21484328_+	-1489.20	-1489.20	-1493.90
CAediting_23744	ENST00000318220.9	chr1_21484330_+	-1489.20	-1489.20	-1493.90
CAediting_23745	ENST00000318220.9	chr1_21484368_+	-1488.60	-1489.20	-1493.90
CAediting_23746	ENST00000318220.9	chr1_21484384_+	-1490.90	-1489.20	-1493.90
CAediting_23747	ENST00000318220.9	chr1_21484386_+	-1495.20	-1489.20	-1493.90
CAediting_23748	ENST00000318220.9	chr1_21484391_+	-1488.50	-1489.20	-1493.90
CAediting_23749	ENST00000318220.9	chr1_21484396_+	-1488.50	-1489.20	-1493.90
CAediting_23750	ENST00000318220.9	chr1_21484409_+	-1488.50	-1489.20	-1493.90
CAediting_23751	ENST00000318220.9	chr1_21484417_+	-1489.20	-1489.20	-1493.90
CAediting_23734	ENST00000318249.8	chr1_21484249_+	-1197.60	-1197.50	-1202.20
CAediting_23735	ENST00000318249.8	chr1_21484250_+	-1197.60	-1197.50	-1202.20
CAediting_23736	ENST00000318249.8	chr1_21484251_+	-1197.60	-1197.50	-1202.20
CAediting_23737	ENST00000318249.8	chr1_21484252_+	-1197.20	-1197.50	-1202.20
CAediting_23738	ENST00000318249.8	chr1_21484310_+	-1197.20	-1197.50	-1202.20
CAediting_23739	ENST00000318249.8	chr1_21484314_+	-1200.10	-1197.50	-1202.20
CAediting_23740	ENST00000318249.8	chr1_21484320_+	-1197.00	-1197.50	-1202.20
CAediting_23741	ENST00000318249.8	chr1_21484321_+	-1197.50	-1197.50	-1202.20
CAediting_23742	ENST00000318249.8	chr1_21484326_+	-1197.90	-1197.50	-1202.20
CAediting_23743	ENST00000318249.8	chr1_21484328_+	-1197.50	-1197.50	-1202.20
CAediting_23744	ENST00000318249.8	chr1_21484330_+	-1197.50	-1197.50	-1202.20
CAediting_23745	ENST00000318249.8	chr1_21484368_+	-1196.90	-1197.50	-1202.20
CAediting_23746	ENST00000318249.8	chr1_21484384_+	-1199.20	-1197.50	-1202.20
CAediting_23747	ENST00000318249.8	chr1_21484386_+	-1203.50	-1197.50	-1202.20
CAediting_23748	ENST00000318249.8	chr1_21484391_+	-1196.80	-1197.50	-1202.20
CAediting_23749	ENST00000318249.8	chr1_21484396_+	-1196.80	-1197.50	-1202.20
CAediting_23750	ENST00000318249.8	chr1_21484409_+	-1196.80	-1197.50	-1202.20
CAediting_23751	ENST00000318249.8	chr1_21484417_+	-1197.50	-1197.50	-1202.20
CAediting_23734	ENST00000342104.8	chr1_21484249_+	-1270.10	-1270.00	-1274.70
CAediting_23735	ENST00000342104.8	chr1_21484250_+	-1270.10	-1270.00	-1274.70
CAediting_23736	ENST00000342104.8	chr1_21484251_+	-1270.10	-1270.00	-1274.70
CAediting_23737	ENST00000342104.8	chr1_21484252_+	-1269.70	-1270.00	-1274.70
CAediting_23738	ENST00000342104.8	chr1_21484310_+	-1269.70	-1270.00	-1274.70
CAediting_23739	ENST00000342104.8	chr1_21484314_+	-1272.60	-1270.00	-1274.70
CAediting_23740	ENST00000342104.8	chr1_21484320_+	-1269.50	-1270.00	-1274.70
CAediting_23741	ENST00000342104.8	chr1_21484321_+	-1270.00	-1270.00	-1274.70
CAediting_23742	ENST00000342104.8	chr1_21484326_+	-1270.40	-1270.00	-1274.70
CAediting_23743	ENST00000342104.8	chr1_21484328_+	-1270.00	-1270.00	-1274.70
CAediting_23744	ENST00000342104.8	chr1_21484330_+	-1270.00	-1270.00	-1274.70
CAediting_23745	ENST00000342104.8	chr1_21484368_+	-1269.40	-1270.00	-1274.70
CAediting_23746	ENST00000342104.8	chr1_21484384_+	-1271.70	-1270.00	-1274.70
CAediting_23747	ENST00000342104.8	chr1_21484386_+	-1276.00	-1270.00	-1274.70
CAediting_23748	ENST00000342104.8	chr1_21484391_+	-1269.30	-1270.00	-1274.70
CAediting_23749	ENST00000342104.8	chr1_21484396_+	-1269.30	-1270.00	-1274.70
CAediting_23750	ENST00000342104.8	chr1_21484409_+	-1269.30	-1270.00	-1274.70
CAediting_23751	ENST00000342104.8	chr1_21484417_+	-1270.00	-1270.00	-1274.70

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Relation with ADAR for NBPF3

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_23734	chr1_21484249_+	0.0050953462801511	0.294449535829301	.	.	.	.
BRCA	CAediting_23737	chr1_21484252_+	2.19460899379446e-07	0.374693012433778	.	.	.	.
BRCA	CAediting_23738	chr1_21484310_+	0.000711379645243284	0.337921702643572	.	.	.	.
BRCA	CAediting_23741	chr1_21484321_+	6.03598124929905e-09	0.376309259648352	.	.	.	.
OV	CAediting_23741	chr1_21484321_+	0.00533538025457097	0.194393088168019	.	.	.	.
BRCA	CAediting_23746	chr1_21484384_+	3.57812479371261e-08	0.312498258385947	.	.	.	.
STAD	CAediting_23746	chr1_21484384_+	.	.	8.95515785030899e-05	0.392918462127499	.	.
KIRC	CAediting_23746	chr1_21484384_+	.	.	0.0103188888677292	0.273678964023822	.	.
ESCA	CAediting_23746	chr1_21484384_+	0.0225761926566684	0.247166700224367	0.0418483143226306	0.221261697070939	.	.
OV	CAediting_23746	chr1_21484384_+	1.22509517134133e-05	0.322175646049043	.	.	.	.
PCPG	CAediting_23746	chr1_21484384_+	.	.	0.00422168180859105	0.390378118995135	.	.
BRCA	CAediting_23750	chr1_21484409_+	0.00023223520805285	0.239951932119887	.	.	.	.

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Relation with cancer stages for NBPF3

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for NBPF3

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
BRCA	CAediting_23734	chr1_21484249_+	0.000960734880689262	0.0110022	285388000

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RelatedDrugs for NBPF3

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for NBPF3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene