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Editing gene: SNHG3 (CAeditome ID:8420)

Gene summary for SNHG3

Gene summary

Gene information	Gene symbol	SNHG3
	Gene ID	8420
	Gene name	small nucleolar RNA host gene 3
	Synonyms	NCRNA00014\|RNU17C\|RNU17D\|U17HG\|U17HG-A\|U17HG-AB
	Cytomap	1p35.3
	Type of gene	ncRNA
	Description	U17 small nucleolar RNA hostsmall nucleolar RNA host gene (non-protein coding) 3small nucleolar RNA host gene 3 (non-protein coding)
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for SNHG3

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000242125.3

RNA A-to-I editing events in Cancer.

CAediting_33752(28506302, +), CAediting_33753(28506330, +), CAediting_33754(28506340, +), CAediting_33755(28506831, +), CAediting_33756(28506841, +), CAediting_33757(28506851, +), CAediting_33758(28506885, +), CAediting_33759(28506931, +), CAediting_33760(28507053, +), CAediting_33761(28507711, +), CAediting_33762(28507733, +), CAediting_33763(28507746, +), CAediting_33764(28507748, +), CAediting_33765(28507759, +), CAediting_33766(28507790, +), CAediting_33767(28507804, +), CAediting_33768(28507827, +), CAediting_33769(28507867, +), CAediting_33770(28507868, +), CAediting_33771(28507869, +), CAediting_33772(28507880, +), CAediting_33773(28507882, +), CAediting_33774(28507889, +), CAediting_33775(28509017, +), CAediting_33776(28509037, +), CAediting_33777(28509038, +), CAediting_33778(28509077, +), CAediting_33779(28509341, +), CAediting_33780(28509346, +), CAediting_33781(28509368, +), CAediting_33782(28509371, +), CAediting_33783(28509381, +), CAediting_33784(28509383, +), CAediting_33785(28509391, +), CAediting_33786(28509394, +), CAediting_33787(28509397, +), CAediting_33788(28509399, +), CAediting_33789(28509407, +), CAediting_33790(28509416, +), CAediting_33791(28509425, +), CAediting_33792(28509427, +), CAediting_33793(28509432, +), CAediting_33794(28509444, +), CAediting_33795(28509491, +), CAediting_33796(28509501, +), CAediting_33797(28509513, +), CAediting_33798(28510319, +), CAediting_33799(28510360, +), CAediting_33800(28510374, +), CAediting_33801(28510376, +), CAediting_33802(28510382, +), CAediting_33803(28510383, +), CAediting_33804(28510391, +), CAediting_33805(28510416, +), CAediting_33806(28510423, +), CAediting_33807(28510436, +), CAediting_33808(28510437, +), CAediting_33809(28510446, +), CAediting_33810(28510447, +), CAediting_33811(28510461, +), CAediting_33812(28510462, +), CAediting_33813(28510463, +), CAediting_33814(28510464, +), CAediting_33815(28510465, +), CAediting_33816(28510469, +), CAediting_33817(28510470, +), CAediting_33818(28510471, +), CAediting_33819(28510474, +), CAediting_33820(28510494, +), CAediting_33821(28510509, +), CAediting_33822(28510516, +), CAediting_33823(28510525, +), CAediting_33824(28510603, +),

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RNA editing positional annotations for SNHG3 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_33752	chr1_28506302_+	ncRNA_intronic
CAediting_33753	chr1_28506330_+	ncRNA_intronic
CAediting_33754	chr1_28506340_+	ncRNA_intronic
CAediting_33755	chr1_28506831_+	ncRNA_exonic
CAediting_33756	chr1_28506841_+	ncRNA_exonic
CAediting_33757	chr1_28506851_+	ncRNA_exonic
CAediting_33758	chr1_28506885_+	ncRNA_exonic
CAediting_33759	chr1_28506931_+	ncRNA_exonic
CAediting_33760	chr1_28507053_+	ncRNA_exonic
CAediting_33761	chr1_28507711_+	ncRNA_exonic
CAediting_33762	chr1_28507733_+	ncRNA_exonic
CAediting_33763	chr1_28507746_+	ncRNA_exonic
CAediting_33764	chr1_28507748_+	ncRNA_exonic
CAediting_33765	chr1_28507759_+	ncRNA_exonic
CAediting_33766	chr1_28507790_+	ncRNA_exonic
CAediting_33767	chr1_28507804_+	ncRNA_exonic
CAediting_33768	chr1_28507827_+	ncRNA_exonic
CAediting_33769	chr1_28507867_+	ncRNA_exonic
CAediting_33770	chr1_28507868_+	ncRNA_exonic
CAediting_33771	chr1_28507869_+	ncRNA_exonic
CAediting_33772	chr1_28507880_+	ncRNA_exonic
CAediting_33773	chr1_28507882_+	ncRNA_exonic
CAediting_33774	chr1_28507889_+	ncRNA_exonic
CAediting_33775	chr1_28509017_+	ncRNA_exonic
CAediting_33776	chr1_28509037_+	ncRNA_exonic
CAediting_33777	chr1_28509038_+	ncRNA_exonic
CAediting_33778	chr1_28509077_+	ncRNA_exonic
CAediting_33779	chr1_28509341_+	ncRNA_exonic
CAediting_33780	chr1_28509346_+	ncRNA_exonic
CAediting_33781	chr1_28509368_+	ncRNA_exonic
CAediting_33782	chr1_28509371_+	ncRNA_exonic
CAediting_33783	chr1_28509381_+	ncRNA_exonic
CAediting_33784	chr1_28509383_+	ncRNA_exonic
CAediting_33785	chr1_28509391_+	ncRNA_exonic
CAediting_33786	chr1_28509394_+	ncRNA_exonic
CAediting_33787	chr1_28509397_+	ncRNA_exonic
CAediting_33788	chr1_28509399_+	ncRNA_exonic
CAediting_33789	chr1_28509407_+	ncRNA_exonic
CAediting_33790	chr1_28509416_+	ncRNA_exonic
CAediting_33791	chr1_28509425_+	ncRNA_exonic
CAediting_33792	chr1_28509427_+	ncRNA_exonic
CAediting_33793	chr1_28509432_+	ncRNA_exonic
CAediting_33794	chr1_28509444_+	ncRNA_exonic
CAediting_33795	chr1_28509491_+	ncRNA_exonic
CAediting_33796	chr1_28509501_+	ncRNA_exonic
CAediting_33797	chr1_28509513_+	ncRNA_exonic
CAediting_33798	chr1_28510319_+	ncRNA_exonic
CAediting_33799	chr1_28510360_+	ncRNA_exonic
CAediting_33800	chr1_28510374_+	ncRNA_exonic
CAediting_33801	chr1_28510376_+	ncRNA_exonic
CAediting_33802	chr1_28510382_+	ncRNA_exonic
CAediting_33803	chr1_28510383_+	ncRNA_exonic
CAediting_33804	chr1_28510391_+	ncRNA_exonic
CAediting_33805	chr1_28510416_+	ncRNA_exonic
CAediting_33806	chr1_28510423_+	ncRNA_exonic
CAediting_33807	chr1_28510436_+	ncRNA_exonic
CAediting_33808	chr1_28510437_+	ncRNA_exonic
CAediting_33809	chr1_28510446_+	ncRNA_exonic
CAediting_33810	chr1_28510447_+	ncRNA_exonic
CAediting_33811	chr1_28510461_+	ncRNA_exonic
CAediting_33812	chr1_28510462_+	ncRNA_exonic
CAediting_33813	chr1_28510463_+	ncRNA_exonic
CAediting_33814	chr1_28510464_+	ncRNA_exonic
CAediting_33815	chr1_28510465_+	ncRNA_exonic
CAediting_33816	chr1_28510469_+	ncRNA_exonic
CAediting_33817	chr1_28510470_+	ncRNA_exonic
CAediting_33818	chr1_28510471_+	ncRNA_exonic
CAediting_33819	chr1_28510474_+	ncRNA_exonic
CAediting_33820	chr1_28510494_+	ncRNA_exonic
CAediting_33821	chr1_28510509_+	ncRNA_exonic
CAediting_33822	chr1_28510516_+	ncRNA_exonic
CAediting_33823	chr1_28510525_+	ncRNA_exonic
CAediting_33824	chr1_28510603_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_33752	chr1_28506302_+	SINE	Alu	AluSx
CAediting_33753	chr1_28506330_+	SINE	Alu	AluSx
CAediting_33754	chr1_28506340_+	SINE	Alu	AluSx
CAediting_33755	chr1_28506831_+	SINE	Alu	AluSg
CAediting_33756	chr1_28506841_+	SINE	Alu	AluSg
CAediting_33757	chr1_28506851_+	SINE	Alu	AluSg
CAediting_33758	chr1_28506885_+	SINE	Alu	AluSg
CAediting_33759	chr1_28506931_+	SINE	Alu	AluSg
CAediting_33760	chr1_28507053_+	SINE	Alu	Alu
CAediting_33761	chr1_28507711_+	SINE	Alu	AluSg
CAediting_33762	chr1_28507733_+	SINE	Alu	AluSg
CAediting_33763	chr1_28507746_+	SINE	Alu	AluSg
CAediting_33764	chr1_28507748_+	SINE	Alu	AluSg
CAediting_33765	chr1_28507759_+	SINE	Alu	AluSg
CAediting_33766	chr1_28507790_+	SINE	Alu	AluSg
CAediting_33767	chr1_28507804_+	SINE	Alu	AluSg
CAediting_33768	chr1_28507827_+	SINE	Alu	AluSg
CAediting_33769	chr1_28507867_+	SINE	Alu	AluSg
CAediting_33770	chr1_28507868_+	SINE	Alu	AluSg
CAediting_33771	chr1_28507869_+	SINE	Alu	AluSg
CAediting_33772	chr1_28507880_+	SINE	Alu	AluSg
CAediting_33773	chr1_28507882_+	SINE	Alu	AluSg
CAediting_33774	chr1_28507889_+	SINE	Alu	AluSg
CAediting_33775	chr1_28509017_+	SINE	Alu	AluSz6
CAediting_33776	chr1_28509037_+	SINE	Alu	AluSz6
CAediting_33777	chr1_28509038_+	SINE	Alu	AluSz6
CAediting_33779	chr1_28509341_+	SINE	Alu	AluSx3
CAediting_33780	chr1_28509346_+	SINE	Alu	AluSx3
CAediting_33781	chr1_28509368_+	SINE	Alu	AluSx3
CAediting_33782	chr1_28509371_+	SINE	Alu	AluSx3
CAediting_33783	chr1_28509381_+	SINE	Alu	AluSx3
CAediting_33784	chr1_28509383_+	SINE	Alu	AluSx3
CAediting_33785	chr1_28509391_+	SINE	Alu	AluSx3
CAediting_33786	chr1_28509394_+	SINE	Alu	AluSx3
CAediting_33787	chr1_28509397_+	SINE	Alu	AluSx3
CAediting_33788	chr1_28509399_+	SINE	Alu	AluSx3
CAediting_33789	chr1_28509407_+	SINE	Alu	AluSx3
CAediting_33790	chr1_28509416_+	SINE	Alu	AluSx3
CAediting_33791	chr1_28509425_+	SINE	Alu	AluSx3
CAediting_33792	chr1_28509427_+	SINE	Alu	AluSx3
CAediting_33793	chr1_28509432_+	SINE	Alu	AluSx3
CAediting_33794	chr1_28509444_+	SINE	Alu	AluSx3
CAediting_33795	chr1_28509491_+	SINE	Alu	AluSx3
CAediting_33796	chr1_28509501_+	SINE	Alu	AluSx3
CAediting_33797	chr1_28509513_+	SINE	Alu	AluSx3
CAediting_33799	chr1_28510360_+	SINE	Alu	AluSc
CAediting_33800	chr1_28510374_+	SINE	Alu	AluSc
CAediting_33801	chr1_28510376_+	SINE	Alu	AluSc
CAediting_33802	chr1_28510382_+	SINE	Alu	AluSc
CAediting_33803	chr1_28510383_+	SINE	Alu	AluSc
CAediting_33804	chr1_28510391_+	SINE	Alu	AluSc
CAediting_33805	chr1_28510416_+	SINE	Alu	AluSc
CAediting_33806	chr1_28510423_+	SINE	Alu	AluSc
CAediting_33807	chr1_28510436_+	SINE	Alu	AluSc
CAediting_33808	chr1_28510437_+	SINE	Alu	AluSc
CAediting_33809	chr1_28510446_+	SINE	Alu	AluSc
CAediting_33810	chr1_28510447_+	SINE	Alu	AluSc
CAediting_33811	chr1_28510461_+	SINE	Alu	AluSc
CAediting_33812	chr1_28510462_+	SINE	Alu	AluSc
CAediting_33813	chr1_28510463_+	SINE	Alu	AluSc
CAediting_33814	chr1_28510464_+	SINE	Alu	AluSc
CAediting_33815	chr1_28510465_+	SINE	Alu	AluSc
CAediting_33816	chr1_28510469_+	SINE	Alu	AluSc
CAediting_33817	chr1_28510470_+	SINE	Alu	AluSc
CAediting_33818	chr1_28510471_+	SINE	Alu	AluSc
CAediting_33819	chr1_28510474_+	SINE	Alu	AluSc
CAediting_33820	chr1_28510494_+	SINE	Alu	AluSc
CAediting_33821	chr1_28510509_+	SINE	Alu	AluSc
CAediting_33822	chr1_28510516_+	SINE	Alu	AluSc
CAediting_33823	chr1_28510525_+	SINE	Alu	AluSc
CAediting_33824	chr1_28510603_+	SINE	Alu	AluSc

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RNA A-to-I editing events in the alternative splicing sites for SNHG3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000242125.3.SNHG3.

Correlation between RNA A-to-I editing and PSI for ENSG00000242125.3.SNHG3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SNHG3

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

LUAD.CAediting_33791.ENSG00000242125.SNHG3.png
Soverview

LUSC.CAediting_33791.ENSG00000242125.SNHG3.png
Soverview

SARC.CAediting_33791.ENSG00000242125.SNHG3.png
Soverview

UCEC.CAediting_33791.ENSG00000242125.SNHG3.png
Soverview

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Protein coding region RNA A-to-I editings for SNHG3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SNHG3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_33790	chr1_28509416_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4801	28509412	28509417	6mer	28509396	28509418	141	-15.7
CAediting_33797	chr1_28509513_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-106a-3p	28509510	28509515	6mer	28509495	28509516	141	-21.13
CAediting_33799	chr1_28510360_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3940-3p	28510358	28510364	7mer-m8	28510344	28510365	144	-15.48
CAediting_33802	chr1_28510382_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-638	28510382	28510388	7mer-1a	28510364	28510388	155	-35.53
CAediting_33808	chr1_28510437_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3190-5p	28510431	28510437	7mer-m8	28510419	28510438	145	-16.08
CAediting_33808	chr1_28510437_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-5580-5p	28510433	28510438	6mer	28510415	28510439	142	-19.61
CAediting_33809	chr1_28510446_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-1229-3p	28510441	28510447	7mer-m8	28510424	28510448	146	-14.04
CAediting_33810	chr1_28510447_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3158-3p	28510445	28510451	7mer-m8	28510427	28510452	154	-23.07
CAediting_33810	chr1_28510447_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-412-3p	28510441	28510447	7mer-m8	28510426	28510448	151	-16.28
CAediting_33810	chr1_28510447_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-6754-3p	28510441	28510447	7mer-m8	28510428	28510448	154	-18.35
CAediting_33811	chr1_28510461_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-30a-3p	28510458	28510465	8mer-1a	28510441	28510465	154	-14.69
CAediting_33811	chr1_28510461_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-30d-3p	28510458	28510465	8mer-1a	28510440	28510465	155	-17.38
CAediting_33811	chr1_28510461_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-30e-3p	28510458	28510465	8mer-1a	28510441	28510465	154	-15.5
CAediting_33813	chr1_28510463_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-630	28510462	28510469	8mer-1a	28510443	28510469	155	-19.51
CAediting_33817	chr1_28510470_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4742-3p	28510464	28510471	8mer-1a	28510449	28510471	142	-14.28
CAediting_33817	chr1_28510470_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4778-5p	28510467	28510474	8mer-1a	28510453	28510474	145	-10.24
CAediting_33775	chr1_28509017_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3940-3p	28509015	28509021	7mer-m8	28509001	28509022	151	-22.47
CAediting_33777	chr1_28509038_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-5002-3p	28509035	28509040	6mer	28509020	28509041	142	-23.35
CAediting_33778	chr1_28509077_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-450b-5p	28509075	28509081	7mer-m8	28509059	28509082	148	-11.38
CAediting_33781	chr1_28509368_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-6852-5p	28509364	28509369	6mer	28509351	28509370	149	-26.62
CAediting_33782	chr1_28509371_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3614-5p	28509365	28509371	7mer-m8	28509349	28509372	152	-25.27
CAediting_33782	chr1_28509371_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4691-3p	28509369	28509375	7mer-m8	28509349	28509376	150	-21.56
CAediting_33783	chr1_28509381_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-17-3p	28509378	28509384	7mer-m8	28509363	28509385	162	-20.42
CAediting_33785	chr1_28509391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-12121	28509389	28509394	6mer	28509375	28509395	143	-17.66
CAediting_33785	chr1_28509391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-1227-3p	28509389	28509395	7mer-m8	28509377	28509396	146	-13.18
CAediting_33785	chr1_28509391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3064-3p	28509388	28509394	7mer-m8	28509374	28509395	146	-16.2
CAediting_33785	chr1_28509391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3085-5p	28509390	28509397	8mer-1a	28509369	28509397	151	-24.01
CAediting_33787	chr1_28509397_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-1250-5p	28509391	28509397	7mer-m8	28509378	28509398	150	-21.5
CAediting_33787	chr1_28509397_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4466	28509395	28509401	7mer-m8	28509385	28509402	143	-22.71
CAediting_33787	chr1_28509397_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4746-3p	28509392	28509399	8mer-1a	28509378	28509399	149	-23.76
CAediting_33787	chr1_28509397_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-675-5p	28509395	28509401	7mer-m8	28509380	28509402	142	-20.03
CAediting_33793	chr1_28509432_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-6771-3p	28509431	28509437	7mer-m8	28509417	28509438	158	-18.1
CAediting_33800	chr1_28510374_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4466	28510373	28510378	6mer	28510362	28510379	144	-34.56
CAediting_33801	chr1_28510376_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-1268a	28510373	28510379	7mer-m8	28510363	28510380	141	-22.15
CAediting_33801	chr1_28510376_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-1268b	28510373	28510379	7mer-m8	28510361	28510380	141	-24
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-518e-3p	28510388	28510395	8mer-1a	28510375	28510395	140	-11.24
CAediting_33818	chr1_28510471_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-643	28510465	28510472	8mer-1a	28510450	28510472	151	-19.17
CAediting_33822	chr1_28510516_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-6728-3p	28510511	28510516	6mer	28510497	28510517	146	-26.67
CAediting_33822	chr1_28510516_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-891b	28510515	28510520	6mer	28510499	28510521	140	-19.02
CAediting_33824	chr1_28510603_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-1248	28510601	28510607	7mer-m8	28510584	28510608	156	-15.05
CAediting_33820	chr1_28510494_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-6722-5p	28510490	28510496	7mer-m8	28510478	28510497	159	-29.14
CAediting_33789	chr1_28509407_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3157-5p	28509402	28509408	7mer-m8	28509387	28509409	160	-23.31
CAediting_33789	chr1_28509407_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-34a-3p	28509404	28509410	7mer-m8	28509389	28509411	154	-10.89
CAediting_33821	chr1_28510509_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-18a-3p	28510509	28510515	7mer-1a	28510495	28510515	140	-25.5
CAediting_33821	chr1_28510509_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-1913	28510508	28510515	8mer-1a	28510490	28510515	154	-26.82
CAediting_33821	chr1_28510509_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-6849-3p	28510503	28510509	7mer-m8	28510482	28510510	147	-27.82
CAediting_33780	chr1_28509346_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4485-5p	28509340	28509346	7mer-m8	28509332	28509347	140	-18.63
CAediting_33780	chr1_28509346_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-589-5p	28509345	28509351	7mer-m8	28509332	28509352	152	-20.87
CAediting_33780	chr1_28509346_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-7153-5p	28509346	28509351	6mer	28509329	28509352	144	-21.35

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_33781	chr1_28509368_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-12126	28509364	28509371	8mer-1a	28509348	28509371	147	-13.23
CAediting_33775	chr1_28509017_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-1285-3p	28509013	28509018	6mer	28508998	28509019	152	-26.1
CAediting_33783	chr1_28509381_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-20b-3p	28509378	28509384	7mer-m8	28509363	28509385	153	-15.95
CAediting_33784	chr1_28509383_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-20b-3p	28509378	28509384	7mer-m8	28509363	28509385	153	-15.95
CAediting_33823	chr1_28510525_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-23a-5p	28510522	28510528	7mer-m8	28510509	28510529	145	-16.72
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-302a-3p	28510388	28510395	8mer-1a	28510374	28510395	147	-16.26
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-302b-3p	28510388	28510395	8mer-1a	28510373	28510395	141	-10.13
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-302c-3p	28510388	28510395	8mer-1a	28510373	28510395	141	-13.47
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-302d-3p	28510388	28510395	8mer-1a	28510374	28510395	147	-15.5
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-302e	28510388	28510395	8mer-1a	28510379	28510395	141	-10.13
CAediting_33799	chr1_28510360_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3085-3p	28510355	28510361	7mer-m8	28510341	28510362	150	-22.54
CAediting_33806	chr1_28510423_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3675-3p	28510422	28510428	7mer-m8	28510408	28510429	140	-8.37
CAediting_33791	chr1_28509425_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3675-3p	28509424	28509430	7mer-m8	28509410	28509431	145	-12.58
CAediting_33792	chr1_28509427_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3675-3p	28509424	28509430	7mer-m8	28509410	28509431	145	-12.58
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-372-3p	28510388	28510395	8mer-1a	28510373	28510395	152	-13.88
CAediting_33788	chr1_28509399_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-3934-5p	28509397	28509403	7mer-m8	28509383	28509404	150	-23.83
CAediting_33807	chr1_28510436_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4435	28510430	28510437	8mer-1a	28510415	28510437	148	-17.49
CAediting_33795	chr1_28509491_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4478	28509489	28509495	7mer-m8	28509480	28509496	154	-23.4
CAediting_33775	chr1_28509017_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4486	28509012	28509018	7mer-m8	28509003	28509019	145	-19.61
CAediting_33794	chr1_28509444_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4517	28509441	28509446	6mer	28509424	28509447	148	-16.02
CAediting_33779	chr1_28509341_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4539	28509337	28509342	6mer	28509324	28509343	141	-21.23
CAediting_33806	chr1_28510423_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4777-5p	28510419	28510425	7mer-m8	28510404	28510426	150	-13.34
CAediting_33795	chr1_28509491_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-485-5p	28509490	28509496	7mer-m8	28509476	28509497	145	-17.12
CAediting_33803	chr1_28510383_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-5089-5p	28510382	28510388	7mer-m8	28510367	28510389	148	-14.01
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-512-3p	28510387	28510393	7mer-m8	28510373	28510394	149	-15.79
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-520a-3p	28510388	28510395	8mer-1a	28510374	28510395	140	-11.73
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-520b-3p	28510388	28510395	8mer-1a	28510375	28510395	140	-14.23
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-520c-3p	28510388	28510395	8mer-1a	28510374	28510395	140	-14.65
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-520d-3p	28510388	28510395	8mer-1a	28510372	28510395	142	-15.71
CAediting_33804	chr1_28510391_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-520e-3p	28510388	28510395	8mer-1a	28510375	28510395	143	-14.09
CAediting_33820	chr1_28510494_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-552-3p	28510493	28510499	7mer-m8	28510479	28510500	141	-12.39
CAediting_33794	chr1_28509444_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-5583-3p	28509440	28509446	7mer-m8	28509425	28509447	147	-8.07
CAediting_33782	chr1_28509371_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-5690	28509369	28509375	7mer-m8	28509356	28509376	145	-14.96
CAediting_33779	chr1_28509341_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-6078	28509339	28509346	8mer-1a	28509328	28509346	149	-21.5
CAediting_33799	chr1_28510360_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-647	28510354	28510360	7mer-m8	28510340	28510361	150	-17.94
CAediting_33799	chr1_28510360_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-6504-5p	28510355	28510361	7mer-m8	28510341	28510362	154	-21.73
CAediting_33775	chr1_28509017_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-661	28509014	28509020	7mer-m8	28508998	28509021	146	-20.28
CAediting_33810	chr1_28510447_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-6823-5p	28510446	28510452	7mer-m8	28510433	28510453	147	-17.98
CAediting_33795	chr1_28509491_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-6884-5p	28509490	28509496	7mer-m8	28509476	28509497	154	-23.23
CAediting_33793	chr1_28509432_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-6891-3p	28509428	28509434	7mer-m8	28509415	28509435	146	-12.88
CAediting_33795	chr1_28509491_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-7160-5p	28509487	28509493	7mer-m8	28509476	28509494	154	-20.89
CAediting_33795	chr1_28509491_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-7162-3p	28509486	28509492	7mer-m8	28509475	28509493	150	-18.37
CAediting_33820	chr1_28510494_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-764	28510492	28510498	7mer-m8	28510476	28510499	155	-25.35
CAediting_33805	chr1_28510416_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-8070	28510411	28510417	7mer-1a	28510398	28510417	140	-15.93
CAediting_33781	chr1_28509368_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-887-5p	28509362	28509368	7mer-m8	28509350	28509369	143	-19.73
CAediting_33775	chr1_28509017_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-939-3p	28509013	28509019	7mer-m8	28509000	28509020	141	-15.42

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000242125.3	ENST00000413987.1	hsa-miR-624-3p	28510447	28510453	7mer-m8	28510434	28510454	144	-13.91
CAediting_414656	chr5_72878640_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4804-3p	28510027	28510033	7mer-m8	28510011	28510034	141	-10.42
CAediting_524911	chr7_5495852_-	ENSG00000242125.3	ENST00000413987.1	hsa-miR-589-3p	28509004	28509010	7mer-m8	28508988	28509011	145	-17.44

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_573001	chr7_92204086_-	ENSG00000242125.3	ENST00000413987.1	hsa-miR-1285-5p	28510188	28510194	7mer-m8	28510174	28510195	150	-19.49
CAediting_414656	chr5_72878640_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-4804-3p	28510143	28510149	7mer-m8	28510128	28510150	148	-14.35
CAediting_228905	chr2_188297554_+	ENSG00000242125.3	ENST00000413987.1	hsa-miR-561-3p	28510020	28510026	7mer-m8	28510006	28510027	140	-11.73

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for SNHG3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000413987.1	retained_intron
ENST00000437681.1	retained_intron

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_33775	ENST00000413987.1	chr1_28509017_+	-811.20	-811.90	-845.10
CAediting_33776	ENST00000413987.1	chr1_28509037_+	-813.10	-811.90	-845.10
CAediting_33777	ENST00000413987.1	chr1_28509038_+	-815.30	-811.90	-845.10
CAediting_33778	ENST00000413987.1	chr1_28509077_+	-815.10	-811.90	-845.10
CAediting_33779	ENST00000413987.1	chr1_28509341_+	-814.50	-811.90	-845.10
CAediting_33780	ENST00000413987.1	chr1_28509346_+	-811.40	-811.90	-845.10
CAediting_33781	ENST00000413987.1	chr1_28509368_+	-811.80	-811.90	-845.10
CAediting_33782	ENST00000413987.1	chr1_28509371_+	-812.90	-811.90	-845.10
CAediting_33783	ENST00000413987.1	chr1_28509381_+	-813.50	-811.90	-845.10
CAediting_33784	ENST00000413987.1	chr1_28509383_+	-812.10	-811.90	-845.10
CAediting_33785	ENST00000413987.1	chr1_28509391_+	-811.40	-811.90	-845.10
CAediting_33786	ENST00000413987.1	chr1_28509394_+	-811.50	-811.90	-845.10
CAediting_33787	ENST00000413987.1	chr1_28509397_+	-811.50	-811.90	-845.10
CAediting_33788	ENST00000413987.1	chr1_28509399_+	-815.30	-811.90	-845.10
CAediting_33789	ENST00000413987.1	chr1_28509407_+	-811.50	-811.90	-845.10
CAediting_33790	ENST00000413987.1	chr1_28509416_+	-811.90	-811.90	-845.10
CAediting_33791	ENST00000413987.1	chr1_28509425_+	-811.60	-811.90	-845.10
CAediting_33792	ENST00000413987.1	chr1_28509427_+	-811.90	-811.90	-845.10
CAediting_33793	ENST00000413987.1	chr1_28509432_+	-818.50	-811.90	-845.10
CAediting_33794	ENST00000413987.1	chr1_28509444_+	-817.40	-811.90	-845.10
CAediting_33795	ENST00000413987.1	chr1_28509491_+	-811.90	-811.90	-845.10
CAediting_33796	ENST00000413987.1	chr1_28509501_+	-811.60	-811.90	-845.10
CAediting_33797	ENST00000413987.1	chr1_28509513_+	-811.90	-811.90	-845.10
CAediting_33798	ENST00000413987.1	chr1_28510319_+	-810.90	-811.90	-845.10
CAediting_33799	ENST00000413987.1	chr1_28510360_+	-818.10	-811.90	-845.10
CAediting_33800	ENST00000413987.1	chr1_28510374_+	-811.50	-811.90	-845.10
CAediting_33801	ENST00000413987.1	chr1_28510376_+	-811.20	-811.90	-845.10
CAediting_33802	ENST00000413987.1	chr1_28510382_+	-812.00	-811.90	-845.10
CAediting_33803	ENST00000413987.1	chr1_28510383_+	-811.90	-811.90	-845.10
CAediting_33804	ENST00000413987.1	chr1_28510391_+	-811.50	-811.90	-845.10
CAediting_33805	ENST00000413987.1	chr1_28510416_+	-817.40	-811.90	-845.10
CAediting_33806	ENST00000413987.1	chr1_28510423_+	-815.10	-811.90	-845.10
CAediting_33807	ENST00000413987.1	chr1_28510436_+	-811.60	-811.90	-845.10
CAediting_33808	ENST00000413987.1	chr1_28510437_+	-811.60	-811.90	-845.10
CAediting_33809	ENST00000413987.1	chr1_28510446_+	-812.00	-811.90	-845.10
CAediting_33810	ENST00000413987.1	chr1_28510447_+	-811.90	-811.90	-845.10
CAediting_33811	ENST00000413987.1	chr1_28510461_+	-812.00	-811.90	-845.10
CAediting_33812	ENST00000413987.1	chr1_28510462_+	-812.00	-811.90	-845.10
CAediting_33813	ENST00000413987.1	chr1_28510463_+	-812.00	-811.90	-845.10
CAediting_33814	ENST00000413987.1	chr1_28510464_+	-812.00	-811.90	-845.10
CAediting_33815	ENST00000413987.1	chr1_28510465_+	-811.90	-811.90	-845.10
CAediting_33816	ENST00000413987.1	chr1_28510469_+	-811.60	-811.90	-845.10
CAediting_33817	ENST00000413987.1	chr1_28510470_+	-812.00	-811.90	-845.10
CAediting_33818	ENST00000413987.1	chr1_28510471_+	-812.00	-811.90	-845.10
CAediting_33819	ENST00000413987.1	chr1_28510474_+	-811.90	-811.90	-845.10
CAediting_33820	ENST00000413987.1	chr1_28510494_+	-816.90	-811.90	-845.10
CAediting_33821	ENST00000413987.1	chr1_28510509_+	-811.00	-811.90	-845.10
CAediting_33822	ENST00000413987.1	chr1_28510516_+	-811.90	-811.90	-845.10
CAediting_33823	ENST00000413987.1	chr1_28510525_+	-811.90	-811.90	-845.10
CAediting_33824	ENST00000413987.1	chr1_28510603_+	-814.00	-811.90	-845.10
CAediting_33755	ENST00000437681.1	chr1_28506831_+	-812.90	-810.70	-869.80
CAediting_33756	ENST00000437681.1	chr1_28506841_+	-810.60	-810.70	-869.80
CAediting_33757	ENST00000437681.1	chr1_28506851_+	-810.70	-810.70	-869.80
CAediting_33758	ENST00000437681.1	chr1_28506885_+	-813.40	-810.70	-869.80
CAediting_33759	ENST00000437681.1	chr1_28506931_+	-813.70	-810.70	-869.80
CAediting_33760	ENST00000437681.1	chr1_28507053_+	-810.00	-810.70	-869.80
CAediting_33761	ENST00000437681.1	chr1_28507711_+	-812.40	-810.70	-869.80
CAediting_33762	ENST00000437681.1	chr1_28507733_+	-816.40	-810.70	-869.80
CAediting_33763	ENST00000437681.1	chr1_28507746_+	-809.70	-810.70	-869.80
CAediting_33764	ENST00000437681.1	chr1_28507748_+	-810.50	-810.70	-869.80
CAediting_33765	ENST00000437681.1	chr1_28507759_+	-812.00	-810.70	-869.80
CAediting_33766	ENST00000437681.1	chr1_28507790_+	-810.70	-810.70	-869.80
CAediting_33767	ENST00000437681.1	chr1_28507804_+	-810.70	-810.70	-869.80
CAediting_33768	ENST00000437681.1	chr1_28507827_+	-810.70	-810.70	-869.80
CAediting_33769	ENST00000437681.1	chr1_28507867_+	-813.90	-810.70	-869.80
CAediting_33770	ENST00000437681.1	chr1_28507868_+	-811.90	-810.70	-869.80
CAediting_33771	ENST00000437681.1	chr1_28507869_+	-812.10	-810.70	-869.80
CAediting_33772	ENST00000437681.1	chr1_28507880_+	-810.70	-810.70	-869.80
CAediting_33773	ENST00000437681.1	chr1_28507882_+	-810.60	-810.70	-869.80
CAediting_33774	ENST00000437681.1	chr1_28507889_+	-814.00	-810.70	-869.80
CAediting_33775	ENST00000437681.1	chr1_28509017_+	-811.60	-810.70	-869.80
CAediting_33776	ENST00000437681.1	chr1_28509037_+	-814.60	-810.70	-869.80
CAediting_33777	ENST00000437681.1	chr1_28509038_+	-810.70	-810.70	-869.80
CAediting_33778	ENST00000437681.1	chr1_28509077_+	-813.20	-810.70	-869.80
CAediting_33779	ENST00000437681.1	chr1_28509341_+	-810.70	-810.70	-869.80
CAediting_33780	ENST00000437681.1	chr1_28509346_+	-813.60	-810.70	-869.80
CAediting_33781	ENST00000437681.1	chr1_28509368_+	-813.30	-810.70	-869.80
CAediting_33782	ENST00000437681.1	chr1_28509371_+	-812.40	-810.70	-869.80
CAediting_33783	ENST00000437681.1	chr1_28509381_+	-810.90	-810.70	-869.80
CAediting_33784	ENST00000437681.1	chr1_28509383_+	-811.30	-810.70	-869.80
CAediting_33785	ENST00000437681.1	chr1_28509391_+	-812.70	-810.70	-869.80
CAediting_33786	ENST00000437681.1	chr1_28509394_+	-812.40	-810.70	-869.80
CAediting_33787	ENST00000437681.1	chr1_28509397_+	-810.30	-810.70	-869.80
CAediting_33788	ENST00000437681.1	chr1_28509399_+	-814.30	-810.70	-869.80
CAediting_33789	ENST00000437681.1	chr1_28509407_+	-809.80	-810.70	-869.80
CAediting_33790	ENST00000437681.1	chr1_28509416_+	-814.00	-810.70	-869.80
CAediting_33791	ENST00000437681.1	chr1_28509425_+	-810.70	-810.70	-869.80
CAediting_33792	ENST00000437681.1	chr1_28509427_+	-811.60	-810.70	-869.80
CAediting_33793	ENST00000437681.1	chr1_28509432_+	-810.70	-810.70	-869.80
CAediting_33794	ENST00000437681.1	chr1_28509444_+	-810.90	-810.70	-869.80
CAediting_33795	ENST00000437681.1	chr1_28509491_+	-811.00	-810.70	-869.80
CAediting_33796	ENST00000437681.1	chr1_28509501_+	-812.70	-810.70	-869.80
CAediting_33797	ENST00000437681.1	chr1_28509513_+	-810.70	-810.70	-869.80

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Relation with ADAR for SNHG3

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
STAD	CAediting_33791	chr1_28509425_+	.	.	0.00840977232311504	0.228491941435675	.	.
PCPG	CAediting_33791	chr1_28509425_+	0.0347438092597684	0.254620575835794	.	.	.	.
BRCA	CAediting_33799	chr1_28510360_+	0.032675976108077	0.123989936241902	.	.	.	.
LUAD	CAediting_33799	chr1_28510360_+	0.00139860572127103	0.25444607748969	.	.	.	.
HNSC	CAediting_33799	chr1_28510360_+	.	.	.	.	0.0128886794713741	0.218428617045156
LUSC	CAediting_33803	chr1_28510383_+	.	.	.	.	0.00915257816074212	0.318497529272559
UCEC	CAediting_33803	chr1_28510383_+	0.0488254872740711	0.231437763828651	.	.	.	.
ESCA	CAediting_33803	chr1_28510383_+	.	.	.	.	0.0220464304032552	0.279377829019698
ESCA	CAediting_33808	chr1_28510437_+	.	.	0.0448658889117751	0.255702308032082	.	.
BLCA	CAediting_33811	chr1_28510461_+	0.00184303864505266	0.279211325705496	.	.	.	.
HNSC	CAediting_33811	chr1_28510461_+	0.00141771044341982	0.35966431271901	.	.	0.0210597100939288	0.264277398732943
TGCT	CAediting_33811	chr1_28510461_+	0.00218681222405544	0.388049751654871	.	.	.	.
BRCA	CAediting_33812	chr1_28510462_+	0.0369287034855206	0.13126226497696	.	.	.	.
HNSC	CAediting_33812	chr1_28510462_+	.	.	.	.	0.0410084926626744	0.192569039441076
SARC	CAediting_33812	chr1_28510462_+	0.00528272584700444	0.377830616487474	.	.	.	.
TGCT	CAediting_33812	chr1_28510462_+	0.000643823803451633	0.373495279166761	.	.	.	.
UCEC	CAediting_33813	chr1_28510463_+	0.0100886164999341	0.228438835030864	.	.	.	.
TGCT	CAediting_33813	chr1_28510463_+	0.00399273811685323	0.396281066253837	.	.	.	.
BLCA	CAediting_33814	chr1_28510464_+	.	.	0.00138483027209776	0.369875857286287	.	.

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Relation with cancer stages for SNHG3

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
CESC	clinical_stage	CAediting_33799	chr1_28510360_+	0.0095222300403516	-0.213198951640523
CESC	clinical_stage	CAediting_33812	chr1_28510462_+	0.0362438239524524	-0.177176326641356
ESCA	clinical_stage	CAediting_33799	chr1_28510360_+	0.0130192513191478	-0.440998274312716
ESCA	clinical_stage	CAediting_33814	chr1_28510464_+	0.0439703000829693	-0.544762521627724
HNSC	clinical_stage	CAediting_33814	chr1_28510464_+	0.00731565212621648	-0.374850672465051
KIRC	pathologic_stage	CAediting_33799	chr1_28510360_+	0.00683116783176296	0.294751561236668
KIRC	pathologic_stage	CAediting_33812	chr1_28510462_+	0.0150697891362844	0.302639717755226
LIHC	pathologic_stage	CAediting_33791	chr1_28509425_+	0.0229503834031855	0.321178862151667
THCA	pathologic_stage	CAediting_33813	chr1_28510463_+	0.0493431784199314	0.279481843148778

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Relation with survival for SNHG3

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
BLCA	CAediting_33812	chr1_28510462_+	0.0235039227186583	0.00641287	0.0637509
HNSC	CAediting_33811	chr1_28510461_+	0.0451700780882575	0.0139301	0.0134204
SKCM	CAediting_33811	chr1_28510461_+	0.0182207198977778	0.00582844	0.00620268
SARC	CAediting_33812	chr1_28510462_+	0.0215821595935736	0.0288056	0.0257703

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RelatedDrugs for SNHG3

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SNHG3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene