![]() |
||||||
|
![]() | |
![]() | |
![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
![]() | |
![]() | |
![]() | The effects of the RNA editing to the stability of the RNA structures |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Editing gene: FBXO30 (CAeditome ID:84085) |
Gene summary for FBXO30 |
![]() |
Gene information | Gene symbol | FBXO30 | Gene ID | 84085 |
Gene name | F-box protein 30 | |
Synonyms | Fbx30 | |
Cytomap | 6q24.3 | |
Type of gene | protein-coding | |
Description | F-box only protein 30F-box domain proteinF-box only protein, helicase, 18 | |
Modification date | 20210518 | |
UniProtAcc | Q8TB52 | |
Context |
![]() |
Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for FBXO30 |
![]() |
![]() |
![]() |
![]() |
CAediting_507997(145797559, -), CAediting_507998(145797562, -), |
Top |
RNA editing positional annotations for FBXO30 using Annovar |
![]() |
CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
![]() |
CAeditome ID | Position | Variant type |
CAediting_507997 | chr6_145797559_- | UTR3 |
CAediting_507998 | chr6_145797562_- | UTR3 |
![]() |
CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_507997 | chr6_145797559_- | DNA | hAT-Charlie | MER5A |
CAediting_507998 | chr6_145797562_- | DNA | hAT-Charlie | MER5A |
Top |
RNA A-to-I editing events in the alternative splicing sites for FBXO30 |
![]() |
AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
![]() |
![]() |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for FBXO30 |
![]() * The grey color means N/A. |
![]() |
![]() |
![]() |
![]() * Click on the image to enlarge it in a new window. |
Top |
Protein coding region RNA A-to-I editings for FBXO30 |
![]() * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for FBXO30 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_393 | chr1_1167164_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-200b-3p | 145794729 | 145794735 | 7mer-m8 | 145794728 | 145794750 | 149 | -10.41 |
CAediting_688080 | chr9_63819626_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-4477b | 145797728 | 145797734 | 7mer-m8 | 145797727 | 145797748 | 140 | -10.1 |
CAediting_1160181 | chr17_7017644_- | ENSG00000118496.4 | ENST00000237281 | hsa-miR-195-3p | 145795083 | 145795089 | 7mer-m8 | 145795082 | 145795102 | 146 | -13.02 |
CAediting_1351755 | chr19_40282625_- | ENSG00000118496.4 | ENST00000237281 | hsa-miR-641 | 145797977 | 145797982 | 6mer | 145797976 | 145798003 | 144 | -20.44 |
CAediting_228905 | chr2_188297554_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-561-3p | 145798811 | 145798817 | 7mer-m8 | 145798810 | 145798832 | 144 | -10.96 |
CAediting_228905 | chr2_188297554_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-561-3p | 145797525 | 145797530 | 6mer | 145797524 | 145797545 | 140 | -16.69 |
CAediting_228905 | chr2_188297554_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-561-3p | 145795317 | 145795322 | 6mer | 145795316 | 145795337 | 140 | -12.87 |
CAediting_442554 | chr5_154685830_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-1303 | 145795444 | 145795451 | 8mer-1a | 145795444 | 145795465 | 142 | -12.68 |
CAediting_524911 | chr7_5495852_- | ENSG00000118496.4 | ENST00000237281 | hsa-miR-589-3p | 145795917 | 145795924 | 8mer-1a | 145795917 | 145795941 | 150 | -16.2 |
CAediting_468389 | chr6_31355314_- | ENSG00000118496.4 | ENST00000237281 | hsa-miR-6891-5p | 145797883 | 145797888 | 6mer | 145797882 | 145797900 | 145 | -24.64 |
![]() |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_573001 | chr7_92204086_- | ENSG00000118496.4 | ENST00000237281 | hsa-miR-1285-5p | 145798547 | 145798553 | 7mer-m8 | 145798546 | 145798564 | 144 | -14.95 |
CAediting_573000 | chr7_92204081_- | ENSG00000118496.4 | ENST00000237281 | hsa-miR-1285-5p | 145798547 | 145798553 | 7mer-m8 | 145798546 | 145798564 | 144 | -14.95 |
CAediting_442554 | chr5_154685830_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-1303 | 145799592 | 145799598 | 7mer-m8 | 145799591 | 145799612 | 140 | -10.27 |
CAediting_1160181 | chr17_7017644_- | ENSG00000118496.4 | ENST00000237281 | hsa-miR-195-3p | 145794074 | 145794080 | 7mer-m8 | 145794073 | 145794094 | 140 | -7.42 |
CAediting_393 | chr1_1167164_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-200b-3p | 145798923 | 145798929 | 7mer-m8 | 145798922 | 145798941 | 144 | -7.55 |
CAediting_393 | chr1_1167164_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-200b-3p | 145797234 | 145797239 | 6mer | 145797223 | 145797244 | 140 | -8.43 |
CAediting_393 | chr1_1167164_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-200b-3p | 145797224 | 145797229 | 6mer | 145797223 | 145797244 | 140 | -8.43 |
CAediting_393 | chr1_1167164_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-200b-3p | 145794553 | 145794559 | 7mer-m8 | 145794552 | 145794574 | 143 | -9.48 |
CAediting_1306323 | chr19_13836462_- | ENSG00000118496.4 | ENST00000237281 | hsa-miR-27a-3p | 145798550 | 145798556 | 7mer-m8 | 145798549 | 145798569 | 147 | -15.07 |
CAediting_228905 | chr2_188297554_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-561-3p | 145794374 | 145794381 | 8mer-1a | 145794374 | 145794394 | 153 | -7.9 |
CAediting_228905 | chr2_188297554_+ | ENSG00000118496.4 | ENST00000237281 | hsa-miR-561-3p | 145800037 | 145800044 | 8mer-1a | 145800037 | 145800058 | 152 | -3.62 |
CAediting_1399425 | chr20_1392958_- | ENSG00000118496.4 | ENST00000237281 | hsa-miR-6869-5p | 145794389 | 145794395 | 7mer-m8 | 145794388 | 145794409 | 146 | -17.12 |
![]() |
Top |
The effects of the RNA editing to the stability of the RNA structures for FBXO30 |
![]() * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000237281.4 | protein_coding | ![]() | ![]() |
![]() |
CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_507997 | ENST00000237281.4 | chr6_145797559_- | -2245.10 | -2238.50 | -2251.30 |
CAediting_507998 | ENST00000237281.4 | chr6_145797562_- | -2244.70 | -2238.50 | -2251.30 |
Top |
Relation with ADAR for FBXO30 |
![]() |
Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LGG | CAediting_507997 | chr6_145797559_- | 3.18235070255745e-05 | 0.447324527972266 | . | . | . | . |
LGG | CAediting_507998 | chr6_145797562_- | 3.99373836142485e-08 | 0.547780286677487 | . | . | . | . |
Top |
Relation with cancer stages for FBXO30 |
![]() |
Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
Top |
Relation with survival for FBXO30 |
![]() |
Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
Top |
RelatedDrugs for FBXO30 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for FBXO30 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |