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Editing gene: SNX25 (CAeditome ID:83891)

Gene summary for SNX25

Gene summary

Gene information	Gene symbol	SNX25
	Gene ID	83891
	Gene name	sorting nexin 25
	Synonyms	MSTP043\|SBBI31
	Cytomap	4q35.1
	Type of gene	protein-coding
	Description	sorting nexin-25
	Modification date	20210518
	UniProtAcc	Q9H3E2
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SNX25	GO:0043231	Sorting nexin-25	0000052

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RNA A-to-I events for SNX25

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000109762.14

RNA A-to-I editing events in Cancer.

CAediting_394866(185214320, +), CAediting_394867(185214323, +), CAediting_394868(185214325, +), CAediting_394869(185214375, +), CAediting_394870(185214412, +), CAediting_394871(185220585, +), CAediting_394872(185235690, +), CAediting_394873(185237942, +), CAediting_394874(185243482, +), CAediting_394875(185243541, +), CAediting_394876(185243552, +), CAediting_394877(185246121, +), CAediting_394878(185246124, +), CAediting_394879(185246128, +), CAediting_394880(185246205, +), CAediting_394881(185248490, +), CAediting_394882(185248491, +), CAediting_394883(185248505, +), CAediting_394884(185248598, +), CAediting_394885(185256677, +), CAediting_394886(185269758, +), CAediting_394887(185269765, +), CAediting_394888(185269766, +), CAediting_394889(185269812, +), CAediting_394890(185279952, +), CAediting_394891(185280120, +), CAediting_394892(185282261, +), CAediting_394893(185286245, +), CAediting_394894(185286249, +), CAediting_394895(185292421, +), CAediting_394896(185292423, +), CAediting_394897(185303538, +), CAediting_394898(185303544, +), CAediting_394899(185303565, +), CAediting_394900(185303603, +), CAediting_394901(185304619, +), CAediting_394902(185312554, +), CAediting_394903(185312587, +), CAediting_394904(185312589, +), CAediting_394905(185312597, +), CAediting_394906(185312602, +), CAediting_394907(185312603, +), CAediting_394908(185312609, +), CAediting_394909(185312622, +), CAediting_394910(185312652, +), CAediting_394911(185312662, +), CAediting_394912(185312664, +), CAediting_394913(185312701, +), CAediting_394914(185312707, +), CAediting_394915(185312724, +), CAediting_394916(185312732, +), CAediting_394917(185312739, +), CAediting_394918(185312750, +), CAediting_394919(185312761, +), CAediting_394920(185312772, +), CAediting_394921(185312777, +), CAediting_394922(185312785, +), CAediting_394923(185312799, +), CAediting_394924(185312801, +), CAediting_394925(185314073, +), CAediting_394926(185314213, +), CAediting_394927(185314234, +), CAediting_394928(185314235, +), CAediting_394929(185314240, +), CAediting_394930(185314255, +), CAediting_394931(185314260, +), CAediting_394932(185314274, +), CAediting_394933(185314286, +), CAediting_394934(185314569, +), CAediting_394935(185314572, +), CAediting_394936(185314573, +), CAediting_394937(185314588, +), CAediting_394938(185314596, +), CAediting_394939(185314613, +), CAediting_394940(185314643, +), CAediting_394941(185314648, +), CAediting_394942(185314653, +), CAediting_394943(185314657, +), CAediting_394944(185314659, +), CAediting_394945(185314671, +), CAediting_394946(185314693, +), CAediting_394947(185314696, +), CAediting_394948(185314697, +), CAediting_394949(185314698, +), CAediting_394950(185314699, +), CAediting_394951(185314700, +), CAediting_394952(185314702, +), CAediting_394953(185314705, +), CAediting_394954(185314706, +), CAediting_394955(185314707, +), CAediting_394956(185314708, +), CAediting_394957(185314711, +), CAediting_394958(185314718, +), CAediting_394959(185314731, +), CAediting_394960(185314737, +), CAediting_394961(185314738, +), CAediting_394962(185314743, +), CAediting_394963(185314747, +), CAediting_394964(185314754, +), CAediting_394965(185314764, +), CAediting_394966(185314766, +), CAediting_394967(185314767, +), CAediting_394968(185314773, +), CAediting_394969(185314778, +), CAediting_394970(185314779, +), CAediting_394971(185314786, +), CAediting_394972(185314793, +), CAediting_394973(185314799, +), CAediting_394974(185314803, +), CAediting_394975(185314808, +), CAediting_394976(185314810, +), CAediting_394977(185314828, +), CAediting_394978(185314840, +), CAediting_394979(185314841, +), CAediting_394980(185314847, +), CAediting_394981(185314973, +), CAediting_394982(185314979, +), CAediting_394983(185314982, +), CAediting_394984(185314990, +), CAediting_394985(185315071, +), CAediting_394986(185315081, +), CAediting_394987(185315107, +), CAediting_394988(185315113, +), CAediting_394989(185315134, +), CAediting_394990(185315137, +), CAediting_394991(185315140, +), CAediting_394992(185315148, +), CAediting_394993(185315149, +), CAediting_394994(185315169, +), CAediting_394995(185315173, +), CAediting_394996(185315178, +), CAediting_394997(185315180, +), CAediting_394998(185315210, +), CAediting_394999(185315216, +), CAediting_395000(185315231, +), CAediting_395001(185315233, +), CAediting_395002(185315234, +), CAediting_395003(185315235, +), CAediting_395004(185315236, +), CAediting_395005(185315239, +), CAediting_395006(185315240, +), CAediting_395007(185315241, +), CAediting_395008(185315243, +), CAediting_395009(185315245, +), CAediting_395010(185315246, +), CAediting_395011(185315344, +), CAediting_395012(185315358, +), CAediting_395013(185315363, +), CAediting_395014(185315368, +), CAediting_395015(185315387, +), CAediting_395016(185315389, +), CAediting_395017(185315393, +), CAediting_395018(185315394, +), CAediting_395019(185315397, +), CAediting_395020(185315411, +), CAediting_395021(185315420, +), CAediting_395022(185315423, +), CAediting_395023(185315429, +), CAediting_395024(185315430, +), CAediting_395025(185315433, +), CAediting_395026(185315435, +), CAediting_395027(185315449, +), CAediting_395028(185315455, +), CAediting_395029(185315460, +), CAediting_395030(185315468, +), CAediting_395031(185315474, +), CAediting_395032(185315477, +), CAediting_395033(185315479, +), CAediting_395034(185315491, +), CAediting_395035(185315494, +), CAediting_395036(185315503, +), CAediting_395037(185315514, +), CAediting_395038(185315515, +), CAediting_395039(185315522, +), CAediting_395040(185315523, +), CAediting_395041(185315528, +), CAediting_395042(185315533, +), CAediting_395043(185315555, +), CAediting_395044(185315556, +), CAediting_395045(185315568, +), CAediting_395046(185315570, +), CAediting_395047(185315574, +), CAediting_395048(185315577, +), CAediting_395049(185315602, +), CAediting_395050(185321472, +), CAediting_395051(185321525, +), CAediting_395052(185321528, +), CAediting_395053(185321537, +), CAediting_395054(185334097, +), CAediting_395055(185334174, +), CAediting_395056(185334177, +), CAediting_395057(185335070, +), CAediting_395058(185335144, +), CAediting_395059(185344009, +), CAediting_395060(185344136, +), CAediting_395061(185345517, +), CAediting_395062(185345626, +), CAediting_395063(185345639, +), CAediting_395064(185345641, +), CAediting_395065(185345670, +), CAediting_395066(185345703, +), CAediting_395067(185345997, +), CAediting_395068(185359215, +),

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RNA editing positional annotations for SNX25 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_394866	chr4_185214320_+	ncRNA_intronic
CAediting_394867	chr4_185214323_+	ncRNA_intronic
CAediting_394868	chr4_185214325_+	ncRNA_intronic
CAediting_394869	chr4_185214375_+	ncRNA_intronic
CAediting_394870	chr4_185214412_+	ncRNA_intronic
CAediting_394871	chr4_185220585_+	ncRNA_intronic
CAediting_394872	chr4_185235690_+	ncRNA_intronic
CAediting_394873	chr4_185237942_+	ncRNA_intronic
CAediting_394874	chr4_185243482_+	ncRNA_intronic
CAediting_394875	chr4_185243541_+	ncRNA_intronic
CAediting_394876	chr4_185243552_+	ncRNA_intronic
CAediting_394877	chr4_185246121_+	ncRNA_intronic
CAediting_394878	chr4_185246124_+	ncRNA_intronic
CAediting_394879	chr4_185246128_+	ncRNA_intronic
CAediting_394880	chr4_185246205_+	ncRNA_intronic
CAediting_394881	chr4_185248490_+	ncRNA_intronic
CAediting_394882	chr4_185248491_+	ncRNA_intronic
CAediting_394883	chr4_185248505_+	ncRNA_intronic
CAediting_394884	chr4_185248598_+	ncRNA_intronic
CAediting_394885	chr4_185256677_+	ncRNA_intronic
CAediting_394886	chr4_185269758_+	intronic
CAediting_394887	chr4_185269765_+	intronic
CAediting_394888	chr4_185269766_+	intronic
CAediting_394889	chr4_185269812_+	intronic
CAediting_394890	chr4_185279952_+	intronic
CAediting_394891	chr4_185280120_+	intronic
CAediting_394892	chr4_185282261_+	intronic
CAediting_394893	chr4_185286245_+	intronic
CAediting_394894	chr4_185286249_+	intronic
CAediting_394895	chr4_185292421_+	intronic
CAediting_394896	chr4_185292423_+	intronic
CAediting_394897	chr4_185303538_+	ncRNA_intronic
CAediting_394898	chr4_185303544_+	ncRNA_intronic
CAediting_394899	chr4_185303565_+	ncRNA_intronic
CAediting_394900	chr4_185303603_+	ncRNA_intronic
CAediting_394901	chr4_185304619_+	ncRNA_intronic
CAediting_394902	chr4_185312554_+	ncRNA_intronic
CAediting_394903	chr4_185312587_+	ncRNA_intronic
CAediting_394904	chr4_185312589_+	ncRNA_intronic
CAediting_394905	chr4_185312597_+	ncRNA_intronic
CAediting_394906	chr4_185312602_+	ncRNA_intronic
CAediting_394907	chr4_185312603_+	ncRNA_intronic
CAediting_394908	chr4_185312609_+	ncRNA_intronic
CAediting_394909	chr4_185312622_+	ncRNA_intronic
CAediting_394910	chr4_185312652_+	ncRNA_intronic
CAediting_394911	chr4_185312662_+	ncRNA_intronic
CAediting_394912	chr4_185312664_+	ncRNA_intronic
CAediting_394913	chr4_185312701_+	ncRNA_intronic
CAediting_394914	chr4_185312707_+	ncRNA_intronic
CAediting_394915	chr4_185312724_+	ncRNA_intronic
CAediting_394916	chr4_185312732_+	ncRNA_intronic
CAediting_394917	chr4_185312739_+	ncRNA_intronic
CAediting_394918	chr4_185312750_+	ncRNA_intronic
CAediting_394919	chr4_185312761_+	ncRNA_intronic
CAediting_394920	chr4_185312772_+	ncRNA_intronic
CAediting_394921	chr4_185312777_+	ncRNA_intronic
CAediting_394922	chr4_185312785_+	ncRNA_intronic
CAediting_394923	chr4_185312799_+	ncRNA_intronic
CAediting_394924	chr4_185312801_+	ncRNA_intronic
CAediting_394925	chr4_185314073_+	ncRNA_intronic
CAediting_394926	chr4_185314213_+	ncRNA_intronic
CAediting_394927	chr4_185314234_+	ncRNA_intronic
CAediting_394928	chr4_185314235_+	ncRNA_intronic
CAediting_394929	chr4_185314240_+	ncRNA_intronic
CAediting_394930	chr4_185314255_+	ncRNA_intronic
CAediting_394931	chr4_185314260_+	ncRNA_intronic
CAediting_394932	chr4_185314274_+	ncRNA_intronic
CAediting_394933	chr4_185314286_+	ncRNA_intronic
CAediting_394934	chr4_185314569_+	ncRNA_intronic
CAediting_394935	chr4_185314572_+	ncRNA_intronic
CAediting_394936	chr4_185314573_+	ncRNA_intronic
CAediting_394937	chr4_185314588_+	ncRNA_intronic
CAediting_394938	chr4_185314596_+	ncRNA_intronic
CAediting_394939	chr4_185314613_+	ncRNA_intronic
CAediting_394940	chr4_185314643_+	ncRNA_intronic
CAediting_394941	chr4_185314648_+	ncRNA_intronic
CAediting_394942	chr4_185314653_+	ncRNA_intronic
CAediting_394943	chr4_185314657_+	ncRNA_intronic
CAediting_394944	chr4_185314659_+	ncRNA_intronic
CAediting_394945	chr4_185314671_+	ncRNA_intronic
CAediting_394946	chr4_185314693_+	ncRNA_intronic
CAediting_394947	chr4_185314696_+	ncRNA_intronic
CAediting_394948	chr4_185314697_+	ncRNA_intronic
CAediting_394949	chr4_185314698_+	ncRNA_intronic
CAediting_394950	chr4_185314699_+	ncRNA_intronic
CAediting_394951	chr4_185314700_+	ncRNA_intronic
CAediting_394952	chr4_185314702_+	ncRNA_intronic
CAediting_394953	chr4_185314705_+	ncRNA_intronic
CAediting_394954	chr4_185314706_+	ncRNA_intronic
CAediting_394955	chr4_185314707_+	ncRNA_intronic
CAediting_394956	chr4_185314708_+	ncRNA_intronic
CAediting_394957	chr4_185314711_+	ncRNA_intronic
CAediting_394958	chr4_185314718_+	ncRNA_intronic
CAediting_394959	chr4_185314731_+	ncRNA_intronic
CAediting_394960	chr4_185314737_+	ncRNA_intronic
CAediting_394961	chr4_185314738_+	ncRNA_intronic
CAediting_394962	chr4_185314743_+	ncRNA_intronic
CAediting_394963	chr4_185314747_+	ncRNA_intronic
CAediting_394964	chr4_185314754_+	ncRNA_intronic
CAediting_394965	chr4_185314764_+	ncRNA_intronic
CAediting_394966	chr4_185314766_+	ncRNA_intronic
CAediting_394967	chr4_185314767_+	ncRNA_intronic
CAediting_394968	chr4_185314773_+	ncRNA_intronic
CAediting_394969	chr4_185314778_+	ncRNA_intronic
CAediting_394970	chr4_185314779_+	ncRNA_intronic
CAediting_394971	chr4_185314786_+	ncRNA_intronic
CAediting_394972	chr4_185314793_+	ncRNA_intronic
CAediting_394973	chr4_185314799_+	ncRNA_intronic
CAediting_394974	chr4_185314803_+	ncRNA_intronic
CAediting_394975	chr4_185314808_+	ncRNA_intronic
CAediting_394976	chr4_185314810_+	ncRNA_intronic
CAediting_394977	chr4_185314828_+	ncRNA_intronic
CAediting_394978	chr4_185314840_+	ncRNA_intronic
CAediting_394979	chr4_185314841_+	ncRNA_intronic
CAediting_394980	chr4_185314847_+	ncRNA_intronic
CAediting_394981	chr4_185314973_+	ncRNA_intronic
CAediting_394982	chr4_185314979_+	ncRNA_intronic
CAediting_394983	chr4_185314982_+	ncRNA_intronic
CAediting_394984	chr4_185314990_+	ncRNA_intronic
CAediting_394985	chr4_185315071_+	ncRNA_intronic
CAediting_394986	chr4_185315081_+	ncRNA_intronic
CAediting_394987	chr4_185315107_+	ncRNA_intronic
CAediting_394988	chr4_185315113_+	ncRNA_intronic
CAediting_394989	chr4_185315134_+	ncRNA_intronic
CAediting_394990	chr4_185315137_+	ncRNA_intronic
CAediting_394991	chr4_185315140_+	ncRNA_intronic
CAediting_394992	chr4_185315148_+	ncRNA_intronic
CAediting_394993	chr4_185315149_+	ncRNA_intronic
CAediting_394994	chr4_185315169_+	ncRNA_intronic
CAediting_394995	chr4_185315173_+	ncRNA_intronic
CAediting_394996	chr4_185315178_+	ncRNA_intronic
CAediting_394997	chr4_185315180_+	ncRNA_intronic
CAediting_394998	chr4_185315210_+	ncRNA_intronic
CAediting_394999	chr4_185315216_+	ncRNA_intronic
CAediting_395000	chr4_185315231_+	ncRNA_intronic
CAediting_395001	chr4_185315233_+	ncRNA_intronic
CAediting_395002	chr4_185315234_+	ncRNA_intronic
CAediting_395003	chr4_185315235_+	ncRNA_intronic
CAediting_395004	chr4_185315236_+	ncRNA_intronic
CAediting_395005	chr4_185315239_+	ncRNA_intronic
CAediting_395006	chr4_185315240_+	ncRNA_intronic
CAediting_395007	chr4_185315241_+	ncRNA_intronic
CAediting_395008	chr4_185315243_+	ncRNA_intronic
CAediting_395009	chr4_185315245_+	ncRNA_intronic
CAediting_395010	chr4_185315246_+	ncRNA_intronic
CAediting_395011	chr4_185315344_+	ncRNA_intronic
CAediting_395012	chr4_185315358_+	ncRNA_intronic
CAediting_395013	chr4_185315363_+	ncRNA_intronic
CAediting_395014	chr4_185315368_+	ncRNA_intronic
CAediting_395015	chr4_185315387_+	ncRNA_intronic
CAediting_395016	chr4_185315389_+	ncRNA_intronic
CAediting_395017	chr4_185315393_+	ncRNA_intronic
CAediting_395018	chr4_185315394_+	ncRNA_intronic
CAediting_395019	chr4_185315397_+	ncRNA_intronic
CAediting_395020	chr4_185315411_+	ncRNA_intronic
CAediting_395021	chr4_185315420_+	ncRNA_intronic
CAediting_395022	chr4_185315423_+	ncRNA_intronic
CAediting_395023	chr4_185315429_+	ncRNA_intronic
CAediting_395024	chr4_185315430_+	ncRNA_intronic
CAediting_395025	chr4_185315433_+	ncRNA_intronic
CAediting_395026	chr4_185315435_+	ncRNA_intronic
CAediting_395027	chr4_185315449_+	ncRNA_intronic
CAediting_395028	chr4_185315455_+	ncRNA_intronic
CAediting_395029	chr4_185315460_+	ncRNA_intronic
CAediting_395030	chr4_185315468_+	ncRNA_intronic
CAediting_395031	chr4_185315474_+	ncRNA_intronic
CAediting_395032	chr4_185315477_+	ncRNA_intronic
CAediting_395033	chr4_185315479_+	ncRNA_intronic
CAediting_395034	chr4_185315491_+	ncRNA_intronic
CAediting_395035	chr4_185315494_+	ncRNA_intronic
CAediting_395036	chr4_185315503_+	ncRNA_intronic
CAediting_395037	chr4_185315514_+	ncRNA_intronic
CAediting_395038	chr4_185315515_+	ncRNA_intronic
CAediting_395039	chr4_185315522_+	ncRNA_intronic
CAediting_395040	chr4_185315523_+	ncRNA_intronic
CAediting_395041	chr4_185315528_+	ncRNA_intronic
CAediting_395042	chr4_185315533_+	ncRNA_intronic
CAediting_395043	chr4_185315555_+	ncRNA_intronic
CAediting_395044	chr4_185315556_+	ncRNA_intronic
CAediting_395045	chr4_185315568_+	ncRNA_intronic
CAediting_395046	chr4_185315570_+	ncRNA_intronic
CAediting_395047	chr4_185315574_+	ncRNA_intronic
CAediting_395048	chr4_185315577_+	ncRNA_intronic
CAediting_395049	chr4_185315602_+	ncRNA_intronic
CAediting_395050	chr4_185321472_+	ncRNA_intronic
CAediting_395051	chr4_185321525_+	ncRNA_intronic
CAediting_395052	chr4_185321528_+	ncRNA_intronic
CAediting_395053	chr4_185321537_+	ncRNA_intronic
CAediting_395054	chr4_185334097_+	ncRNA_intronic
CAediting_395055	chr4_185334174_+	ncRNA_intronic
CAediting_395056	chr4_185334177_+	ncRNA_intronic
CAediting_395057	chr4_185335070_+	ncRNA_intronic
CAediting_395058	chr4_185335144_+	ncRNA_intronic
CAediting_395059	chr4_185344009_+	ncRNA_intronic
CAediting_395060	chr4_185344136_+	ncRNA_intronic
CAediting_395061	chr4_185345517_+	ncRNA_intronic
CAediting_395062	chr4_185345626_+	ncRNA_intronic
CAediting_395063	chr4_185345639_+	ncRNA_intronic
CAediting_395064	chr4_185345641_+	ncRNA_intronic
CAediting_395065	chr4_185345670_+	ncRNA_intronic
CAediting_395066	chr4_185345703_+	ncRNA_intronic
CAediting_395067	chr4_185345997_+	ncRNA_intronic
CAediting_395068	chr4_185359215_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_394866	chr4_185214320_+	SINE	Alu	AluJr
CAediting_394867	chr4_185214323_+	SINE	Alu	AluJr
CAediting_394868	chr4_185214325_+	SINE	Alu	AluJr
CAediting_394869	chr4_185214375_+	SINE	Alu	AluJr
CAediting_394870	chr4_185214412_+	SINE	Alu	AluJr
CAediting_394871	chr4_185220585_+	SINE	Alu	AluSc8
CAediting_394872	chr4_185235690_+	SINE	Alu	AluJb
CAediting_394873	chr4_185237942_+	SINE	Alu	AluSx
CAediting_394874	chr4_185243482_+	SINE	Alu	AluJb
CAediting_394875	chr4_185243541_+	SINE	Alu	AluJb
CAediting_394876	chr4_185243552_+	SINE	Alu	AluJb
CAediting_394877	chr4_185246121_+	SINE	Alu	AluSx
CAediting_394878	chr4_185246124_+	SINE	Alu	AluSx
CAediting_394879	chr4_185246128_+	SINE	Alu	AluSx
CAediting_394880	chr4_185246205_+	SINE	Alu	AluSx
CAediting_394881	chr4_185248490_+	SINE	Alu	AluJb
CAediting_394882	chr4_185248491_+	SINE	Alu	AluJb
CAediting_394883	chr4_185248505_+	SINE	Alu	AluJb
CAediting_394884	chr4_185248598_+	SINE	Alu	AluJb
CAediting_394885	chr4_185256677_+	SINE	Alu	AluJb
CAediting_394886	chr4_185269758_+	SINE	Alu	FLAM_A
CAediting_394887	chr4_185269765_+	SINE	Alu	FLAM_A
CAediting_394888	chr4_185269766_+	SINE	Alu	FLAM_A
CAediting_394889	chr4_185269812_+	SINE	Alu	FLAM_A
CAediting_394890	chr4_185279952_+	SINE	Alu	AluJb
CAediting_394891	chr4_185280120_+	SINE	Alu	AluJb
CAediting_394892	chr4_185282261_+	SINE	Alu	AluSq2
CAediting_394893	chr4_185286245_+	SINE	Alu	AluJr4
CAediting_394894	chr4_185286249_+	SINE	Alu	AluJr4
CAediting_394895	chr4_185292421_+	SINE	Alu	AluSq2
CAediting_394896	chr4_185292423_+	SINE	Alu	AluSq2
CAediting_394897	chr4_185303538_+	SINE	Alu	AluY
CAediting_394898	chr4_185303544_+	SINE	Alu	AluY
CAediting_394899	chr4_185303565_+	SINE	Alu	AluY
CAediting_394900	chr4_185303603_+	SINE	Alu	AluY
CAediting_394901	chr4_185304619_+	SINE	Alu	AluSp
CAediting_394902	chr4_185312554_+	SINE	Alu	AluY
CAediting_394903	chr4_185312587_+	SINE	Alu	AluY
CAediting_394904	chr4_185312589_+	SINE	Alu	AluY
CAediting_394905	chr4_185312597_+	SINE	Alu	AluY
CAediting_394906	chr4_185312602_+	SINE	Alu	AluY
CAediting_394907	chr4_185312603_+	SINE	Alu	AluY
CAediting_394908	chr4_185312609_+	SINE	Alu	AluY
CAediting_394909	chr4_185312622_+	SINE	Alu	AluY
CAediting_394910	chr4_185312652_+	SINE	Alu	AluY
CAediting_394911	chr4_185312662_+	SINE	Alu	AluY
CAediting_394912	chr4_185312664_+	SINE	Alu	AluY
CAediting_394913	chr4_185312701_+	SINE	Alu	AluY
CAediting_394914	chr4_185312707_+	SINE	Alu	AluY
CAediting_394915	chr4_185312724_+	SINE	Alu	AluY
CAediting_394916	chr4_185312732_+	SINE	Alu	AluY
CAediting_394917	chr4_185312739_+	SINE	Alu	AluY
CAediting_394918	chr4_185312750_+	SINE	Alu	AluY
CAediting_394919	chr4_185312761_+	SINE	Alu	AluY
CAediting_394920	chr4_185312772_+	SINE	Alu	AluY
CAediting_394921	chr4_185312777_+	SINE	Alu	AluY
CAediting_394922	chr4_185312785_+	SINE	Alu	AluY
CAediting_394923	chr4_185312799_+	SINE	Alu	AluY
CAediting_394924	chr4_185312801_+	SINE	Alu	AluY
CAediting_394925	chr4_185314073_+	DNA	TcMar-Tigger	Tigger2a
CAediting_394926	chr4_185314213_+	SINE	Alu	FLAM_C
CAediting_394927	chr4_185314234_+	SINE	Alu	FLAM_C
CAediting_394928	chr4_185314235_+	SINE	Alu	FLAM_C
CAediting_394929	chr4_185314240_+	SINE	Alu	FLAM_C
CAediting_394930	chr4_185314255_+	SINE	Alu	FLAM_C
CAediting_394931	chr4_185314260_+	SINE	Alu	FLAM_C
CAediting_394932	chr4_185314274_+	SINE	Alu	FLAM_C
CAediting_394933	chr4_185314286_+	SINE	Alu	FLAM_C
CAediting_394934	chr4_185314569_+	LINE	L1	L1M5
CAediting_394935	chr4_185314572_+	LINE	L1	L1M5
CAediting_394936	chr4_185314573_+	LINE	L1	L1M5
CAediting_394937	chr4_185314588_+	SINE	Alu	AluSc
CAediting_394938	chr4_185314596_+	SINE	Alu	AluSc
CAediting_394939	chr4_185314613_+	SINE	Alu	AluSc
CAediting_394940	chr4_185314643_+	SINE	Alu	AluSc
CAediting_394941	chr4_185314648_+	SINE	Alu	AluSc
CAediting_394942	chr4_185314653_+	SINE	Alu	AluSc
CAediting_394943	chr4_185314657_+	SINE	Alu	AluSc
CAediting_394944	chr4_185314659_+	SINE	Alu	AluSc
CAediting_394945	chr4_185314671_+	SINE	Alu	AluSc
CAediting_394946	chr4_185314693_+	SINE	Alu	AluSc
CAediting_394947	chr4_185314696_+	SINE	Alu	AluSc
CAediting_394948	chr4_185314697_+	SINE	Alu	AluSc
CAediting_394949	chr4_185314698_+	SINE	Alu	AluSc
CAediting_394950	chr4_185314699_+	SINE	Alu	AluSc
CAediting_394951	chr4_185314700_+	SINE	Alu	AluSc
CAediting_394952	chr4_185314702_+	SINE	Alu	AluSc
CAediting_394953	chr4_185314705_+	SINE	Alu	AluSc
CAediting_394954	chr4_185314706_+	SINE	Alu	AluSc
CAediting_394955	chr4_185314707_+	SINE	Alu	AluSc
CAediting_394956	chr4_185314708_+	SINE	Alu	AluSc
CAediting_394957	chr4_185314711_+	SINE	Alu	AluSc
CAediting_394958	chr4_185314718_+	SINE	Alu	AluSc
CAediting_394959	chr4_185314731_+	SINE	Alu	AluSc
CAediting_394960	chr4_185314737_+	SINE	Alu	AluSc
CAediting_394961	chr4_185314738_+	SINE	Alu	AluSc
CAediting_394962	chr4_185314743_+	SINE	Alu	AluSc
CAediting_394963	chr4_185314747_+	SINE	Alu	AluSc
CAediting_394964	chr4_185314754_+	SINE	Alu	AluSc
CAediting_394965	chr4_185314764_+	SINE	Alu	AluSc
CAediting_394966	chr4_185314766_+	SINE	Alu	AluSc
CAediting_394967	chr4_185314767_+	SINE	Alu	AluSc
CAediting_394968	chr4_185314773_+	SINE	Alu	AluSc
CAediting_394969	chr4_185314778_+	SINE	Alu	AluSc
CAediting_394970	chr4_185314779_+	SINE	Alu	AluSc
CAediting_394971	chr4_185314786_+	SINE	Alu	AluSc
CAediting_394972	chr4_185314793_+	SINE	Alu	AluSc
CAediting_394973	chr4_185314799_+	SINE	Alu	AluSc
CAediting_394974	chr4_185314803_+	SINE	Alu	AluSc
CAediting_394975	chr4_185314808_+	SINE	Alu	AluSc
CAediting_394976	chr4_185314810_+	SINE	Alu	AluSc
CAediting_394977	chr4_185314828_+	SINE	Alu	AluSc
CAediting_394978	chr4_185314840_+	SINE	Alu	AluSc
CAediting_394979	chr4_185314841_+	SINE	Alu	AluSc
CAediting_394980	chr4_185314847_+	SINE	Alu	AluSc
CAediting_394981	chr4_185314973_+	SINE	Alu	AluY
CAediting_394982	chr4_185314979_+	SINE	Alu	AluY
CAediting_394983	chr4_185314982_+	SINE	Alu	AluY
CAediting_394984	chr4_185314990_+	SINE	Alu	AluY
CAediting_394985	chr4_185315071_+	SINE	Alu	AluY
CAediting_394986	chr4_185315081_+	SINE	Alu	AluY
CAediting_394987	chr4_185315107_+	SINE	Alu	AluY
CAediting_394988	chr4_185315113_+	SINE	Alu	AluY
CAediting_394989	chr4_185315134_+	SINE	Alu	AluY
CAediting_394990	chr4_185315137_+	SINE	Alu	AluY
CAediting_394991	chr4_185315140_+	SINE	Alu	AluY
CAediting_394992	chr4_185315148_+	SINE	Alu	AluY
CAediting_394993	chr4_185315149_+	SINE	Alu	AluY
CAediting_394994	chr4_185315169_+	SINE	Alu	AluY
CAediting_394995	chr4_185315173_+	SINE	Alu	AluY
CAediting_394996	chr4_185315178_+	SINE	Alu	AluY
CAediting_394997	chr4_185315180_+	SINE	Alu	AluY
CAediting_394998	chr4_185315210_+	SINE	Alu	AluY
CAediting_394999	chr4_185315216_+	SINE	Alu	AluY
CAediting_395000	chr4_185315231_+	SINE	Alu	AluY
CAediting_395001	chr4_185315233_+	SINE	Alu	AluY
CAediting_395002	chr4_185315234_+	SINE	Alu	AluY
CAediting_395003	chr4_185315235_+	SINE	Alu	AluY
CAediting_395004	chr4_185315236_+	SINE	Alu	AluY
CAediting_395005	chr4_185315239_+	SINE	Alu	AluY
CAediting_395006	chr4_185315240_+	SINE	Alu	AluY
CAediting_395007	chr4_185315241_+	SINE	Alu	AluY
CAediting_395008	chr4_185315243_+	SINE	Alu	AluY
CAediting_395009	chr4_185315245_+	SINE	Alu	AluY
CAediting_395010	chr4_185315246_+	SINE	Alu	AluY
CAediting_395011	chr4_185315344_+	SINE	Alu	AluSx
CAediting_395012	chr4_185315358_+	SINE	Alu	AluSx
CAediting_395013	chr4_185315363_+	SINE	Alu	AluSx
CAediting_395014	chr4_185315368_+	SINE	Alu	AluSx
CAediting_395015	chr4_185315387_+	SINE	Alu	AluSx
CAediting_395016	chr4_185315389_+	SINE	Alu	AluSx
CAediting_395017	chr4_185315393_+	SINE	Alu	AluSx
CAediting_395018	chr4_185315394_+	SINE	Alu	AluSx
CAediting_395019	chr4_185315397_+	SINE	Alu	AluSx
CAediting_395020	chr4_185315411_+	SINE	Alu	AluSx
CAediting_395021	chr4_185315420_+	SINE	Alu	AluSx
CAediting_395022	chr4_185315423_+	SINE	Alu	AluSx
CAediting_395023	chr4_185315429_+	SINE	Alu	AluSx
CAediting_395024	chr4_185315430_+	SINE	Alu	AluSx
CAediting_395025	chr4_185315433_+	SINE	Alu	AluSx
CAediting_395026	chr4_185315435_+	SINE	Alu	AluSx
CAediting_395027	chr4_185315449_+	SINE	Alu	AluSx
CAediting_395028	chr4_185315455_+	SINE	Alu	AluSx
CAediting_395029	chr4_185315460_+	SINE	Alu	AluSx
CAediting_395030	chr4_185315468_+	SINE	Alu	AluSx
CAediting_395031	chr4_185315474_+	SINE	Alu	AluSx
CAediting_395032	chr4_185315477_+	SINE	Alu	AluSx
CAediting_395033	chr4_185315479_+	SINE	Alu	AluSx
CAediting_395034	chr4_185315491_+	SINE	Alu	AluSx
CAediting_395035	chr4_185315494_+	SINE	Alu	AluSx
CAediting_395036	chr4_185315503_+	SINE	Alu	AluSx
CAediting_395037	chr4_185315514_+	SINE	Alu	AluSx
CAediting_395038	chr4_185315515_+	SINE	Alu	AluSx
CAediting_395039	chr4_185315522_+	SINE	Alu	AluSx
CAediting_395040	chr4_185315523_+	SINE	Alu	AluSx
CAediting_395041	chr4_185315528_+	SINE	Alu	AluSx
CAediting_395042	chr4_185315533_+	SINE	Alu	AluSx
CAediting_395043	chr4_185315555_+	SINE	Alu	AluSx
CAediting_395044	chr4_185315556_+	SINE	Alu	AluSx
CAediting_395045	chr4_185315568_+	SINE	Alu	AluSx
CAediting_395046	chr4_185315570_+	SINE	Alu	AluSx
CAediting_395047	chr4_185315574_+	SINE	Alu	AluSx
CAediting_395048	chr4_185315577_+	SINE	Alu	AluSx
CAediting_395049	chr4_185315602_+	LINE	L1	L1M5
CAediting_395050	chr4_185321472_+	SINE	Alu	AluSx
CAediting_395051	chr4_185321525_+	SINE	Alu	AluSx
CAediting_395052	chr4_185321528_+	SINE	Alu	AluSx
CAediting_395053	chr4_185321537_+	SINE	Alu	AluSx
CAediting_395054	chr4_185334097_+	SINE	Alu	AluSz
CAediting_395055	chr4_185334174_+	SINE	Alu	AluSz
CAediting_395056	chr4_185334177_+	SINE	Alu	AluSz
CAediting_395057	chr4_185335070_+	SINE	Alu	AluSx1
CAediting_395058	chr4_185335144_+	SINE	Alu	AluSx1
CAediting_395059	chr4_185344009_+	SINE	Alu	AluSz
CAediting_395060	chr4_185344136_+	SINE	Alu	AluSz
CAediting_395061	chr4_185345517_+	SINE	Alu	AluJr
CAediting_395062	chr4_185345626_+	SINE	Alu	AluJr
CAediting_395063	chr4_185345639_+	SINE	Alu	AluJr
CAediting_395064	chr4_185345641_+	SINE	Alu	AluJr
CAediting_395065	chr4_185345670_+	SINE	Alu	AluJr
CAediting_395066	chr4_185345703_+	SINE	Alu	AluJr
CAediting_395067	chr4_185345997_+	SINE	Alu	AluSx
CAediting_395068	chr4_185359215_+	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for SNX25

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000109762.14.SNX25.

Correlation between RNA A-to-I editing and PSI for ENSG00000109762.14.SNX25.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SNX25

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

LUAD.CAediting_394960.ENSG00000109762.SNX25.png
Soverview

SKCM.CAediting_394960.ENSG00000109762.SNX25.png
Soverview

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Protein coding region RNA A-to-I editings for SNX25

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SNX25

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846604	chr11_93733708_-	ENSG00000109762.14	ENST00000504959	hsa-miR-1304-3p	185342079	185342085	7mer-m8	185342066	185342086	156	-22.34
CAediting_748296	chr10_51299626_+	ENSG00000109762.14	ENST00000504959	hsa-miR-605-3p	185357698	185357704	7mer-m8	185357685	185357705	149	-14.5
CAediting_396018	chr5_1062918_-	ENSG00000109762.14	ENST00000504959	hsa-miR-4635	185351515	185351521	7mer-m8	185351503	185351522	146	-16.31

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1160181	chr17_7017644_-	ENSG00000109762.14	ENST00000618785	hsa-miR-195-3p	185363785	185363791	7mer-m8	185363771	185363792	144	-5.8
CAediting_1160181	chr17_7017644_-	ENSG00000109762.14	ENST00000504273	hsa-miR-195-3p	185363785	185363791	7mer-m8	185363771	185363792	144	-5.8
CAediting_846604	chr11_93733708_-	ENSG00000109762.14	ENST00000504959	hsa-miR-1304-3p	185342109	185342115	7mer-m8	185342096	185342115	145	-14.91

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SNX25

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SNX25

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
THCA	CAediting_394937	chr4_185314588_+	0.0078875779416368	0.317331315277829	.	.	.	.
THCA	CAediting_394960	chr4_185314737_+	0.0238336033913035	0.188270281009565	.	.	.	.
THCA	CAediting_394962	chr4_185314743_+	0.00149102461885815	0.319822495251551	.	.	.	.
THCA	CAediting_394966	chr4_185314766_+	0.0207968638655986	0.295448108139846	.	.	.	.
THCA	CAediting_394967	chr4_185314767_+	0.0346422195311081	0.220540810083432	.	.	.	.
THCA	CAediting_394968	chr4_185314773_+	0.000241806310540356	0.446798706019986	.	.	.	.
STAD	CAediting_394972	chr4_185314793_+	.	.	.	.	0.00644315986607051	0.318242142478515
THCA	CAediting_394981	chr4_185314973_+	0.00594017465728797	0.305012984141795	.	.	.	.
THCA	CAediting_394995	chr4_185315173_+	0.00330998883389882	0.30810492600141	.	.	.	.
THCA	CAediting_394996	chr4_185315178_+	0.00401315433319043	0.250718722710612	.	.	.	.
THCA	CAediting_395004	chr4_185315236_+	0.02213814664687	0.179135634909143	.	.	0.0134896784426318	0.193170641607857
THCA	CAediting_395019	chr4_185315397_+	0.0179896409945362	0.272566412336459	.	.	.	.
THCA	CAediting_395037	chr4_185315514_+	0.0150145563893351	0.242607798238265	.	.	.	.
PRAD	CAediting_395043	chr4_185315555_+	0.0257312475190535	0.276573925804138	.	.	.	.
THCA	CAediting_395043	chr4_185315555_+	0.0071047392860386	0.170886290179599	.	.	.	.
SKCM	CAediting_395043	chr4_185315555_+	0.000127609837230871	0.439128478152675	.	.	.	.
SKCM	CAediting_395044	chr4_185315556_+	0.0158434220958682	0.291576968888451	.	.	.	.
BRCA	CAediting_395045	chr4_185315568_+	0.00126257134236748	0.377796710021871	.	.	.	.
PRAD	CAediting_395045	chr4_185315568_+	0.000585214133207526	0.448992839116262	.	.	.	.
THCA	CAediting_395045	chr4_185315568_+	6.50995775490311e-06	0.279746558108978	.	.	.	.
SKCM	CAediting_395045	chr4_185315568_+	0.00507549936245589	0.360190187462383	.	.	.	.
BRCA	CAediting_395047	chr4_185315574_+	0.0208155093010945	0.253387048422389	.	.	.	.
LUAD	CAediting_395047	chr4_185315574_+	0.000449588978730058	0.353036042953766	.	.	.	.
THCA	CAediting_395047	chr4_185315574_+	4.51188114865642e-06	0.275484446318634	.	.	.	.
SKCM	CAediting_395047	chr4_185315574_+	0.000144880697597262	0.407494705094839	.	.	.	.

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Relation with cancer stages for SNX25

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_395045	chr4_185315568_+	0.031611295668553	-0.259042485657003
THCA	pathologic_stage	CAediting_394960	chr4_185314737_+	0.0466242601544547	0.166683897388913
THCA	pathologic_stage	CAediting_394994	chr4_185315169_+	0.0310284711399187	0.226271345078592
THCA	pathologic_stage	CAediting_395004	chr4_185315236_+	0.0212020283231474	0.181512625851889
THCA	pathologic_stage	CAediting_395037	chr4_185315514_+	0.00828754426381619	0.265299853268201
THCA	pathologic_stage	CAediting_395047	chr4_185315574_+	0.013415264013165	0.151724482807294

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Relation with survival for SNX25

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SNX25

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SNX25

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene