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Editing gene: FAM107B (CAeditome ID:83641)

Gene summary for FAM107B

Gene summary

Gene information	Gene symbol	FAM107B
	Gene ID	83641
	Gene name	family with sequence similarity 107 member B
	Synonyms	C10orf45\|HITS
	Cytomap	10p13
	Type of gene	protein-coding
	Description	protein FAM107BFAM107B/CDNF fusionheat shock-inducible tumor small protein
	Modification date	20210518
	UniProtAcc	Q9H098
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for FAM107B

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000065809.12

RNA A-to-I editing events in Cancer.

CAediting_730959(14527109, -), CAediting_730960(14527110, -), CAediting_730961(14528212, -), CAediting_730962(14528319, -), CAediting_730963(14528409, -), CAediting_730964(14528428, -), CAediting_730965(14528432, -), CAediting_730966(14531796, -), CAediting_730967(14532684, -), CAediting_730968(14532726, -), CAediting_730969(14533990, -), CAediting_730970(14533997, -), CAediting_730971(14551246, -), CAediting_730972(14551320, -), CAediting_730973(14551395, -), CAediting_730974(14551424, -), CAediting_730975(14552593, -), CAediting_730976(14552619, -), CAediting_730977(14552668, -), CAediting_730978(14552671, -), CAediting_730979(14552746, -), CAediting_730980(14552774, -), CAediting_730981(14559662, -), CAediting_730982(14559685, -), CAediting_730983(14561847, -), CAediting_730984(14561853, -), CAediting_730985(14561858, -), CAediting_730986(14561913, -), CAediting_730987(14561923, -), CAediting_730988(14567031, -), CAediting_730989(14567147, -), CAediting_730990(14575300, -), CAediting_730991(14575301, -), CAediting_730992(14575328, -), CAediting_730993(14575382, -), CAediting_730994(14575426, -), CAediting_730995(14575475, -), CAediting_730996(14576322, -), CAediting_730997(14576432, -), CAediting_730998(14576443, -), CAediting_730999(14581641, -), CAediting_731000(14581682, -), CAediting_731001(14581732, -), CAediting_731002(14581808, -), CAediting_731003(14581872, -), CAediting_731004(14581886, -), CAediting_731005(14582429, -), CAediting_731006(14582434, -), CAediting_731007(14582444, -), CAediting_731008(14582446, -), CAediting_731009(14582449, -), CAediting_731010(14582466, -), CAediting_731011(14582469, -), CAediting_731012(14582473, -), CAediting_731013(14582474, -), CAediting_731014(14582482, -), CAediting_731015(14582488, -), CAediting_731016(14582492, -), CAediting_731017(14582498, -), CAediting_731018(14582505, -), CAediting_731019(14582509, -), CAediting_731020(14582515, -), CAediting_731021(14582542, -), CAediting_731022(14582546, -), CAediting_731023(14582549, -), CAediting_731024(14582552, -), CAediting_731025(14582554, -), CAediting_731026(14582555, -), CAediting_731027(14582556, -), CAediting_731028(14582557, -), CAediting_731029(14582561, -), CAediting_731030(14582572, -), CAediting_731031(14582582, -), CAediting_731032(14582649, -), CAediting_731033(14582658, -), CAediting_731034(14582820, -), CAediting_731035(14582929, -), CAediting_731036(14582938, -), CAediting_731037(14583000, -), CAediting_731038(14583003, -), CAediting_731039(14583004, -), CAediting_731040(14583018, -), CAediting_731041(14589100, -), CAediting_731042(14590926, -), CAediting_731043(14593642, -), CAediting_731044(14594289, -), CAediting_731045(14594388, -), CAediting_731046(14594409, -), CAediting_731047(14594422, -), CAediting_731048(14594471, -), CAediting_731049(14595483, -), CAediting_731050(14595518, -), CAediting_731051(14595522, -), CAediting_731052(14595523, -), CAediting_731053(14595531, -), CAediting_731054(14595537, -), CAediting_731055(14595547, -), CAediting_731056(14595554, -), CAediting_731057(14595572, -), CAediting_731058(14595586, -), CAediting_731059(14595590, -), CAediting_731060(14595593, -), CAediting_731061(14595594, -), CAediting_731062(14595603, -), CAediting_731063(14595604, -), CAediting_731064(14595605, -), CAediting_731065(14595625, -), CAediting_731066(14595629, -), CAediting_731067(14597781, -), CAediting_731068(14597868, -), CAediting_731069(14597936, -), CAediting_731070(14599637, -), CAediting_731071(14600754, -), CAediting_731072(14600966, -), CAediting_731073(14600980, -), CAediting_731074(14600994, -), CAediting_731075(14601056, -), CAediting_731076(14674899, -),

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RNA editing positional annotations for FAM107B using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_730959	chr10_14527109_-	ncRNA_intronic
CAediting_730960	chr10_14527110_-	ncRNA_intronic
CAediting_730961	chr10_14528212_-	ncRNA_intronic
CAediting_730962	chr10_14528319_-	ncRNA_intronic
CAediting_730963	chr10_14528409_-	ncRNA_intronic
CAediting_730964	chr10_14528428_-	ncRNA_intronic
CAediting_730965	chr10_14528432_-	ncRNA_intronic
CAediting_730966	chr10_14531796_-	ncRNA_intronic
CAediting_730967	chr10_14532684_-	ncRNA_intronic
CAediting_730968	chr10_14532726_-	ncRNA_intronic
CAediting_730969	chr10_14533990_-	ncRNA_intronic
CAediting_730970	chr10_14533997_-	ncRNA_intronic
CAediting_730971	chr10_14551246_-	ncRNA_intronic
CAediting_730972	chr10_14551320_-	ncRNA_intronic
CAediting_730973	chr10_14551395_-	ncRNA_intronic
CAediting_730974	chr10_14551424_-	ncRNA_intronic
CAediting_730975	chr10_14552593_-	ncRNA_intronic
CAediting_730976	chr10_14552619_-	ncRNA_intronic
CAediting_730977	chr10_14552668_-	ncRNA_intronic
CAediting_730978	chr10_14552671_-	ncRNA_intronic
CAediting_730979	chr10_14552746_-	ncRNA_intronic
CAediting_730980	chr10_14552774_-	ncRNA_intronic
CAediting_730981	chr10_14559662_-	ncRNA_intronic
CAediting_730982	chr10_14559685_-	ncRNA_intronic
CAediting_730983	chr10_14561847_-	ncRNA_intronic
CAediting_730984	chr10_14561853_-	ncRNA_intronic
CAediting_730985	chr10_14561858_-	ncRNA_intronic
CAediting_730986	chr10_14561913_-	ncRNA_intronic
CAediting_730987	chr10_14561923_-	ncRNA_intronic
CAediting_730988	chr10_14567031_-	ncRNA_intronic
CAediting_730989	chr10_14567147_-	ncRNA_intronic
CAediting_730990	chr10_14575300_-	ncRNA_intronic
CAediting_730991	chr10_14575301_-	ncRNA_intronic
CAediting_730992	chr10_14575328_-	ncRNA_intronic
CAediting_730993	chr10_14575382_-	ncRNA_intronic
CAediting_730994	chr10_14575426_-	ncRNA_intronic
CAediting_730995	chr10_14575475_-	ncRNA_intronic
CAediting_730996	chr10_14576322_-	ncRNA_intronic
CAediting_730997	chr10_14576432_-	ncRNA_intronic
CAediting_730998	chr10_14576443_-	ncRNA_intronic
CAediting_730999	chr10_14581641_-	ncRNA_intronic
CAediting_731000	chr10_14581682_-	ncRNA_intronic
CAediting_731001	chr10_14581732_-	ncRNA_intronic
CAediting_731002	chr10_14581808_-	ncRNA_intronic
CAediting_731003	chr10_14581872_-	ncRNA_intronic
CAediting_731004	chr10_14581886_-	ncRNA_intronic
CAediting_731005	chr10_14582429_-	ncRNA_intronic
CAediting_731006	chr10_14582434_-	ncRNA_intronic
CAediting_731007	chr10_14582444_-	ncRNA_intronic
CAediting_731008	chr10_14582446_-	ncRNA_intronic
CAediting_731009	chr10_14582449_-	ncRNA_intronic
CAediting_731010	chr10_14582466_-	ncRNA_intronic
CAediting_731011	chr10_14582469_-	ncRNA_intronic
CAediting_731012	chr10_14582473_-	ncRNA_intronic
CAediting_731013	chr10_14582474_-	ncRNA_intronic
CAediting_731014	chr10_14582482_-	ncRNA_intronic
CAediting_731015	chr10_14582488_-	ncRNA_intronic
CAediting_731016	chr10_14582492_-	ncRNA_intronic
CAediting_731017	chr10_14582498_-	ncRNA_intronic
CAediting_731018	chr10_14582505_-	ncRNA_intronic
CAediting_731019	chr10_14582509_-	ncRNA_intronic
CAediting_731020	chr10_14582515_-	ncRNA_intronic
CAediting_731021	chr10_14582542_-	ncRNA_intronic
CAediting_731022	chr10_14582546_-	ncRNA_intronic
CAediting_731023	chr10_14582549_-	ncRNA_intronic
CAediting_731024	chr10_14582552_-	ncRNA_intronic
CAediting_731025	chr10_14582554_-	ncRNA_intronic
CAediting_731026	chr10_14582555_-	ncRNA_intronic
CAediting_731027	chr10_14582556_-	ncRNA_intronic
CAediting_731028	chr10_14582557_-	ncRNA_intronic
CAediting_731029	chr10_14582561_-	ncRNA_intronic
CAediting_731030	chr10_14582572_-	ncRNA_intronic
CAediting_731031	chr10_14582582_-	ncRNA_intronic
CAediting_731032	chr10_14582649_-	ncRNA_intronic
CAediting_731033	chr10_14582658_-	ncRNA_intronic
CAediting_731034	chr10_14582820_-	ncRNA_intronic
CAediting_731035	chr10_14582929_-	ncRNA_intronic
CAediting_731036	chr10_14582938_-	ncRNA_intronic
CAediting_731037	chr10_14583000_-	ncRNA_intronic
CAediting_731038	chr10_14583003_-	ncRNA_intronic
CAediting_731039	chr10_14583004_-	ncRNA_intronic
CAediting_731040	chr10_14583018_-	ncRNA_intronic
CAediting_731041	chr10_14589100_-	ncRNA_intronic
CAediting_731042	chr10_14590926_-	ncRNA_intronic
CAediting_731043	chr10_14593642_-	ncRNA_intronic
CAediting_731044	chr10_14594289_-	ncRNA_intronic
CAediting_731045	chr10_14594388_-	ncRNA_intronic
CAediting_731046	chr10_14594409_-	ncRNA_intronic
CAediting_731047	chr10_14594422_-	ncRNA_intronic
CAediting_731048	chr10_14594471_-	ncRNA_intronic
CAediting_731049	chr10_14595483_-	ncRNA_intronic
CAediting_731050	chr10_14595518_-	ncRNA_intronic
CAediting_731051	chr10_14595522_-	ncRNA_intronic
CAediting_731052	chr10_14595523_-	ncRNA_intronic
CAediting_731053	chr10_14595531_-	ncRNA_intronic
CAediting_731054	chr10_14595537_-	ncRNA_intronic
CAediting_731055	chr10_14595547_-	ncRNA_intronic
CAediting_731056	chr10_14595554_-	ncRNA_intronic
CAediting_731057	chr10_14595572_-	ncRNA_intronic
CAediting_731058	chr10_14595586_-	ncRNA_intronic
CAediting_731059	chr10_14595590_-	ncRNA_intronic
CAediting_731060	chr10_14595593_-	ncRNA_intronic
CAediting_731061	chr10_14595594_-	ncRNA_intronic
CAediting_731062	chr10_14595603_-	ncRNA_intronic
CAediting_731063	chr10_14595604_-	ncRNA_intronic
CAediting_731064	chr10_14595605_-	ncRNA_intronic
CAediting_731065	chr10_14595625_-	ncRNA_intronic
CAediting_731066	chr10_14595629_-	ncRNA_intronic
CAediting_731067	chr10_14597781_-	ncRNA_intronic
CAediting_731068	chr10_14597868_-	ncRNA_intronic
CAediting_731069	chr10_14597936_-	ncRNA_intronic
CAediting_731070	chr10_14599637_-	ncRNA_intronic
CAediting_731071	chr10_14600754_-	ncRNA_intronic
CAediting_731072	chr10_14600966_-	ncRNA_intronic
CAediting_731073	chr10_14600980_-	ncRNA_intronic
CAediting_731074	chr10_14600994_-	ncRNA_intronic
CAediting_731075	chr10_14601056_-	ncRNA_intronic
CAediting_731076	chr10_14674899_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_730959	chr10_14527109_-	SINE	Alu	AluY
CAediting_730960	chr10_14527110_-	SINE	Alu	AluY
CAediting_730961	chr10_14528212_-	SINE	Alu	AluSx
CAediting_730962	chr10_14528319_-	SINE	Alu	AluSx
CAediting_730963	chr10_14528409_-	SINE	Alu	AluSx
CAediting_730964	chr10_14528428_-	SINE	Alu	AluSx
CAediting_730965	chr10_14528432_-	SINE	Alu	AluSx
CAediting_730966	chr10_14531796_-	SINE	Alu	AluSx1
CAediting_730971	chr10_14551246_-	SINE	Alu	AluSx1
CAediting_730972	chr10_14551320_-	SINE	Alu	AluSx1
CAediting_730973	chr10_14551395_-	SINE	Alu	AluSx1
CAediting_730974	chr10_14551424_-	SINE	Alu	AluSx1
CAediting_730975	chr10_14552593_-	SINE	Alu	AluSz6
CAediting_730976	chr10_14552619_-	SINE	Alu	AluSz6
CAediting_730977	chr10_14552668_-	SINE	Alu	AluSz6
CAediting_730978	chr10_14552671_-	SINE	Alu	AluSz6
CAediting_730979	chr10_14552746_-	SINE	Alu	AluSz6
CAediting_730980	chr10_14552774_-	SINE	Alu	AluSz6
CAediting_730981	chr10_14559662_-	SINE	Alu	AluYc3
CAediting_730982	chr10_14559685_-	SINE	Alu	AluYc3
CAediting_730983	chr10_14561847_-	SINE	Alu	AluSz
CAediting_730984	chr10_14561853_-	SINE	Alu	AluSz
CAediting_730985	chr10_14561858_-	SINE	Alu	AluSz
CAediting_730986	chr10_14561913_-	SINE	Alu	AluSz
CAediting_730987	chr10_14561923_-	SINE	Alu	AluSz
CAediting_730988	chr10_14567031_-	SINE	Alu	AluY
CAediting_730989	chr10_14567147_-	SINE	Alu	AluY
CAediting_730990	chr10_14575300_-	SINE	Alu	AluSz
CAediting_730991	chr10_14575301_-	SINE	Alu	AluSz
CAediting_730992	chr10_14575328_-	SINE	Alu	AluSz
CAediting_730993	chr10_14575382_-	SINE	Alu	AluSz
CAediting_730994	chr10_14575426_-	SINE	Alu	AluSz
CAediting_730995	chr10_14575475_-	SINE	Alu	AluSz
CAediting_730996	chr10_14576322_-	SINE	Alu	AluSg
CAediting_730997	chr10_14576432_-	SINE	Alu	AluSg
CAediting_730998	chr10_14576443_-	SINE	Alu	AluSg
CAediting_730999	chr10_14581641_-	SINE	Alu	AluJr
CAediting_731000	chr10_14581682_-	SINE	Alu	AluJr
CAediting_731001	chr10_14581732_-	SINE	Alu	AluJr
CAediting_731002	chr10_14581808_-	SINE	Alu	AluJr
CAediting_731003	chr10_14581872_-	SINE	Alu	AluJr
CAediting_731004	chr10_14581886_-	SINE	Alu	AluJr
CAediting_731005	chr10_14582429_-	SINE	Alu	AluSc8
CAediting_731006	chr10_14582434_-	SINE	Alu	AluSc8
CAediting_731007	chr10_14582444_-	SINE	Alu	AluSc8
CAediting_731008	chr10_14582446_-	SINE	Alu	AluSc8
CAediting_731009	chr10_14582449_-	SINE	Alu	AluSc8
CAediting_731010	chr10_14582466_-	SINE	Alu	AluSc8
CAediting_731011	chr10_14582469_-	SINE	Alu	AluSc8
CAediting_731012	chr10_14582473_-	SINE	Alu	AluSc8
CAediting_731013	chr10_14582474_-	SINE	Alu	AluSc8
CAediting_731014	chr10_14582482_-	SINE	Alu	AluSc8
CAediting_731015	chr10_14582488_-	SINE	Alu	AluSc8
CAediting_731016	chr10_14582492_-	SINE	Alu	AluSc8
CAediting_731017	chr10_14582498_-	SINE	Alu	AluSc8
CAediting_731018	chr10_14582505_-	SINE	Alu	AluSc8
CAediting_731019	chr10_14582509_-	SINE	Alu	AluSc8
CAediting_731020	chr10_14582515_-	SINE	Alu	AluSc8
CAediting_731021	chr10_14582542_-	SINE	Alu	AluSc8
CAediting_731022	chr10_14582546_-	SINE	Alu	AluSc8
CAediting_731023	chr10_14582549_-	SINE	Alu	AluSc8
CAediting_731024	chr10_14582552_-	SINE	Alu	AluSc8
CAediting_731025	chr10_14582554_-	SINE	Alu	AluSc8
CAediting_731026	chr10_14582555_-	SINE	Alu	AluSc8
CAediting_731027	chr10_14582556_-	SINE	Alu	AluSc8
CAediting_731028	chr10_14582557_-	SINE	Alu	AluSc8
CAediting_731029	chr10_14582561_-	SINE	Alu	AluSc8
CAediting_731030	chr10_14582572_-	SINE	Alu	AluSc8
CAediting_731031	chr10_14582582_-	SINE	Alu	AluSc8
CAediting_731032	chr10_14582649_-	SINE	Alu	AluSc8
CAediting_731033	chr10_14582658_-	SINE	Alu	AluSc8
CAediting_731034	chr10_14582820_-	SINE	Alu	AluSx
CAediting_731035	chr10_14582929_-	SINE	Alu	AluSx
CAediting_731036	chr10_14582938_-	SINE	Alu	AluSx
CAediting_731037	chr10_14583000_-	SINE	Alu	AluSx
CAediting_731038	chr10_14583003_-	SINE	Alu	AluSx
CAediting_731039	chr10_14583004_-	SINE	Alu	AluSx
CAediting_731040	chr10_14583018_-	SINE	Alu	AluSx
CAediting_731041	chr10_14589100_-	SINE	Alu	AluSz
CAediting_731042	chr10_14590926_-	SINE	Alu	AluSp
CAediting_731043	chr10_14593642_-	SINE	Alu	AluSx1
CAediting_731044	chr10_14594289_-	SINE	Alu	AluJr
CAediting_731045	chr10_14594388_-	SINE	Alu	AluJr
CAediting_731046	chr10_14594409_-	SINE	Alu	AluJr
CAediting_731047	chr10_14594422_-	SINE	Alu	AluJr
CAediting_731048	chr10_14594471_-	SINE	Alu	AluJr
CAediting_731049	chr10_14595483_-	SINE	Alu	AluSx
CAediting_731050	chr10_14595518_-	SINE	Alu	AluSx
CAediting_731051	chr10_14595522_-	SINE	Alu	AluSx
CAediting_731052	chr10_14595523_-	SINE	Alu	AluSx
CAediting_731053	chr10_14595531_-	SINE	Alu	AluSx
CAediting_731054	chr10_14595537_-	SINE	Alu	AluSx
CAediting_731055	chr10_14595547_-	SINE	Alu	AluSx
CAediting_731056	chr10_14595554_-	SINE	Alu	AluSx
CAediting_731057	chr10_14595572_-	SINE	Alu	AluSx
CAediting_731058	chr10_14595586_-	SINE	Alu	AluSx
CAediting_731059	chr10_14595590_-	SINE	Alu	AluSx
CAediting_731060	chr10_14595593_-	SINE	Alu	AluSx
CAediting_731061	chr10_14595594_-	SINE	Alu	AluSx
CAediting_731062	chr10_14595603_-	SINE	Alu	AluSx
CAediting_731063	chr10_14595604_-	SINE	Alu	AluSx
CAediting_731064	chr10_14595605_-	SINE	Alu	AluSx
CAediting_731065	chr10_14595625_-	SINE	Alu	AluSx
CAediting_731066	chr10_14595629_-	SINE	Alu	AluSx
CAediting_731067	chr10_14597781_-	SINE	Alu	AluSz
CAediting_731068	chr10_14597868_-	SINE	Alu	AluSz
CAediting_731069	chr10_14597936_-	SINE	Alu	AluSz
CAediting_731070	chr10_14599637_-	SINE	Alu	AluJo
CAediting_731071	chr10_14600754_-	SINE	Alu	AluJr
CAediting_731072	chr10_14600966_-	SINE	Alu	AluJr
CAediting_731073	chr10_14600980_-	SINE	Alu	AluJr
CAediting_731074	chr10_14600994_-	SINE	Alu	AluJr
CAediting_731075	chr10_14601056_-	SINE	Alu	AluJr
CAediting_731076	chr10_14674899_-	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for FAM107B

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_731065	chr10_14595625_-	14595617:14595625	5SS	3+0i	AGGTGAAAC	-11.7	GGGTGAAAC	-13.52
MEX_2	CAediting_731065	chr10_14595625_-	14595617:14595625	5SS	3+0i	AGGTGAAAC	-11.7	GGGTGAAAC	-13.52
MEX_1	CAediting_731065	chr10_14595625_-	14595617:14595625	5SS	3+0i	AGGTGAAAC	-11.7	GGGTGAAAC	-13.52

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000065809.12.FAM107B.

Correlation between RNA A-to-I editing and PSI for ENSG00000065809.12.FAM107B.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for FAM107B

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

STAD.CAediting_731025.ENSG00000065809.FAM107B.png
Soverview

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Protein coding region RNA A-to-I editings for FAM107B

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for FAM107B

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_442554	chr5_154685830_+	ENSG00000065809.12	ENST00000378470	hsa-miR-1303	14520303	14520309	7mer-m8	14520302	14520323	141	-13.9
CAediting_442554	chr5_154685830_+	ENSG00000065809.12	ENST00000622567	hsa-miR-1303	14520303	14520309	7mer-m8	14520302	14520323	141	-13.9
CAediting_442554	chr5_154685830_+	ENSG00000065809.12	ENST00000468747	hsa-miR-1303	14520303	14520309	7mer-m8	14520302	14520323	141	-13.9
CAediting_442554	chr5_154685830_+	ENSG00000065809.12	ENST00000378467	hsa-miR-1303	14520303	14520309	7mer-m8	14520302	14520323	141	-13.9
CAediting_442554	chr5_154685830_+	ENSG00000065809.12	ENST00000487335	hsa-miR-1303	14520303	14520309	7mer-m8	14520302	14520323	141	-13.9

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229413	chr17_67471544_+	ENSG00000065809.12	ENST00000378470	hsa-miR-548aa	14518834	14518840	7mer-m8	14518833	14518857	145	-8.93
CAediting_1229413	chr17_67471544_+	ENSG00000065809.12	ENST00000378470	hsa-miR-548aa	14518687	14518693	7mer-m8	14518686	14518712	149	-11.14
CAediting_1229413	chr17_67471544_+	ENSG00000065809.12	ENST00000378470	hsa-miR-548aa	14520855	14520861	7mer-m8	14520854	14520876	144	-9.83
CAediting_1229413	chr17_67471544_+	ENSG00000065809.12	ENST00000622567	hsa-miR-548aa	14518834	14518840	7mer-m8	14518833	14518857	145	-8.93
CAediting_1229413	chr17_67471544_+	ENSG00000065809.12	ENST00000622567	hsa-miR-548aa	14518687	14518693	7mer-m8	14518686	14518712	149	-11.14
CAediting_1229413	chr17_67471544_+	ENSG00000065809.12	ENST00000622567	hsa-miR-548aa	14520855	14520861	7mer-m8	14520854	14520876	144	-9.83
CAediting_1229413	chr17_67471544_+	ENSG00000065809.12	ENST00000468747	hsa-miR-548aa	14520855	14520861	7mer-m8	14520854	14520876	144	-9.83
CAediting_1229413	chr17_67471544_+	ENSG00000065809.12	ENST00000378467	hsa-miR-548aa	14520855	14520861	7mer-m8	14520854	14520876	144	-9.83
CAediting_1229413	chr17_67471544_+	ENSG00000065809.12	ENST00000487335	hsa-miR-548aa	14520855	14520861	7mer-m8	14520854	14520876	144	-9.83
CAediting_1229413	chr17_67471544_+	ENSG00000065809.12	ENST00000378465	hsa-miR-548aa	14520855	14520861	7mer-m8	14520854	14520876	144	-9.83
CAediting_1229413	chr17_67471544_+	ENSG00000065809.12	ENST00000378458	hsa-miR-548aa	14520855	14520861	7mer-m8	14520854	14520876	144	-9.83

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for FAM107B

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for FAM107B

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for FAM107B

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for FAM107B

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for FAM107B

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for FAM107B

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene