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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: INO80B (CAeditome ID:83444) |
Gene summary for INO80B |
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Gene information | Gene symbol | INO80B | Gene ID | 83444 |
Gene name | INO80 complex subunit B | |
Synonyms | HMGA1L4|HMGIYL4|IES2|PAP-1BP|PAPA-1|PAPA1|ZNHIT4|hIes2 | |
Cytomap | 2p13.1 | |
Type of gene | protein-coding | |
Description | INO80 complex subunit BIES2 homologPAP (Pim-1 associated protein) associated protein 1PAP-1 binding proteinPAP-1-associated protein 1high mobility group AT-hook 1-like 4zinc finger HIT domain-containing protein 4zinc finger, HIT type 4 | |
Modification date | 20210518 | |
UniProtAcc | Q9C086 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
INO80B | GO:0005654 | INO80 complex subunit B | 0000052 |
INO80B | GO:0005730 | INO80 complex subunit B | 0000052 |
INO80B | GO:0031011 | INO80 complex subunit B | 21303910 |
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RNA A-to-I events for INO80B |
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CAediting_195136(74457864, +), CAediting_195137(74457929, +), CAediting_195138(74457930, +), CAediting_195139(74457934, +), CAediting_195140(74457955, +), CAediting_195141(74457960, +), |
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RNA editing positional annotations for INO80B using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_195136 | chr2_74457864_+ | exonic |
CAediting_195137 | chr2_74457929_+ | UTR3 |
CAediting_195138 | chr2_74457930_+ | UTR3 |
CAediting_195139 | chr2_74457934_+ | UTR3 |
CAediting_195140 | chr2_74457955_+ | UTR3 |
CAediting_195141 | chr2_74457960_+ | UTR3 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for INO80B |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
IR | CAediting_195136 | chr2_74457864_+ | 74457858:74457866 | 5SS | 0+4i | TACGTAAGG | 6.01 | TACGTAGGG | 0.5 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for INO80B |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for INO80B |
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The effects of the RNA editing to the miRNA binding sites for INO80B |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_86358 | chr1_109598906_+ | ENSG00000115274.13 | ENST00000409917 | hsa-miR-197-5p | 74457636 | 74457642 | 7mer-m8 | 74457621 | 74457643 | 141 | -18.16 |
CAediting_396018 | chr5_1062918_- | ENSG00000115274.13 | ENST00000455562 | hsa-miR-4635 | 74456229 | 74456236 | 8mer-1a | 74456216 | 74456236 | 150 | -19.61 |
CAediting_1524209 | chrX_134546392_- | ENSG00000115274.13 | ENST00000455562 | hsa-miR-503-5p | 74457374 | 74457379 | 6mer | 74457364 | 74457386 | 154 | -19.96 |
CAediting_1524209 | chrX_134546392_- | ENSG00000115274.13 | ENST00000455562 | hsa-miR-503-5p | 74457379 | 74457385 | 7mer-m8 | 74457364 | 74457386 | 154 | -19.96 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for INO80B |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000233331.10 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_195136 | ENST00000233331.10 | chr2_74457864_+ | -530.60 | -529.80 | -534.50 |
CAediting_195137 | ENST00000233331.10 | chr2_74457929_+ | -529.90 | -529.80 | -534.50 |
CAediting_195138 | ENST00000233331.10 | chr2_74457930_+ | -529.80 | -529.80 | -534.50 |
CAediting_195139 | ENST00000233331.10 | chr2_74457934_+ | -531.20 | -529.80 | -534.50 |
CAediting_195140 | ENST00000233331.10 | chr2_74457955_+ | -529.50 | -529.80 | -534.50 |
CAediting_195141 | ENST00000233331.10 | chr2_74457960_+ | -529.80 | -529.80 | -534.50 |
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Relation with ADAR for INO80B |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for INO80B |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for INO80B |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for INO80B |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for INO80B |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |