CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: C6orf62 (CAeditome ID:81688)

Gene summary for C6orf62

check button Gene summary
Gene informationGene symbol

C6orf62

Gene ID

81688

Gene namechromosome 6 open reading frame 62
SynonymsNbla00237|XTP12|dJ30M3.2
Cytomap

6p22.3

Type of geneprotein-coding
Descriptionuncharacterized protein C6orf62HBV X-transactivated gene 12 proteinHBV X-transactivated protein 12HBV XAg-transactivated protein 12
Modification date20210518
UniProtAcc

Q9GZU0

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

Top

RNA A-to-I events for C6orf62

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000112308.11
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_464834(24705258, -), CAediting_464835(24705383, -), CAediting_464836(24705385, -), CAediting_464837(24705822, -), CAediting_464838(24705830, -), CAediting_464839(24706025, -), CAediting_464840(24706637, -), CAediting_464841(24706639, -), CAediting_464842(24706646, -), CAediting_464843(24706655, -), CAediting_464844(24706668, -), CAediting_464845(24706677, -), CAediting_464846(24706691, -), CAediting_464847(24706717, -), CAediting_464848(24706718, -), CAediting_464849(24706720, -), CAediting_464850(24706744, -), CAediting_464851(24707381, -), CAediting_464852(24707419, -), CAediting_464853(24707432, -), CAediting_464854(24707440, -), CAediting_464855(24707448, -), CAediting_464856(24707458, -), CAediting_464857(24707473, -), CAediting_464858(24707486, -), CAediting_464859(24707490, -), CAediting_464860(24707514, -), CAediting_464861(24707522, -), CAediting_464862(24707525, -), CAediting_464863(24707529, -), CAediting_464864(24707530, -), CAediting_464865(24707531, -), CAediting_464866(24707537, -), CAediting_464867(24707538, -), CAediting_464868(24707541, -), CAediting_464869(24707547, -), CAediting_464870(24707558, -), CAediting_464871(24707560, -), CAediting_464872(24707562, -), CAediting_464873(24707606, -), CAediting_464874(24707607, -), CAediting_464875(24707623, -), CAediting_464876(24707624, -), CAediting_464877(24707630, -), CAediting_464878(24707632, -), CAediting_464879(24707747, -), CAediting_464880(24707759, -), CAediting_464881(24707760, -), CAediting_464882(24707764, -), CAediting_464883(24707814, -), CAediting_464884(24708401, -), CAediting_464885(24708452, -), CAediting_464886(24708476, -), CAediting_464887(24708498, -), CAediting_464888(24708502, -), CAediting_464889(24708509, -), CAediting_464890(24708541, -), CAediting_464891(24708542, -), CAediting_464892(24708554, -), CAediting_464893(24708556, -), CAediting_464894(24708561, -), CAediting_464895(24708593, -), CAediting_464896(24708594, -), CAediting_464897(24708610, -), CAediting_464898(24708611, -), CAediting_464899(24708629, -), CAediting_464900(24710294, -), CAediting_464901(24710300, -), CAediting_464902(24710301, -), CAediting_464903(24710303, -), CAediting_464904(24710304, -), CAediting_464905(24710331, -), CAediting_464906(24710333, -), CAediting_464907(24710349, -), CAediting_464908(24710355, -), CAediting_464909(24710358, -), CAediting_464910(24710362, -), CAediting_464911(24710363, -), CAediting_464912(24710374, -), CAediting_464913(24710381, -), CAediting_464914(24710394, -), CAediting_464915(24710398, -), CAediting_464916(24710411, -), CAediting_464917(24710429, -), CAediting_464918(24710432, -), CAediting_464919(24710433, -), CAediting_464920(24710434, -), CAediting_464921(24710435, -), CAediting_464922(24710439, -), CAediting_464923(24710440, -), CAediting_464924(24710441, -), CAediting_464925(24710442, -), CAediting_464926(24710443, -), CAediting_464927(24710446, -), CAediting_464928(24710458, -), CAediting_464929(24710461, -), CAediting_464930(24710462, -), CAediting_464931(24710468, -), CAediting_464932(24710482, -), CAediting_464933(24710496, -), CAediting_464934(24710501, -), CAediting_464935(24710510, -), CAediting_464936(24710515, -), CAediting_464937(24710520, -), CAediting_464938(24710528, -), CAediting_464939(24710536, -), CAediting_464940(24710545, -), CAediting_464941(24710720, -), CAediting_464942(24710729, -), CAediting_464943(24710754, -), CAediting_464944(24710762, -), CAediting_464945(24710777, -), CAediting_464946(24710781, -), CAediting_464947(24710794, -), CAediting_464948(24710795, -), CAediting_464949(24710796, -), CAediting_464950(24710819, -), CAediting_464951(24710824, -), CAediting_464952(24710827, -), CAediting_464953(24710845, -), CAediting_464954(24710848, -), CAediting_464955(24710849, -), CAediting_464956(24710868, -), CAediting_464957(24710880, -), CAediting_464958(24710886, -), CAediting_464959(24710891, -), CAediting_464960(24710892, -), CAediting_464961(24710897, -), CAediting_464962(24710909, -), CAediting_464963(24710910, -), CAediting_464964(24710916, -), CAediting_464965(24710923, -), CAediting_464966(24710930, -), CAediting_464967(24710942, -), CAediting_464968(24710948, -), CAediting_464969(24710954, -), CAediting_464970(24710970, -), CAediting_464971(24710978, -), CAediting_464972(24710981, -), CAediting_464973(24711577, -), CAediting_464974(24711584, -), CAediting_464975(24712167, -), CAediting_464976(24712210, -), CAediting_464977(24712282, -), CAediting_464978(24712355, -), CAediting_464979(24712506, -), CAediting_464980(24712585, -), CAediting_464981(24712645, -), CAediting_464982(24712651, -), CAediting_464983(24712654, -), CAediting_464984(24713177, -), CAediting_464985(24713188, -), CAediting_464986(24714688, -), CAediting_464987(24714689, -), CAediting_464988(24714713, -), CAediting_464989(24714753, -), CAediting_464990(24714754, -), CAediting_464991(24714764, -), CAediting_464992(24714789, -), CAediting_464993(24714812, -), CAediting_464994(24715736, -), CAediting_464995(24720457, -), CAediting_464996(24720662, -),

Top

RNA editing positional annotations for C6orf62 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_464834chr6_24705258_-UTR3
CAediting_464835chr6_24705383_-UTR3
CAediting_464836chr6_24705385_-UTR3
CAediting_464837chr6_24705822_-UTR3
CAediting_464838chr6_24705830_-UTR3
CAediting_464839chr6_24706025_-UTR3
CAediting_464840chr6_24706637_-intronic
CAediting_464841chr6_24706639_-intronic
CAediting_464842chr6_24706646_-intronic
CAediting_464843chr6_24706655_-intronic
CAediting_464844chr6_24706668_-intronic
CAediting_464845chr6_24706677_-intronic
CAediting_464846chr6_24706691_-intronic
CAediting_464847chr6_24706717_-intronic
CAediting_464848chr6_24706718_-intronic
CAediting_464849chr6_24706720_-intronic
CAediting_464850chr6_24706744_-intronic
CAediting_464851chr6_24707381_-intronic
CAediting_464852chr6_24707419_-intronic
CAediting_464853chr6_24707432_-intronic
CAediting_464854chr6_24707440_-intronic
CAediting_464855chr6_24707448_-intronic
CAediting_464856chr6_24707458_-intronic
CAediting_464857chr6_24707473_-intronic
CAediting_464858chr6_24707486_-intronic
CAediting_464859chr6_24707490_-intronic
CAediting_464860chr6_24707514_-intronic
CAediting_464861chr6_24707522_-intronic
CAediting_464862chr6_24707525_-intronic
CAediting_464863chr6_24707529_-intronic
CAediting_464864chr6_24707530_-intronic
CAediting_464865chr6_24707531_-intronic
CAediting_464866chr6_24707537_-intronic
CAediting_464867chr6_24707538_-intronic
CAediting_464868chr6_24707541_-intronic
CAediting_464869chr6_24707547_-intronic
CAediting_464870chr6_24707558_-intronic
CAediting_464871chr6_24707560_-intronic
CAediting_464872chr6_24707562_-intronic
CAediting_464873chr6_24707606_-intronic
CAediting_464874chr6_24707607_-intronic
CAediting_464875chr6_24707623_-intronic
CAediting_464876chr6_24707624_-intronic
CAediting_464877chr6_24707630_-intronic
CAediting_464878chr6_24707632_-intronic
CAediting_464879chr6_24707747_-intronic
CAediting_464880chr6_24707759_-intronic
CAediting_464881chr6_24707760_-intronic
CAediting_464882chr6_24707764_-intronic
CAediting_464883chr6_24707814_-intronic
CAediting_464884chr6_24708401_-intronic
CAediting_464885chr6_24708452_-intronic
CAediting_464886chr6_24708476_-intronic
CAediting_464887chr6_24708498_-intronic
CAediting_464888chr6_24708502_-intronic
CAediting_464889chr6_24708509_-intronic
CAediting_464890chr6_24708541_-intronic
CAediting_464891chr6_24708542_-intronic
CAediting_464892chr6_24708554_-intronic
CAediting_464893chr6_24708556_-intronic
CAediting_464894chr6_24708561_-intronic
CAediting_464895chr6_24708593_-intronic
CAediting_464896chr6_24708594_-intronic
CAediting_464897chr6_24708610_-intronic
CAediting_464898chr6_24708611_-intronic
CAediting_464899chr6_24708629_-intronic
CAediting_464900chr6_24710294_-intronic
CAediting_464901chr6_24710300_-intronic
CAediting_464902chr6_24710301_-intronic
CAediting_464903chr6_24710303_-intronic
CAediting_464904chr6_24710304_-intronic
CAediting_464905chr6_24710331_-intronic
CAediting_464906chr6_24710333_-intronic
CAediting_464907chr6_24710349_-intronic
CAediting_464908chr6_24710355_-intronic
CAediting_464909chr6_24710358_-intronic
CAediting_464910chr6_24710362_-intronic
CAediting_464911chr6_24710363_-intronic
CAediting_464912chr6_24710374_-intronic
CAediting_464913chr6_24710381_-intronic
CAediting_464914chr6_24710394_-intronic
CAediting_464915chr6_24710398_-intronic
CAediting_464916chr6_24710411_-intronic
CAediting_464917chr6_24710429_-intronic
CAediting_464918chr6_24710432_-intronic
CAediting_464919chr6_24710433_-intronic
CAediting_464920chr6_24710434_-intronic
CAediting_464921chr6_24710435_-intronic
CAediting_464922chr6_24710439_-intronic
CAediting_464923chr6_24710440_-intronic
CAediting_464924chr6_24710441_-intronic
CAediting_464925chr6_24710442_-intronic
CAediting_464926chr6_24710443_-intronic
CAediting_464927chr6_24710446_-intronic
CAediting_464928chr6_24710458_-intronic
CAediting_464929chr6_24710461_-intronic
CAediting_464930chr6_24710462_-intronic
CAediting_464931chr6_24710468_-intronic
CAediting_464932chr6_24710482_-intronic
CAediting_464933chr6_24710496_-intronic
CAediting_464934chr6_24710501_-intronic
CAediting_464935chr6_24710510_-intronic
CAediting_464936chr6_24710515_-intronic
CAediting_464937chr6_24710520_-intronic
CAediting_464938chr6_24710528_-intronic
CAediting_464939chr6_24710536_-intronic
CAediting_464940chr6_24710545_-intronic
CAediting_464941chr6_24710720_-intronic
CAediting_464942chr6_24710729_-intronic
CAediting_464943chr6_24710754_-intronic
CAediting_464944chr6_24710762_-intronic
CAediting_464945chr6_24710777_-intronic
CAediting_464946chr6_24710781_-intronic
CAediting_464947chr6_24710794_-intronic
CAediting_464948chr6_24710795_-intronic
CAediting_464949chr6_24710796_-intronic
CAediting_464950chr6_24710819_-intronic
CAediting_464951chr6_24710824_-intronic
CAediting_464952chr6_24710827_-intronic
CAediting_464953chr6_24710845_-intronic
CAediting_464954chr6_24710848_-intronic
CAediting_464955chr6_24710849_-intronic
CAediting_464956chr6_24710868_-intronic
CAediting_464957chr6_24710880_-intronic
CAediting_464958chr6_24710886_-intronic
CAediting_464959chr6_24710891_-intronic
CAediting_464960chr6_24710892_-intronic
CAediting_464961chr6_24710897_-intronic
CAediting_464962chr6_24710909_-intronic
CAediting_464963chr6_24710910_-intronic
CAediting_464964chr6_24710916_-intronic
CAediting_464965chr6_24710923_-intronic
CAediting_464966chr6_24710930_-intronic
CAediting_464967chr6_24710942_-intronic
CAediting_464968chr6_24710948_-intronic
CAediting_464969chr6_24710954_-intronic
CAediting_464970chr6_24710970_-intronic
CAediting_464971chr6_24710978_-intronic
CAediting_464972chr6_24710981_-intronic
CAediting_464973chr6_24711577_-intronic
CAediting_464974chr6_24711584_-intronic
CAediting_464975chr6_24712167_-intronic
CAediting_464976chr6_24712210_-intronic
CAediting_464977chr6_24712282_-intronic
CAediting_464978chr6_24712355_-intronic
CAediting_464979chr6_24712506_-intronic
CAediting_464980chr6_24712585_-intronic
CAediting_464981chr6_24712645_-intronic
CAediting_464982chr6_24712651_-intronic
CAediting_464983chr6_24712654_-intronic
CAediting_464984chr6_24713177_-intronic
CAediting_464985chr6_24713188_-intronic
CAediting_464986chr6_24714688_-intronic
CAediting_464987chr6_24714689_-intronic
CAediting_464988chr6_24714713_-intronic
CAediting_464989chr6_24714753_-intronic
CAediting_464990chr6_24714754_-intronic
CAediting_464991chr6_24714764_-intronic
CAediting_464992chr6_24714789_-intronic
CAediting_464993chr6_24714812_-intronic
CAediting_464994chr6_24715736_-intronic
CAediting_464995chr6_24720457_-UTR5
CAediting_464996chr6_24720662_-UTR5

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_464840chr6_24706637_-SINEAluAluJb
CAediting_464841chr6_24706639_-SINEAluAluJb
CAediting_464842chr6_24706646_-SINEAluAluJb
CAediting_464843chr6_24706655_-SINEAluAluJb
CAediting_464844chr6_24706668_-SINEAluAluJb
CAediting_464845chr6_24706677_-SINEAluAluJb
CAediting_464846chr6_24706691_-SINEAluAluJb
CAediting_464847chr6_24706717_-SINEAluAluJb
CAediting_464848chr6_24706718_-SINEAluAluJb
CAediting_464849chr6_24706720_-SINEAluAluJb
CAediting_464850chr6_24706744_-SINEAluAluJb
CAediting_464851chr6_24707381_-SINEAluAluJr4
CAediting_464852chr6_24707419_-SINEAluAluJr4
CAediting_464853chr6_24707432_-SINEAluAluJr4
CAediting_464854chr6_24707440_-SINEAluAluJr4
CAediting_464855chr6_24707448_-SINEAluAluJr4
CAediting_464856chr6_24707458_-SINEAluAluJr4
CAediting_464857chr6_24707473_-SINEAluAluJr4
CAediting_464858chr6_24707486_-SINEAluAluJr4
CAediting_464859chr6_24707490_-SINEAluAluJr4
CAediting_464860chr6_24707514_-SINEAluAluJr4
CAediting_464861chr6_24707522_-SINEAluAluJr4
CAediting_464862chr6_24707525_-SINEAluAluJr4
CAediting_464863chr6_24707529_-SINEAluAluJr4
CAediting_464864chr6_24707530_-SINEAluAluJr4
CAediting_464865chr6_24707531_-SINEAluAluJr4
CAediting_464866chr6_24707537_-SINEAluAluJr4
CAediting_464867chr6_24707538_-SINEAluAluJr4
CAediting_464868chr6_24707541_-SINEAluAluJr4
CAediting_464869chr6_24707547_-SINEAluAluJr4
CAediting_464870chr6_24707558_-SINEAluAluJr4
CAediting_464871chr6_24707560_-SINEAluAluJr4
CAediting_464872chr6_24707562_-SINEAluAluJr4
CAediting_464873chr6_24707606_-SINEAluAluJr4
CAediting_464874chr6_24707607_-SINEAluAluJr4
CAediting_464875chr6_24707623_-SINEAluAluJr4
CAediting_464876chr6_24707624_-SINEAluAluJr4
CAediting_464877chr6_24707630_-SINEAluAluJr4
CAediting_464878chr6_24707632_-SINEAluAluJr4
CAediting_464879chr6_24707747_-SINEAluAluY
CAediting_464880chr6_24707759_-SINEAluAluY
CAediting_464881chr6_24707760_-SINEAluAluY
CAediting_464882chr6_24707764_-SINEAluAluY
CAediting_464883chr6_24707814_-SINEAluAluY
CAediting_464884chr6_24708401_-SINEAluAluJr
CAediting_464885chr6_24708452_-SINEAluAluJr
CAediting_464886chr6_24708476_-SINEAluAluJr
CAediting_464887chr6_24708498_-SINEAluAluJr
CAediting_464888chr6_24708502_-SINEAluAluJr
CAediting_464889chr6_24708509_-SINEAluAluJr
CAediting_464890chr6_24708541_-SINEAluAluJr
CAediting_464891chr6_24708542_-SINEAluAluJr
CAediting_464892chr6_24708554_-SINEAluAluJr
CAediting_464893chr6_24708556_-SINEAluAluJr
CAediting_464894chr6_24708561_-SINEAluAluJr
CAediting_464895chr6_24708593_-SINEAluAluJr
CAediting_464896chr6_24708594_-SINEAluAluJr
CAediting_464897chr6_24708610_-SINEAluAluJr
CAediting_464898chr6_24708611_-SINEAluAluJr
CAediting_464899chr6_24708629_-SINEAluAluJr
CAediting_464900chr6_24710294_-SINEAluAluSp
CAediting_464901chr6_24710300_-SINEAluAluSp
CAediting_464902chr6_24710301_-SINEAluAluSp
CAediting_464903chr6_24710303_-SINEAluAluSp
CAediting_464904chr6_24710304_-SINEAluAluSp
CAediting_464905chr6_24710331_-SINEAluAluSp
CAediting_464906chr6_24710333_-SINEAluAluSp
CAediting_464907chr6_24710349_-SINEAluAluSp
CAediting_464908chr6_24710355_-SINEAluAluSp
CAediting_464909chr6_24710358_-SINEAluAluSp
CAediting_464910chr6_24710362_-SINEAluAluSp
CAediting_464911chr6_24710363_-SINEAluAluSp
CAediting_464912chr6_24710374_-SINEAluAluSp
CAediting_464913chr6_24710381_-SINEAluAluSp
CAediting_464914chr6_24710394_-SINEAluAluSp
CAediting_464915chr6_24710398_-SINEAluAluSp
CAediting_464916chr6_24710411_-SINEAluAluSp
CAediting_464917chr6_24710429_-SINEAluAluSp
CAediting_464918chr6_24710432_-SINEAluAluSp
CAediting_464919chr6_24710433_-SINEAluAluSp
CAediting_464920chr6_24710434_-SINEAluAluSp
CAediting_464921chr6_24710435_-SINEAluAluSp
CAediting_464922chr6_24710439_-SINEAluAluSp
CAediting_464923chr6_24710440_-SINEAluAluSp
CAediting_464924chr6_24710441_-SINEAluAluSp
CAediting_464925chr6_24710442_-SINEAluAluSp
CAediting_464926chr6_24710443_-SINEAluAluSp
CAediting_464927chr6_24710446_-SINEAluAluSp
CAediting_464928chr6_24710458_-SINEAluAluSp
CAediting_464929chr6_24710461_-SINEAluAluSp
CAediting_464930chr6_24710462_-SINEAluAluSp
CAediting_464931chr6_24710468_-SINEAluAluSp
CAediting_464932chr6_24710482_-SINEAluAluSp
CAediting_464933chr6_24710496_-SINEAluAluSp
CAediting_464934chr6_24710501_-SINEAluAluSp
CAediting_464935chr6_24710510_-SINEAluAluSp
CAediting_464936chr6_24710515_-SINEAluAluSp
CAediting_464937chr6_24710520_-SINEAluAluSp
CAediting_464938chr6_24710528_-SINEAluAluSp
CAediting_464939chr6_24710536_-SINEAluAluSp
CAediting_464940chr6_24710545_-SINEAluAluSp
CAediting_464941chr6_24710720_-SINEAluAluJr
CAediting_464942chr6_24710729_-SINEAluAluJr
CAediting_464943chr6_24710754_-SINEAluAluJr
CAediting_464944chr6_24710762_-SINEAluAluJr
CAediting_464945chr6_24710777_-SINEAluAluJr
CAediting_464946chr6_24710781_-SINEAluAluJr
CAediting_464947chr6_24710794_-SINEAluAluJr
CAediting_464948chr6_24710795_-SINEAluAluJr
CAediting_464949chr6_24710796_-SINEAluAluJr
CAediting_464950chr6_24710819_-SINEAluAluJr
CAediting_464951chr6_24710824_-SINEAluAluJr
CAediting_464952chr6_24710827_-SINEAluAluJr
CAediting_464953chr6_24710845_-SINEAluAluJr
CAediting_464954chr6_24710848_-SINEAluAluJr
CAediting_464955chr6_24710849_-SINEAluAluJr
CAediting_464956chr6_24710868_-SINEAluAluJr
CAediting_464957chr6_24710880_-SINEAluAluJr
CAediting_464958chr6_24710886_-SINEAluAluJr
CAediting_464959chr6_24710891_-SINEAluAluJr
CAediting_464960chr6_24710892_-SINEAluAluJr
CAediting_464961chr6_24710897_-SINEAluAluJr
CAediting_464962chr6_24710909_-SINEAluAluJr
CAediting_464963chr6_24710910_-SINEAluAluJr
CAediting_464964chr6_24710916_-SINEAluAluJr
CAediting_464965chr6_24710923_-SINEAluAluJr
CAediting_464966chr6_24710930_-SINEAluAluJr
CAediting_464967chr6_24710942_-SINEAluAluJr
CAediting_464968chr6_24710948_-SINEAluAluJr
CAediting_464969chr6_24710954_-SINEAluAluJr
CAediting_464970chr6_24710970_-SINEAluAluJr
CAediting_464971chr6_24710978_-SINEAluAluJr
CAediting_464972chr6_24710981_-SINEAluAluJr
CAediting_464973chr6_24711577_-SINEAluAluJo
CAediting_464974chr6_24711584_-SINEAluAluJo
CAediting_464975chr6_24712167_-SINEAluAluSz6
CAediting_464976chr6_24712210_-SINEAluAluSz6
CAediting_464977chr6_24712282_-SINEAluAluSz6
CAediting_464978chr6_24712355_-SINEAluAluSz6
CAediting_464979chr6_24712506_-SINEAluAluSc
CAediting_464980chr6_24712585_-SINEAluAluSc
CAediting_464981chr6_24712645_-SINEAluAluSc
CAediting_464982chr6_24712651_-SINEAluAluSc
CAediting_464983chr6_24712654_-SINEAluAluSc
CAediting_464984chr6_24713177_-DNATcMar-TiggerTigger5b
CAediting_464985chr6_24713188_-DNATcMar-TiggerTigger5b
CAediting_464986chr6_24714688_-SINEAluAluSx
CAediting_464987chr6_24714689_-SINEAluAluSx
CAediting_464988chr6_24714713_-SINEAluAluSx
CAediting_464989chr6_24714753_-SINEAluAluSx
CAediting_464990chr6_24714754_-SINEAluAluSx
CAediting_464991chr6_24714764_-SINEAluAluSx
CAediting_464992chr6_24714789_-SINEAluAluSx
CAediting_464993chr6_24714812_-SINEAluAluSx
CAediting_464994chr6_24715736_-SINEAluAluSz6

Top

RNA A-to-I editing events in the alternative splicing sites for C6orf62

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_464933chr6_24710496_-24710488:247104965SS3+0iAGGTCGGGA-13.9GGGTCGGGA-16.51
IRCAediting_464933chr6_24710496_-24710488:247104965SS3+0iAGGTCGGGA-13.9GGGTCGGGA-16.51
MEX_1CAediting_464933chr6_24710496_-24710488:247104965SS3+0iAGGTCGGGA-13.9GGGTCGGGA-16.51
ESCAediting_464956chr6_24710868_-24710860:247108685SS3+0iAGGTGTGCA-27.62GGGTGTGCA-31.5
IRCAediting_464956chr6_24710868_-24710860:247108685SS3+0iAGGTGTGCA-27.62GGGTGTGCA-31.5
MEX_2CAediting_464956chr6_24710868_-24710860:247108685SS3+0iAGGTGTGCA-27.62GGGTGTGCA-31.5
MEX_1CAediting_464956chr6_24710868_-24710860:247108685SS3+0iAGGTGTGCA-27.62GGGTGTGCA-31.5
IRCAediting_464970chr6_24710970_-24710962:247109843SS0+6iGGTATTACTCTGTCATCCAGGCT3.56GGTATTACTCTGTCGTCCAGGCT2.7
IRCAediting_464971chr6_24710978_-24710962:247109843SS0+14iGGTATTACTCTGTCATCCAGGCT3.56GGTATTGCTCTGTCATCCAGGCT4.5
IRCAediting_464972chr6_24710981_-24710962:247109843SS0+17iGGTATTACTCTGTCATCCAGGCT3.56GGTGTTACTCTGTCATCCAGGCT4.8
ESCAediting_464976chr6_24712210_-24712210:247122323SS3+0iTTTTTGTATTTTTTTTGTAGAGA8.2TTTTTGTATTTTTTTTGTAGAGG7.92
IRCAediting_464976chr6_24712210_-24712210:247122323SS3+0iTTTTTGTATTTTTTTTGTAGAGA8.2TTTTTGTATTTTTTTTGTAGAGG7.92
MEX_2CAediting_464976chr6_24712210_-24712210:247122323SS3+0iTTTTTGTATTTTTTTTGTAGAGA8.2TTTTTGTATTTTTTTTGTAGAGG7.92
IRCAediting_464979chr6_24712506_-24712502:247125243SS0+2iGCTAATTTTTGTATTTTTAGTAG3.6GCTAATTTTTGTATTTTTGGTAG-4.36

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000112308.11.C6orf62.
boxplot

check button Correlation between RNA A-to-I editing and PSI for ENSG00000112308.11.C6orf62.
boxplot

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for C6orf62

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for C6orf62

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for C6orf62

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_464837chr6_24705822_-ENSG00000112308.11ENST00000378119hsa-miR-10a-5p24705819247058257mer-m82470581824705840146.00-16.64
CAediting_464837chr6_24705822_-ENSG00000112308.11ENST00000378119hsa-miR-10b-5p24705819247058257mer-m82470581824705840140.00-14.03
CAediting_464837chr6_24705822_-ENSG00000112308.11ENST00000378119hsa-miR-146b-3p24705820247058267mer-m82470581924705840153.00-19.23
CAediting_464837chr6_24705822_-ENSG00000112308.11ENST00000378119hsa-miR-1914-5p24705821247058277mer-m82470582024705844142.00-18.99
CAediting_464837chr6_24705822_-ENSG00000112308.11ENST00000378119hsa-miR-3620-3p24705817247058248mer-1a2470581724705838140.00-17.17
CAediting_464837chr6_24705822_-ENSG00000112308.11ENST00000378119hsa-miR-5008-3p24705822247058287mer-m82470582124705841150.00-22.14
CAediting_464837chr6_24705822_-ENSG00000112308.11ENST00000378119hsa-miR-6737-3p24705822247058287mer-m82470582124705843146.00-14.28
CAediting_464837chr6_24705822_-ENSG00000112308.11ENST00000378119hsa-miR-7157-3p24705822247058287mer-m82470582124705842154.00-16.50
CAediting_464839chr6_24706025_-ENSG00000112308.11ENST00000378119hsa-miR-447324706020247060267mer-m82470601924706040150.00-15.12
CAediting_464839chr6_24706025_-ENSG00000112308.11ENST00000378119hsa-miR-569124706023247060297mer-m82470602224706043147.00-16.69
CAediting_464839chr6_24706025_-ENSG00000112308.11ENST00000378119hsa-miR-6805-3p24706023247060297mer-m82470602224706044140.00-12.36
CAediting_464838chr6_24705830_-ENSG00000112308.11ENST00000378119hsa-miR-2115-5p24705825247058328mer-1a2470582524705845142.00-12.53
CAediting_464838chr6_24705830_-ENSG00000112308.11ENST00000378119hsa-miR-3180-5p24705828247058347mer-m82470582724705851143.00-16.18
CAediting_464838chr6_24705830_-ENSG00000112308.11ENST00000378119hsa-miR-3180-5p24705828247058347mer-m82470582724705851143.00-16.18
CAediting_464838chr6_24705830_-ENSG00000112308.11ENST00000378119hsa-miR-3180-5p24705828247058347mer-m82470582724705851143.00-16.18
CAediting_464838chr6_24705830_-ENSG00000112308.11ENST00000378119hsa-miR-488-5p24705829247058368mer-1a2470582924705852143.00-12.58

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_464835chr6_24705383_-ENSG00000112308.11ENST00000378119hsa-miR-31-3p24705381247053877mer-m82470538024705399148-10.56
CAediting_464836chr6_24705385_-ENSG00000112308.11ENST00000378119hsa-miR-31-3p24705381247053877mer-m82470538024705399148-10.56
CAediting_464838chr6_24705830_-ENSG00000112308.11ENST00000378119hsa-miR-3942-3p24705828247058358mer-1a2470582824705852149-14.36
CAediting_464839chr6_24706025_-ENSG00000112308.11ENST00000378119hsa-miR-425524706020247060278mer-1a2470602024706037150-10.25
CAediting_464836chr6_24705385_-ENSG00000112308.11ENST00000378119hsa-miR-4666b24705385247053917mer-m82470538424705406144-11.62
CAediting_464834chr6_24705258_-ENSG00000112308.11ENST00000378119hsa-miR-544a24705254247052618mer-1a2470525424705275148-10.73
CAediting_464837chr6_24705822_-ENSG00000112308.11ENST00000378119hsa-miR-58124705821247058266mer2470582024705840148-18.13

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1229413chr17_67471544_+ENSG00000112308.11ENST00000378119hsa-miR-548aa24705780247057867mer-m82470577924705803144-10.79
CAediting_1229415chr17_67471547_+ENSG00000112308.11ENST00000378119hsa-miR-548aa24705780247057867mer-m82470577924705803144-10.79
CAediting_1229414chr17_67471546_+ENSG00000112308.11ENST00000378119hsa-miR-548aa24705340247053467mer-m82470533924705367148-10.58
CAediting_1229413chr17_67471544_+ENSG00000112308.11ENST00000378119hsa-miR-548aa24705340247053467mer-m82470533924705367148-10.58
CAediting_1229415chr17_67471547_+ENSG00000112308.11ENST00000378119hsa-miR-548aa24705340247053467mer-m82470533924705367148-10.58
CAediting_1229414chr17_67471546_+ENSG00000112308.11ENST00000378119hsa-miR-548aa24705307247053148mer-1a2470530724705331150-6.62
CAediting_1229413chr17_67471544_+ENSG00000112308.11ENST00000378119hsa-miR-548aa24705307247053148mer-1a2470530724705331150-6.62
CAediting_1229415chr17_67471547_+ENSG00000112308.11ENST00000378119hsa-miR-548aa24705307247053148mer-1a2470530724705331150-6.62

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for C6orf62

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000378119.7protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_464834ENST00000378119.7chr6_24705258_--1306.10-1306.10-1312.20
CAediting_464835ENST00000378119.7chr6_24705383_--1306.10-1306.10-1312.20
CAediting_464836ENST00000378119.7chr6_24705385_--1305.40-1306.10-1312.20
CAediting_464837ENST00000378119.7chr6_24705822_--1306.40-1306.10-1312.20
CAediting_464838ENST00000378119.7chr6_24705830_--1306.60-1306.10-1312.20
CAediting_464839ENST00000378119.7chr6_24706025_--1305.80-1306.10-1312.20
CAediting_464995ENST00000378119.7chr6_24720457_--1307.90-1306.10-1312.20
CAediting_464996ENST00000378119.7chr6_24720662_--1310.30-1306.10-1312.20

Top

Relation with ADAR for C6orf62

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BLCACAediting_464911chr6_24710363_-..0.03839162564102040.183265923650494..
BRCACAediting_464911chr6_24710363_-....0.008522661210463350.134776281441909
LIHCCAediting_464911chr6_24710363_-0.04795543534197380.227649581079974..0.0175189581770840.271855465843324
HNSCCAediting_464911chr6_24710363_-....0.004139508992486280.338621622188434
ESCACAediting_464961chr6_24710897_-..0.04916065218463250.257282615272894..

Top

Relation with cancer stages for C6orf62

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BRCApathologic_stageCAediting_464961chr6_24710897_-0.01317774035046110.272727961004616
ESCAclinical_stageCAediting_464964chr6_24710916_-0.0265108148659705-0.536170431656066

Top

Relation with survival for C6orf62

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LGGCAediting_464964chr6_24710916_-0.01511534015503240.04206290.000145062
LUSCCAediting_464964chr6_24710916_-0.0273926298329470.03421612957.01
ESCACAediting_464956chr6_24710868_-0.04148429011101450.026286670.8194

Top

RelatedDrugs for C6orf62

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for C6orf62

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource