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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CCNL2 (CAeditome ID:81669)

Gene summary for CCNL2

check button Gene summary
Gene informationGene symbol

CCNL2

Gene ID

81669

Gene namecyclin L2
SynonymsANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138
Cytomap

1p36.33

Type of geneprotein-coding
Descriptioncyclin-L2cyclin Mcyclin Spaneth cell-enhanced expression protein
Modification date20210518
UniProtAcc

Q96S94

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CCNL2

GO:0005634

Cyclin-L2

17494991

CCNL2

GO:0005654

Cyclin-L2

0000052

CCNL2

GO:0043231

Cyclin-L2

0000052


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RNA A-to-I events for CCNL2

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000221978.10

check button RNA A-to-I editing events in Cancer.
CAediting_904(1388244, -), CAediting_905(1388278, -), CAediting_906(1388279, -), CAediting_907(1388399, -), CAediting_908(1388627, -), CAediting_909(1388659, -), CAediting_910(1388693, -), CAediting_911(1388695, -), CAediting_912(1388724, -), CAediting_913(1388931, -), CAediting_914(1388967, -), CAediting_915(1389072, -), CAediting_916(1389180, -), CAediting_917(1389331, -), CAediting_918(1389336, -), CAediting_919(1389343, -), CAediting_920(1389746, -), CAediting_921(1389882, -), CAediting_922(1390023, -), CAediting_923(1390035, -), CAediting_924(1390036, -), CAediting_925(1390040, -), CAediting_926(1394490, -), CAediting_927(1395985, -), CAediting_928(1396054, -), CAediting_929(1396055, -), CAediting_930(1396057, -), CAediting_931(1396067, -), CAediting_932(1396096, -), CAediting_933(1396249, -), CAediting_934(1396334, -), CAediting_935(1396364, -), CAediting_936(1396431, -), CAediting_937(1396469, -), CAediting_938(1396473, -), CAediting_939(1396498, -), CAediting_940(1396530, -), CAediting_941(1396539, -), CAediting_942(1396608, -), CAediting_943(1396676, -), CAediting_944(1396701, -), CAediting_945(1396708, -), CAediting_946(1396717, -), CAediting_947(1396860, -), CAediting_948(1396881, -), CAediting_949(1396909, -), CAediting_950(1396913, -), CAediting_951(1397089, -), CAediting_952(1397090, -), CAediting_953(1397154, -), CAediting_954(1397155, -), CAediting_955(1397387, -), CAediting_956(1397392, -), CAediting_957(1397445, -), CAediting_958(1397619, -), CAediting_959(1397627, -), CAediting_960(1397743, -), CAediting_961(1397753, -), CAediting_962(1397821, -),

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RNA editing positional annotations for CCNL2 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_912chr1_1388724_-nonsynonymous SNVENST00000408952.8c.A370Gp.I124VD.N

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_904chr1_1388244_-ncRNA_exonic
CAediting_905chr1_1388278_-ncRNA_exonic
CAediting_906chr1_1388279_-ncRNA_exonic
CAediting_907chr1_1388399_-ncRNA_exonic
CAediting_908chr1_1388627_-exonic
CAediting_909chr1_1388659_-exonic
CAediting_910chr1_1388693_-exonic
CAediting_911chr1_1388695_-exonic
CAediting_912chr1_1388724_-exonic
CAediting_913chr1_1388931_-ncRNA_intronic
CAediting_914chr1_1388967_-ncRNA_exonic
CAediting_915chr1_1389072_-ncRNA_intronic
CAediting_916chr1_1389180_-ncRNA_intronic
CAediting_917chr1_1389331_-ncRNA_intronic
CAediting_918chr1_1389336_-ncRNA_intronic
CAediting_919chr1_1389343_-ncRNA_intronic
CAediting_920chr1_1389746_-ncRNA_intronic
CAediting_921chr1_1389882_-ncRNA_intronic
CAediting_922chr1_1390023_-ncRNA_intronic
CAediting_923chr1_1390035_-ncRNA_intronic
CAediting_924chr1_1390036_-ncRNA_intronic
CAediting_925chr1_1390040_-ncRNA_intronic
CAediting_926chr1_1394490_-ncRNA_intronic
CAediting_927chr1_1395985_-ncRNA_intronic
CAediting_928chr1_1396054_-ncRNA_intronic
CAediting_929chr1_1396055_-ncRNA_intronic
CAediting_930chr1_1396057_-ncRNA_intronic
CAediting_931chr1_1396067_-ncRNA_intronic
CAediting_932chr1_1396096_-ncRNA_intronic
CAediting_933chr1_1396249_-ncRNA_intronic
CAediting_934chr1_1396334_-ncRNA_intronic
CAediting_935chr1_1396364_-ncRNA_intronic
CAediting_936chr1_1396431_-ncRNA_intronic
CAediting_937chr1_1396469_-ncRNA_intronic
CAediting_938chr1_1396473_-ncRNA_intronic
CAediting_939chr1_1396498_-ncRNA_intronic
CAediting_940chr1_1396530_-ncRNA_intronic
CAediting_941chr1_1396539_-ncRNA_intronic
CAediting_942chr1_1396608_-ncRNA_intronic
CAediting_943chr1_1396676_-ncRNA_intronic
CAediting_944chr1_1396701_-ncRNA_intronic
CAediting_945chr1_1396708_-ncRNA_intronic
CAediting_946chr1_1396717_-ncRNA_intronic
CAediting_947chr1_1396860_-ncRNA_intronic
CAediting_948chr1_1396881_-ncRNA_intronic
CAediting_949chr1_1396909_-ncRNA_intronic
CAediting_950chr1_1396913_-ncRNA_intronic
CAediting_951chr1_1397089_-ncRNA_intronic
CAediting_952chr1_1397090_-ncRNA_intronic
CAediting_953chr1_1397154_-ncRNA_intronic
CAediting_954chr1_1397155_-ncRNA_intronic
CAediting_955chr1_1397387_-ncRNA_intronic
CAediting_956chr1_1397392_-ncRNA_intronic
CAediting_957chr1_1397445_-ncRNA_intronic
CAediting_958chr1_1397619_-ncRNA_intronic
CAediting_959chr1_1397627_-ncRNA_intronic
CAediting_960chr1_1397743_-ncRNA_intronic
CAediting_961chr1_1397753_-ncRNA_intronic
CAediting_962chr1_1397821_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_904chr1_1388244_-SINEAluAluSc
CAediting_905chr1_1388278_-SINEAluAluSc
CAediting_906chr1_1388279_-SINEAluAluSc
CAediting_907chr1_1388399_-SINEAluAluSc
CAediting_908chr1_1388627_-SINEAluAluSx1
CAediting_909chr1_1388659_-SINEAluAluSx1
CAediting_910chr1_1388693_-SINEAluAluSx1
CAediting_911chr1_1388695_-SINEAluAluSx1
CAediting_912chr1_1388724_-SINEAluAluSx1
CAediting_913chr1_1388931_-SINEAluAluSp
CAediting_914chr1_1388967_-SINEAluAluSp
CAediting_915chr1_1389072_-SINEAluAluSp
CAediting_916chr1_1389180_-SINEAluAluY
CAediting_917chr1_1389331_-SINEAluAluY
CAediting_918chr1_1389336_-SINEAluAluY
CAediting_919chr1_1389343_-SINEAluAluY
CAediting_920chr1_1389746_-SINEAluAluY
CAediting_921chr1_1389882_-SINEAluAluY
CAediting_922chr1_1390023_-SINEAluAluJr
CAediting_923chr1_1390035_-SINEAluAluJr
CAediting_924chr1_1390036_-SINEAluAluJr
CAediting_925chr1_1390040_-SINEAluAluJr
CAediting_926chr1_1394490_-SINEAluAluSx
CAediting_927chr1_1395985_-SINEAluAluSx1
CAediting_928chr1_1396054_-SINEAluAluSx1
CAediting_929chr1_1396055_-SINEAluAluSx1
CAediting_930chr1_1396057_-SINEAluAluSx1
CAediting_931chr1_1396067_-SINEAluAluSx1
CAediting_932chr1_1396096_-SINEAluAluSx1
CAediting_933chr1_1396249_-SINEAluAluYk11
CAediting_934chr1_1396334_-SINEAluAluSx
CAediting_935chr1_1396364_-SINEAluAluSx
CAediting_936chr1_1396431_-SINEAluAluSx
CAediting_937chr1_1396469_-SINEAluAluSx
CAediting_938chr1_1396473_-SINEAluAluSx
CAediting_939chr1_1396498_-SINEAluAluSx
CAediting_940chr1_1396530_-SINEAluAluSx
CAediting_941chr1_1396539_-SINEAluAluSx
CAediting_942chr1_1396608_-SINEAluAluSq2
CAediting_943chr1_1396676_-SINEAluAluSq2
CAediting_944chr1_1396701_-SINEAluAluSq2
CAediting_945chr1_1396708_-SINEAluAluSq2
CAediting_946chr1_1396717_-SINEAluAluSq2
CAediting_947chr1_1396860_-SINEAluAluY
CAediting_948chr1_1396881_-SINEAluAluY
CAediting_949chr1_1396909_-SINEAluAluY
CAediting_950chr1_1396913_-SINEAluAluY
CAediting_951chr1_1397089_-SINEAluAluSq2
CAediting_952chr1_1397090_-SINEAluAluSq2
CAediting_953chr1_1397154_-SINEAluAluSq2
CAediting_954chr1_1397155_-SINEAluAluSq2
CAediting_955chr1_1397387_-SINEAluAluJb
CAediting_956chr1_1397392_-SINEAluAluJb
CAediting_957chr1_1397445_-SINEAluAluJb
CAediting_958chr1_1397619_-SINEAluAluJo
CAediting_959chr1_1397627_-SINEAluAluJo
CAediting_960chr1_1397743_-SINEAluAluJo
CAediting_961chr1_1397753_-SINEAluAluJo
CAediting_962chr1_1397821_-SINEAluAluJo

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RNA A-to-I editing events in the alternative splicing sites for CCNL2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_908chr1_1388627_-1388619:13886275SS3+0iAGGTAATTT-12.16GGGTAATTT-13.04
IRCAediting_908chr1_1388627_-1388619:13886275SS3+0iAGGTAATTT-12.16GGGTAATTT-13.04

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000221978.10.CCNL2.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000221978.10.CCNL2.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CCNL2

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CCNL2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for CCNL2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1229413chr17_67471544_+ENSG00000221978.10ENST00000482621hsa-miR-548aa139053313905397mer-m813905321390556140-11.38
CAediting_1054808chr15_66496985_-ENSG00000221978.10ENST00000482621hsa-miR-4512138749613875027mer-m813874951387516144-18.02
CAediting_1368054chr19_46709310_-ENSG00000221978.10ENST00000482621hsa-miR-320e138656013865667mer-m813865591386576140-15.1
CAediting_1368054chr19_46709310_-ENSG00000221978.10ENST00000408952hsa-miR-320e138656013865667mer-m813865591386576140-15.1
CAediting_1229413chr17_67471544_+ENSG00000221978.10ENST00000481223hsa-miR-548aa139053313905397mer-m813905321390556140-11.38
CAediting_1054808chr15_66496985_-ENSG00000221978.10ENST00000481223hsa-miR-4512138749613875027mer-m813874951387516144-18.02
CAediting_1229413chr17_67471544_+ENSG00000221978.10ENST00000488340hsa-miR-548aa139053313905397mer-m813905321390556140-11.38
CAediting_1054808chr15_66496985_-ENSG00000221978.10ENST00000488340hsa-miR-4512138749613875027mer-m813874951387516144-18.02
CAediting_1524209chrX_134546392_-ENSG00000221978.10ENST00000482621hsa-miR-503-5p139077813907836mer13907771390799144-21.85
CAediting_1524209chrX_134546392_-ENSG00000221978.10ENST00000481223hsa-miR-503-5p139077813907836mer13907771390799144-21.85
CAediting_1524209chrX_134546392_-ENSG00000221978.10ENST00000488340hsa-miR-503-5p139077813907836mer13907771390799144-21.85

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1368054chr19_46709310_-ENSG00000221978.10ENST00000481223hsa-miR-320e139110113911077mer-m813911001391116148-16.55

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CCNL2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000408952.8protein_codingSoverviewSoverview
ENST00000463260.4retained_intronSoverviewSoverview
ENST00000480479.4retained_intronSoverviewSoverview
ENST00000482365.4retained_intronSoverviewSoverview
ENST00000492998.4retained_intronSoverviewSoverview
ENST00000496007.4retained_intronSoverviewSoverview
ENST00000505849.4processed_transcriptSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_908ENST00000408952.8chr1_1388627_--681.80-678.60-682.90
CAediting_909ENST00000408952.8chr1_1388659_--680.70-678.60-682.90
CAediting_910ENST00000408952.8chr1_1388693_--680.50-678.60-682.90
CAediting_911ENST00000408952.8chr1_1388695_--679.00-678.60-682.90
CAediting_912ENST00000408952.8chr1_1388724_--678.60-678.60-682.90
CAediting_904ENST00000463260.4chr1_1388244_--722.10-718.40-730.70
CAediting_905ENST00000463260.4chr1_1388278_--721.00-718.40-730.70
CAediting_906ENST00000463260.4chr1_1388279_--721.80-718.40-730.70
CAediting_907ENST00000463260.4chr1_1388399_--720.50-718.40-730.70
CAediting_908ENST00000463260.4chr1_1388627_--718.30-718.40-730.70
CAediting_909ENST00000463260.4chr1_1388659_--720.40-718.40-730.70
CAediting_910ENST00000463260.4chr1_1388693_--718.40-718.40-730.70
CAediting_911ENST00000463260.4chr1_1388695_--719.40-718.40-730.70
CAediting_908ENST00000480479.4chr1_1388627_--1047.40-1044.30-1048.50
CAediting_909ENST00000480479.4chr1_1388659_--1046.30-1044.30-1048.50
CAediting_910ENST00000480479.4chr1_1388693_--1046.70-1044.30-1048.50
CAediting_911ENST00000480479.4chr1_1388695_--1046.60-1044.30-1048.50
CAediting_912ENST00000480479.4chr1_1388724_--1044.30-1044.30-1048.50
CAediting_914ENST00000482365.4chr1_1388967_--905.40-906.00-905.40
CAediting_908ENST00000492998.4chr1_1388627_--278.80-278.40-282.00
CAediting_909ENST00000492998.4chr1_1388659_--278.40-278.40-282.00
CAediting_910ENST00000492998.4chr1_1388693_--280.50-278.40-282.00
CAediting_911ENST00000492998.4chr1_1388695_--278.10-278.40-282.00
CAediting_912ENST00000492998.4chr1_1388724_--280.00-278.40-282.00
CAediting_908ENST00000496007.4chr1_1388627_--1588.30-1585.70-1591.40
CAediting_909ENST00000496007.4chr1_1388659_--1587.80-1585.70-1591.40
CAediting_910ENST00000496007.4chr1_1388693_--1586.10-1585.70-1591.40
CAediting_911ENST00000496007.4chr1_1388695_--1585.70-1585.70-1591.40
CAediting_912ENST00000496007.4chr1_1388724_--1585.70-1585.70-1591.40
CAediting_914ENST00000496007.4chr1_1388967_--1586.90-1585.70-1591.40
CAediting_908ENST00000505849.4chr1_1388627_--581.10-578.40-585.30
CAediting_909ENST00000505849.4chr1_1388659_--580.80-578.40-585.30
CAediting_910ENST00000505849.4chr1_1388693_--580.80-578.40-585.30
CAediting_911ENST00000505849.4chr1_1388695_--580.80-578.40-585.30
CAediting_912ENST00000505849.4chr1_1388724_--578.40-578.40-585.30

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Relation with ADAR for CCNL2

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for CCNL2

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for CCNL2

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for CCNL2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CCNL2

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource