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Editing gene: TSC22D4 (CAeditome ID:81628)

Gene summary for TSC22D4

Gene summary

Gene information	Gene symbol	TSC22D4
	Gene ID	81628
	Gene name	TSC22 domain family member 4
	Synonyms	THG-1\|THG1\|TILZ2
	Cytomap	7q22.1
	Type of gene	protein-coding
	Description	TSC22 domain family protein 4TSC22-related-inducible leucine zipper protein 2tsc-22-like protein THG-1
	Modification date	20210518
	UniProtAcc	Q9Y3Q8
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for TSC22D4

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000166925.7

RNA A-to-I editing events in Cancer.

CAediting_581451(100465142, -), CAediting_581452(100465147, -), CAediting_581453(100465216, -), CAediting_581454(100465270, -), CAediting_581455(100465708, -), CAediting_581456(100465738, -), CAediting_581457(100468493, -), CAediting_581458(100468692, -), CAediting_581459(100468725, -), CAediting_581460(100468732, -), CAediting_581461(100468733, -), CAediting_581462(100468734, -), CAediting_581463(100468745, -), CAediting_581464(100468754, -), CAediting_581465(100468771, -), CAediting_581466(100468774, -), CAediting_581467(100468837, -), CAediting_581468(100468923, -), CAediting_581469(100468981, -), CAediting_581470(100469014, -), CAediting_581471(100469023, -), CAediting_581472(100469034, -), CAediting_581473(100469046, -), CAediting_581474(100469060, -), CAediting_581475(100469078, -), CAediting_581476(100469083, -), CAediting_581477(100469115, -), CAediting_581478(100469118, -), CAediting_581479(100469127, -), CAediting_581480(100469144, -), CAediting_581481(100469145, -), CAediting_581482(100469183, -), CAediting_581483(100469193, -), CAediting_581484(100469227, -), CAediting_581485(100469296, -), CAediting_581486(100469297, -), CAediting_581487(100469298, -), CAediting_581488(100469396, -), CAediting_581489(100469503, -), CAediting_581490(100470327, -), CAediting_581491(100470345, -), CAediting_581492(100470359, -), CAediting_581493(100470360, -), CAediting_581494(100470368, -), CAediting_581495(100470389, -), CAediting_581496(100470394, -), CAediting_581497(100470397, -), CAediting_581498(100470400, -), CAediting_581499(100470420, -), CAediting_581500(100470424, -), CAediting_581501(100470429, -), CAediting_581502(100470430, -), CAediting_581503(100470456, -), CAediting_581504(100470462, -), CAediting_581505(100470465, -), CAediting_581506(100470468, -), CAediting_581507(100470469, -), CAediting_581508(100470493, -), CAediting_581509(100470498, -), CAediting_581510(100470518, -), CAediting_581511(100470523, -), CAediting_581512(100470529, -), CAediting_581513(100470578, -), CAediting_581514(100470579, -), CAediting_581515(100470585, -), CAediting_581516(100470595, -), CAediting_581517(100470597, -), CAediting_581518(100470706, -), CAediting_581519(100471480, -), CAediting_581520(100471483, -), CAediting_581521(100471510, -), CAediting_581522(100471514, -), CAediting_581523(100471535, -), CAediting_581524(100471536, -), CAediting_581525(100471537, -), CAediting_581526(100471542, -), CAediting_581527(100471548, -), CAediting_581528(100471557, -), CAediting_581529(100471560, -), CAediting_581530(100471592, -), CAediting_581531(100471602, -), CAediting_581532(100471618, -), CAediting_581533(100471628, -), CAediting_581534(100471640, -), CAediting_581535(100471653, -), CAediting_581536(100471657, -), CAediting_581537(100471658, -), CAediting_581538(100471664, -), CAediting_581539(100471696, -), CAediting_581540(100471702, -), CAediting_581541(100471706, -), CAediting_581542(100471707, -), CAediting_581543(100473477, -), CAediting_581544(100473499, -), CAediting_581545(100473502, -), CAediting_581546(100473507, -), CAediting_581547(100473514, -), CAediting_581548(100473527, -), CAediting_581549(100473534, -), CAediting_581550(100473544, -), CAediting_581551(100473553, -), CAediting_581552(100473566, -), CAediting_581553(100473570, -), CAediting_581554(100473579, -), CAediting_581555(100473580, -), CAediting_581556(100473602, -), CAediting_581557(100473606, -), CAediting_581558(100473609, -), CAediting_581559(100473617, -), CAediting_581560(100473618, -), CAediting_581561(100473619, -), CAediting_581562(100473620, -), CAediting_581563(100473621, -), CAediting_581564(100473660, -), CAediting_581565(100473669, -), CAediting_581566(100473684, -), CAediting_581567(100473691, -), CAediting_581568(100473692, -), CAediting_581569(100473701, -), CAediting_581570(100473714, -), CAediting_581571(100473715, -), CAediting_581572(100473815, -), CAediting_581573(100473835, -), CAediting_581574(100473836, -), CAediting_581575(100473859, -), CAediting_581576(100474885, -), CAediting_581577(100474900, -),

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RNA editing positional annotations for TSC22D4 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_581451	chr7_100465142_-	ncRNA_intronic
CAediting_581452	chr7_100465147_-	ncRNA_intronic
CAediting_581453	chr7_100465216_-	ncRNA_intronic
CAediting_581454	chr7_100465270_-	ncRNA_intronic
CAediting_581455	chr7_100465708_-	ncRNA_intronic
CAediting_581456	chr7_100465738_-	ncRNA_intronic
CAediting_581457	chr7_100468493_-	ncRNA_intronic
CAediting_581458	chr7_100468692_-	ncRNA_intronic
CAediting_581459	chr7_100468725_-	ncRNA_intronic
CAediting_581460	chr7_100468732_-	ncRNA_intronic
CAediting_581461	chr7_100468733_-	ncRNA_intronic
CAediting_581462	chr7_100468734_-	ncRNA_intronic
CAediting_581463	chr7_100468745_-	ncRNA_intronic
CAediting_581464	chr7_100468754_-	ncRNA_intronic
CAediting_581465	chr7_100468771_-	ncRNA_intronic
CAediting_581466	chr7_100468774_-	ncRNA_intronic
CAediting_581467	chr7_100468837_-	ncRNA_intronic
CAediting_581468	chr7_100468923_-	ncRNA_intronic
CAediting_581469	chr7_100468981_-	ncRNA_intronic
CAediting_581470	chr7_100469014_-	ncRNA_intronic
CAediting_581471	chr7_100469023_-	ncRNA_intronic
CAediting_581472	chr7_100469034_-	ncRNA_intronic
CAediting_581473	chr7_100469046_-	ncRNA_intronic
CAediting_581474	chr7_100469060_-	ncRNA_intronic
CAediting_581475	chr7_100469078_-	ncRNA_intronic
CAediting_581476	chr7_100469083_-	ncRNA_intronic
CAediting_581477	chr7_100469115_-	ncRNA_intronic
CAediting_581478	chr7_100469118_-	ncRNA_intronic
CAediting_581479	chr7_100469127_-	ncRNA_intronic
CAediting_581480	chr7_100469144_-	ncRNA_intronic
CAediting_581481	chr7_100469145_-	ncRNA_intronic
CAediting_581482	chr7_100469183_-	ncRNA_intronic
CAediting_581483	chr7_100469193_-	ncRNA_intronic
CAediting_581484	chr7_100469227_-	ncRNA_intronic
CAediting_581485	chr7_100469296_-	ncRNA_intronic
CAediting_581486	chr7_100469297_-	ncRNA_intronic
CAediting_581487	chr7_100469298_-	ncRNA_intronic
CAediting_581488	chr7_100469396_-	ncRNA_intronic
CAediting_581489	chr7_100469503_-	ncRNA_intronic
CAediting_581490	chr7_100470327_-	ncRNA_intronic
CAediting_581491	chr7_100470345_-	ncRNA_intronic
CAediting_581492	chr7_100470359_-	ncRNA_intronic
CAediting_581493	chr7_100470360_-	ncRNA_intronic
CAediting_581494	chr7_100470368_-	ncRNA_intronic
CAediting_581495	chr7_100470389_-	ncRNA_intronic
CAediting_581496	chr7_100470394_-	ncRNA_intronic
CAediting_581497	chr7_100470397_-	ncRNA_intronic
CAediting_581498	chr7_100470400_-	ncRNA_intronic
CAediting_581499	chr7_100470420_-	ncRNA_intronic
CAediting_581500	chr7_100470424_-	ncRNA_intronic
CAediting_581501	chr7_100470429_-	ncRNA_intronic
CAediting_581502	chr7_100470430_-	ncRNA_intronic
CAediting_581503	chr7_100470456_-	ncRNA_intronic
CAediting_581504	chr7_100470462_-	ncRNA_intronic
CAediting_581505	chr7_100470465_-	ncRNA_intronic
CAediting_581506	chr7_100470468_-	ncRNA_intronic
CAediting_581507	chr7_100470469_-	ncRNA_intronic
CAediting_581508	chr7_100470493_-	ncRNA_intronic
CAediting_581509	chr7_100470498_-	ncRNA_intronic
CAediting_581510	chr7_100470518_-	ncRNA_intronic
CAediting_581511	chr7_100470523_-	ncRNA_intronic
CAediting_581512	chr7_100470529_-	ncRNA_intronic
CAediting_581513	chr7_100470578_-	ncRNA_intronic
CAediting_581514	chr7_100470579_-	ncRNA_intronic
CAediting_581515	chr7_100470585_-	ncRNA_intronic
CAediting_581516	chr7_100470595_-	ncRNA_intronic
CAediting_581517	chr7_100470597_-	ncRNA_intronic
CAediting_581518	chr7_100470706_-	ncRNA_intronic
CAediting_581519	chr7_100471480_-	ncRNA_intronic
CAediting_581520	chr7_100471483_-	ncRNA_intronic
CAediting_581521	chr7_100471510_-	ncRNA_intronic
CAediting_581522	chr7_100471514_-	ncRNA_intronic
CAediting_581523	chr7_100471535_-	ncRNA_intronic
CAediting_581524	chr7_100471536_-	ncRNA_intronic
CAediting_581525	chr7_100471537_-	ncRNA_intronic
CAediting_581526	chr7_100471542_-	ncRNA_intronic
CAediting_581527	chr7_100471548_-	ncRNA_intronic
CAediting_581528	chr7_100471557_-	ncRNA_intronic
CAediting_581529	chr7_100471560_-	ncRNA_intronic
CAediting_581530	chr7_100471592_-	ncRNA_intronic
CAediting_581531	chr7_100471602_-	ncRNA_intronic
CAediting_581532	chr7_100471618_-	ncRNA_intronic
CAediting_581533	chr7_100471628_-	ncRNA_intronic
CAediting_581534	chr7_100471640_-	ncRNA_intronic
CAediting_581535	chr7_100471653_-	ncRNA_intronic
CAediting_581536	chr7_100471657_-	ncRNA_intronic
CAediting_581537	chr7_100471658_-	ncRNA_intronic
CAediting_581538	chr7_100471664_-	ncRNA_intronic
CAediting_581539	chr7_100471696_-	ncRNA_intronic
CAediting_581540	chr7_100471702_-	ncRNA_intronic
CAediting_581541	chr7_100471706_-	ncRNA_intronic
CAediting_581542	chr7_100471707_-	ncRNA_intronic
CAediting_581543	chr7_100473477_-	ncRNA_intronic
CAediting_581544	chr7_100473499_-	ncRNA_intronic
CAediting_581545	chr7_100473502_-	ncRNA_intronic
CAediting_581546	chr7_100473507_-	ncRNA_intronic
CAediting_581547	chr7_100473514_-	ncRNA_intronic
CAediting_581548	chr7_100473527_-	ncRNA_intronic
CAediting_581549	chr7_100473534_-	ncRNA_intronic
CAediting_581550	chr7_100473544_-	ncRNA_intronic
CAediting_581551	chr7_100473553_-	ncRNA_intronic
CAediting_581552	chr7_100473566_-	ncRNA_intronic
CAediting_581553	chr7_100473570_-	ncRNA_intronic
CAediting_581554	chr7_100473579_-	ncRNA_intronic
CAediting_581555	chr7_100473580_-	ncRNA_intronic
CAediting_581556	chr7_100473602_-	ncRNA_intronic
CAediting_581557	chr7_100473606_-	ncRNA_intronic
CAediting_581558	chr7_100473609_-	ncRNA_intronic
CAediting_581559	chr7_100473617_-	ncRNA_intronic
CAediting_581560	chr7_100473618_-	ncRNA_intronic
CAediting_581561	chr7_100473619_-	ncRNA_intronic
CAediting_581562	chr7_100473620_-	ncRNA_intronic
CAediting_581563	chr7_100473621_-	ncRNA_intronic
CAediting_581564	chr7_100473660_-	ncRNA_intronic
CAediting_581565	chr7_100473669_-	ncRNA_intronic
CAediting_581566	chr7_100473684_-	ncRNA_intronic
CAediting_581567	chr7_100473691_-	ncRNA_intronic
CAediting_581568	chr7_100473692_-	ncRNA_intronic
CAediting_581569	chr7_100473701_-	ncRNA_intronic
CAediting_581570	chr7_100473714_-	ncRNA_intronic
CAediting_581571	chr7_100473715_-	ncRNA_intronic
CAediting_581572	chr7_100473815_-	ncRNA_exonic
CAediting_581573	chr7_100473835_-	ncRNA_exonic
CAediting_581574	chr7_100473836_-	ncRNA_exonic
CAediting_581575	chr7_100473859_-	ncRNA_exonic
CAediting_581576	chr7_100474885_-	ncRNA_intronic
CAediting_581577	chr7_100474900_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_581451	chr7_100465142_-	SINE	Alu	AluJr
CAediting_581452	chr7_100465147_-	SINE	Alu	AluJr
CAediting_581453	chr7_100465216_-	SINE	Alu	AluSz
CAediting_581454	chr7_100465270_-	SINE	Alu	AluSz
CAediting_581455	chr7_100465708_-	SINE	Alu	AluJb
CAediting_581456	chr7_100465738_-	SINE	Alu	AluJb
CAediting_581458	chr7_100468692_-	SINE	Alu	AluSx1
CAediting_581459	chr7_100468725_-	SINE	Alu	AluSx1
CAediting_581460	chr7_100468732_-	SINE	Alu	AluSx1
CAediting_581461	chr7_100468733_-	SINE	Alu	AluSx1
CAediting_581462	chr7_100468734_-	SINE	Alu	AluSx1
CAediting_581463	chr7_100468745_-	SINE	Alu	AluSx1
CAediting_581464	chr7_100468754_-	SINE	Alu	AluSx1
CAediting_581465	chr7_100468771_-	SINE	Alu	AluSx1
CAediting_581466	chr7_100468774_-	SINE	Alu	AluSx1
CAediting_581467	chr7_100468837_-	SINE	Alu	AluSx1
CAediting_581468	chr7_100468923_-	SINE	Alu	AluSx1
CAediting_581469	chr7_100468981_-	SINE	Alu	AluSq
CAediting_581470	chr7_100469014_-	SINE	Alu	AluSq
CAediting_581471	chr7_100469023_-	SINE	Alu	AluSq
CAediting_581472	chr7_100469034_-	SINE	Alu	AluSq
CAediting_581473	chr7_100469046_-	SINE	Alu	AluSq
CAediting_581474	chr7_100469060_-	SINE	Alu	AluSq
CAediting_581475	chr7_100469078_-	SINE	Alu	AluSq
CAediting_581476	chr7_100469083_-	SINE	Alu	AluSq
CAediting_581477	chr7_100469115_-	SINE	Alu	AluSq
CAediting_581478	chr7_100469118_-	SINE	Alu	AluSq
CAediting_581479	chr7_100469127_-	SINE	Alu	AluSq
CAediting_581480	chr7_100469144_-	SINE	Alu	AluSq
CAediting_581481	chr7_100469145_-	SINE	Alu	AluSq
CAediting_581482	chr7_100469183_-	SINE	Alu	AluSq
CAediting_581483	chr7_100469193_-	SINE	Alu	AluSq
CAediting_581484	chr7_100469227_-	SINE	Alu	AluSq
CAediting_581490	chr7_100470327_-	SINE	Alu	AluSq2
CAediting_581491	chr7_100470345_-	SINE	Alu	AluSq2
CAediting_581492	chr7_100470359_-	SINE	Alu	AluSq2
CAediting_581493	chr7_100470360_-	SINE	Alu	AluSq2
CAediting_581494	chr7_100470368_-	SINE	Alu	AluSq2
CAediting_581495	chr7_100470389_-	SINE	Alu	AluSq2
CAediting_581496	chr7_100470394_-	SINE	Alu	AluSq2
CAediting_581497	chr7_100470397_-	SINE	Alu	AluSq2
CAediting_581498	chr7_100470400_-	SINE	Alu	AluSq2
CAediting_581499	chr7_100470420_-	SINE	Alu	AluSq2
CAediting_581500	chr7_100470424_-	SINE	Alu	AluSq2
CAediting_581501	chr7_100470429_-	SINE	Alu	AluSq2
CAediting_581502	chr7_100470430_-	SINE	Alu	AluSq2
CAediting_581503	chr7_100470456_-	SINE	Alu	AluSq2
CAediting_581504	chr7_100470462_-	SINE	Alu	AluSq2
CAediting_581505	chr7_100470465_-	SINE	Alu	AluSq2
CAediting_581506	chr7_100470468_-	SINE	Alu	AluSq2
CAediting_581507	chr7_100470469_-	SINE	Alu	AluSq2
CAediting_581508	chr7_100470493_-	SINE	Alu	AluSq2
CAediting_581509	chr7_100470498_-	SINE	Alu	AluSq2
CAediting_581510	chr7_100470518_-	SINE	Alu	AluSq2
CAediting_581511	chr7_100470523_-	SINE	Alu	AluSq2
CAediting_581512	chr7_100470529_-	SINE	Alu	AluSq2
CAediting_581513	chr7_100470578_-	SINE	Alu	AluSq2
CAediting_581514	chr7_100470579_-	SINE	Alu	AluSq2
CAediting_581515	chr7_100470585_-	SINE	Alu	AluSq2
CAediting_581516	chr7_100470595_-	SINE	Alu	AluSq2
CAediting_581517	chr7_100470597_-	SINE	Alu	AluSq2
CAediting_581519	chr7_100471480_-	SINE	Alu	AluSx
CAediting_581520	chr7_100471483_-	SINE	Alu	AluSx
CAediting_581521	chr7_100471510_-	SINE	Alu	AluSx
CAediting_581522	chr7_100471514_-	SINE	Alu	AluSx
CAediting_581523	chr7_100471535_-	SINE	Alu	AluSx
CAediting_581524	chr7_100471536_-	SINE	Alu	AluSx
CAediting_581525	chr7_100471537_-	SINE	Alu	AluSx
CAediting_581526	chr7_100471542_-	SINE	Alu	AluSx
CAediting_581527	chr7_100471548_-	SINE	Alu	AluSx
CAediting_581528	chr7_100471557_-	SINE	Alu	AluSx
CAediting_581529	chr7_100471560_-	SINE	Alu	AluSx
CAediting_581530	chr7_100471592_-	SINE	Alu	AluSx
CAediting_581531	chr7_100471602_-	SINE	Alu	AluSx
CAediting_581532	chr7_100471618_-	SINE	Alu	AluSx
CAediting_581533	chr7_100471628_-	SINE	Alu	AluSx
CAediting_581534	chr7_100471640_-	SINE	Alu	AluSx
CAediting_581535	chr7_100471653_-	SINE	Alu	AluSx
CAediting_581536	chr7_100471657_-	SINE	Alu	AluSx
CAediting_581537	chr7_100471658_-	SINE	Alu	AluSx
CAediting_581538	chr7_100471664_-	SINE	Alu	AluSx
CAediting_581539	chr7_100471696_-	SINE	Alu	AluSx
CAediting_581540	chr7_100471702_-	SINE	Alu	AluSx
CAediting_581541	chr7_100471706_-	SINE	Alu	AluSx
CAediting_581542	chr7_100471707_-	SINE	Alu	AluSx
CAediting_581543	chr7_100473477_-	SINE	Alu	AluSx
CAediting_581544	chr7_100473499_-	SINE	Alu	AluSx
CAediting_581545	chr7_100473502_-	SINE	Alu	AluSx
CAediting_581546	chr7_100473507_-	SINE	Alu	AluSx
CAediting_581547	chr7_100473514_-	SINE	Alu	AluSx
CAediting_581548	chr7_100473527_-	SINE	Alu	AluSx
CAediting_581549	chr7_100473534_-	SINE	Alu	AluSx
CAediting_581550	chr7_100473544_-	SINE	Alu	AluSx
CAediting_581551	chr7_100473553_-	SINE	Alu	AluSx
CAediting_581552	chr7_100473566_-	SINE	Alu	AluSx
CAediting_581553	chr7_100473570_-	SINE	Alu	AluSx
CAediting_581554	chr7_100473579_-	SINE	Alu	AluSx
CAediting_581555	chr7_100473580_-	SINE	Alu	AluSx
CAediting_581556	chr7_100473602_-	SINE	Alu	AluSx
CAediting_581557	chr7_100473606_-	SINE	Alu	AluSx
CAediting_581558	chr7_100473609_-	SINE	Alu	AluSx
CAediting_581559	chr7_100473617_-	SINE	Alu	AluSx
CAediting_581560	chr7_100473618_-	SINE	Alu	AluSx
CAediting_581561	chr7_100473619_-	SINE	Alu	AluSx
CAediting_581562	chr7_100473620_-	SINE	Alu	AluSx
CAediting_581563	chr7_100473621_-	SINE	Alu	AluSx
CAediting_581564	chr7_100473660_-	SINE	Alu	AluSx
CAediting_581565	chr7_100473669_-	SINE	Alu	AluSx
CAediting_581566	chr7_100473684_-	SINE	Alu	AluSx
CAediting_581567	chr7_100473691_-	SINE	Alu	AluSx
CAediting_581568	chr7_100473692_-	SINE	Alu	AluSx
CAediting_581569	chr7_100473701_-	SINE	Alu	AluSx
CAediting_581570	chr7_100473714_-	SINE	Alu	AluSx
CAediting_581571	chr7_100473715_-	SINE	Alu	AluSx
CAediting_581572	chr7_100473815_-	SINE	Alu	FLAM_C
CAediting_581573	chr7_100473835_-	SINE	Alu	FLAM_C
CAediting_581574	chr7_100473836_-	SINE	Alu	FLAM_C
CAediting_581575	chr7_100473859_-	SINE	Alu	FLAM_C
CAediting_581576	chr7_100474885_-	SINE	Alu	AluJo
CAediting_581577	chr7_100474900_-	SINE	Alu	AluJo

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RNA A-to-I editing events in the alternative splicing sites for TSC22D4

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000166925.7.TSC22D4.

Correlation between RNA A-to-I editing and PSI for ENSG00000166925.7.TSC22D4.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TSC22D4

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TSC22D4

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TSC22D4

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_228905	chr2_188297554_+	ENSG00000166925.7	ENST00000300181	hsa-miR-561-3p	100466532	100466538	7mer-m8	100466531	100466552	150	-10.96
CAediting_228905	chr2_188297554_+	ENSG00000166925.7	ENST00000423266	hsa-miR-561-3p	100466532	100466538	7mer-m8	100466531	100466552	150	-10.96
CAediting_468389	chr6_31355314_-	ENSG00000166925.7	ENST00000300181	hsa-miR-6891-5p	100466621	100466627	7mer-m8	100466620	100466638	145	-23.12
CAediting_468389	chr6_31355314_-	ENSG00000166925.7	ENST00000423266	hsa-miR-6891-5p	100466621	100466627	7mer-m8	100466620	100466638	145	-23.12
CAediting_468389	chr6_31355314_-	ENSG00000166925.7	ENST00000393991	hsa-miR-6891-5p	100466621	100466627	7mer-m8	100466620	100466638	145	-23.12

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_580943	chr7_100356700_+	ENSG00000166925.7	ENST00000300181	hsa-miR-6840-3p	100466706	100466713	8mer-1a	100466706	100466727	152	-27.15
CAediting_580943	chr7_100356700_+	ENSG00000166925.7	ENST00000423266	hsa-miR-6840-3p	100466706	100466713	8mer-1a	100466706	100466727	152	-27.15
CAediting_580943	chr7_100356700_+	ENSG00000166925.7	ENST00000393991	hsa-miR-6840-3p	100466706	100466713	8mer-1a	100466706	100466727	152	-27.15

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TSC22D4

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000493217.1	retained_intron

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_581572	ENST00000493217.1	chr7_100473815_-	-944.60	-943.10	-947.20
CAediting_581573	ENST00000493217.1	chr7_100473835_-	-943.10	-943.10	-947.20
CAediting_581574	ENST00000493217.1	chr7_100473836_-	-943.10	-943.10	-947.20
CAediting_581575	ENST00000493217.1	chr7_100473859_-	-943.60	-943.10	-947.20

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Relation with ADAR for TSC22D4

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
OV	CAediting_581525	chr7_100471537_-	2.65621009147184e-05	0.479628248704535	.	.	.	.

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Relation with cancer stages for TSC22D4

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
OV	clinical_stage	CAediting_581525	chr7_100471537_-	0.0136771786324699	-0.297707707543261

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Relation with survival for TSC22D4

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for TSC22D4

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for TSC22D4

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene