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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CALM2 (CAeditome ID:805) |
Gene summary for CALM2 |
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Gene information | Gene symbol | CALM2 | Gene ID | 805 |
Gene name | calmodulin 2 | |
Synonyms | CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM | |
Cytomap | 2p21 | |
Type of gene | protein-coding | |
Description | calmodulin-2Calmodulin-1Calmodulin-3LP7057 proteincalmodulin 2 (phosphorylase kinase, delta)phosphorylase kinase deltaphosphorylase kinase subunit deltaprepro-calmodulin 2 | |
Modification date | 20210518 | |
UniProtAcc | P0DP24 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
CALM2 | GO:0005509 | Calmodulin-2 | 11807546 |
CALM2 | GO:0005509 | Calmodulin-2 | 23040497 |
CALM2 | GO:0005509 | Calmodulin-2 | 26164367 |
CALM2 | GO:0005509 | Calmodulin-2 | 26969752 |
CALM2 | GO:0005509 | Calmodulin-2 | 27516456 |
CALM2 | GO:0005509 | Calmodulin-2 | 7607248 |
CALM2 | GO:0005509 | Calmodulin-2 | 8631777 |
CALM2 | GO:0010856 | Calmodulin-2 | 11807546 |
CALM2 | GO:0019855 | Calmodulin-2 | 26969752 |
CALM2 | GO:0072542 | Calmodulin-2 | 8631777 |
CALM2 | GO:0010880 | Calmodulin-2 | 20226167 |
CALM2 | GO:0032516 | Calmodulin-2 | 8631777 |
CALM2 | GO:0035307 | Calmodulin-2 | 8631777 |
CALM2 | GO:0051343 | Calmodulin-2 | 8631777 |
CALM2 | GO:0051592 | Calmodulin-2 | 7607248 |
CALM2 | GO:0060315 | Calmodulin-2 | 26164367 |
CALM2 | GO:0060316 | Calmodulin-2 | 20226167 |
CALM2 | GO:0000922 | Calmodulin-2 | 16760425 |
CALM2 | GO:0005737 | Calmodulin-2 | 27165696 |
CALM2 | GO:0005813 | Calmodulin-2 | 16760425 |
CALM2 | GO:0005876 | Calmodulin-2 | 16760425 |
CALM2 | GO:0030017 | Calmodulin-2 | 20226167 |
CALM2 | GO:0032991 | Calmodulin-2 | 19855925 |
CALM2 | GO:0034704 | Calmodulin-2 | 23040497 |
CALM2 | GO:1902494 | Calmodulin-2 | 11807546 |
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RNA A-to-I events for CALM2 |
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CAediting_177568(47163460, -), CAediting_177569(47163471, -), CAediting_177570(47163493, -), CAediting_177571(47163498, -), CAediting_177572(47163538, -), CAediting_177573(47163539, -), CAediting_177574(47163548, -), CAediting_177575(47163570, -), CAediting_177576(47163571, -), CAediting_177577(47163597, -), CAediting_177578(47163614, -), CAediting_177579(47163635, -), CAediting_177580(47163636, -), CAediting_177581(47163639, -), CAediting_177582(47163650, -), CAediting_177583(47163664, -), CAediting_177584(47163669, -), CAediting_177585(47163678, -), CAediting_177586(47163684, -), CAediting_177587(47163704, -), CAediting_177588(47163867, -), CAediting_177589(47163897, -), CAediting_177590(47163901, -), CAediting_177591(47163981, -), CAediting_177592(47164475, -), CAediting_177593(47164485, -), CAediting_177594(47164559, -), CAediting_177595(47164570, -), CAediting_177596(47167511, -), CAediting_177597(47167562, -), CAediting_177598(47167594, -), CAediting_177599(47167653, -), CAediting_177600(47167656, -), CAediting_177601(47167830, -), CAediting_177602(47167833, -), CAediting_177603(47167900, -), CAediting_177604(47167907, -), CAediting_177605(47167923, -), CAediting_177606(47168480, -), CAediting_177607(47168504, -), CAediting_177608(47168522, -), CAediting_177609(47168547, -), CAediting_177610(47168571, -), CAediting_177611(47168573, -), CAediting_177612(47168576, -), CAediting_177613(47168611, -), CAediting_177614(47168902, -), CAediting_177615(47168915, -), CAediting_177616(47168942, -), CAediting_177617(47168954, -), CAediting_177618(47168956, -), CAediting_177619(47168966, -), CAediting_177620(47168971, -), CAediting_177621(47169359, -), CAediting_177622(47169406, -), CAediting_177623(47174290, -), |
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RNA editing positional annotations for CALM2 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
CAediting_177596 | chr2_47167511_- | nonsynonymous SNV | ENST00000409563.4 | c.A140G | p.H47R | D | . | N |
CAediting_177597 | chr2_47167562_- | nonsynonymous SNV | ENST00000409563.4 | c.A89G | p.H30R | D | . | N |
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CAeditome ID | Position | Variant type |
CAediting_177568 | chr2_47163460_- | ncRNA_exonic |
CAediting_177569 | chr2_47163471_- | ncRNA_exonic |
CAediting_177570 | chr2_47163493_- | ncRNA_exonic |
CAediting_177571 | chr2_47163498_- | ncRNA_exonic |
CAediting_177572 | chr2_47163538_- | ncRNA_exonic |
CAediting_177573 | chr2_47163539_- | ncRNA_exonic |
CAediting_177574 | chr2_47163548_- | ncRNA_exonic |
CAediting_177575 | chr2_47163570_- | ncRNA_exonic |
CAediting_177576 | chr2_47163571_- | ncRNA_exonic |
CAediting_177577 | chr2_47163597_- | ncRNA_exonic |
CAediting_177578 | chr2_47163614_- | ncRNA_exonic |
CAediting_177579 | chr2_47163635_- | ncRNA_exonic |
CAediting_177580 | chr2_47163636_- | ncRNA_exonic |
CAediting_177581 | chr2_47163639_- | ncRNA_exonic |
CAediting_177582 | chr2_47163650_- | ncRNA_exonic |
CAediting_177583 | chr2_47163664_- | ncRNA_exonic |
CAediting_177584 | chr2_47163669_- | ncRNA_exonic |
CAediting_177585 | chr2_47163678_- | ncRNA_exonic |
CAediting_177586 | chr2_47163684_- | ncRNA_exonic |
CAediting_177587 | chr2_47163704_- | ncRNA_exonic |
CAediting_177588 | chr2_47163867_- | ncRNA_exonic |
CAediting_177589 | chr2_47163897_- | ncRNA_exonic |
CAediting_177590 | chr2_47163901_- | ncRNA_exonic |
CAediting_177591 | chr2_47163981_- | ncRNA_intronic |
CAediting_177592 | chr2_47164475_- | ncRNA_intronic |
CAediting_177593 | chr2_47164485_- | ncRNA_intronic |
CAediting_177594 | chr2_47164559_- | ncRNA_intronic |
CAediting_177595 | chr2_47164570_- | ncRNA_intronic |
CAediting_177596 | chr2_47167511_- | exonic |
CAediting_177597 | chr2_47167562_- | exonic |
CAediting_177598 | chr2_47167594_- | exonic |
CAediting_177599 | chr2_47167653_- | ncRNA_intronic |
CAediting_177600 | chr2_47167656_- | ncRNA_intronic |
CAediting_177601 | chr2_47167830_- | ncRNA_intronic |
CAediting_177602 | chr2_47167833_- | ncRNA_intronic |
CAediting_177603 | chr2_47167900_- | ncRNA_intronic |
CAediting_177604 | chr2_47167907_- | ncRNA_intronic |
CAediting_177605 | chr2_47167923_- | ncRNA_intronic |
CAediting_177606 | chr2_47168480_- | ncRNA_intronic |
CAediting_177607 | chr2_47168504_- | ncRNA_intronic |
CAediting_177608 | chr2_47168522_- | ncRNA_intronic |
CAediting_177609 | chr2_47168547_- | ncRNA_intronic |
CAediting_177610 | chr2_47168571_- | ncRNA_intronic |
CAediting_177611 | chr2_47168573_- | ncRNA_intronic |
CAediting_177612 | chr2_47168576_- | ncRNA_intronic |
CAediting_177613 | chr2_47168611_- | ncRNA_intronic |
CAediting_177614 | chr2_47168902_- | ncRNA_intronic |
CAediting_177615 | chr2_47168915_- | ncRNA_intronic |
CAediting_177616 | chr2_47168942_- | ncRNA_intronic |
CAediting_177617 | chr2_47168954_- | ncRNA_intronic |
CAediting_177618 | chr2_47168956_- | ncRNA_intronic |
CAediting_177619 | chr2_47168966_- | ncRNA_intronic |
CAediting_177620 | chr2_47168971_- | ncRNA_intronic |
CAediting_177621 | chr2_47169359_- | ncRNA_intronic |
CAediting_177622 | chr2_47169406_- | ncRNA_intronic |
CAediting_177623 | chr2_47174290_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_177568 | chr2_47163460_- | SINE | Alu | AluSp |
CAediting_177569 | chr2_47163471_- | SINE | Alu | AluSp |
CAediting_177570 | chr2_47163493_- | SINE | Alu | AluSp |
CAediting_177571 | chr2_47163498_- | SINE | Alu | AluSp |
CAediting_177572 | chr2_47163538_- | SINE | Alu | AluSp |
CAediting_177573 | chr2_47163539_- | SINE | Alu | AluSp |
CAediting_177574 | chr2_47163548_- | SINE | Alu | AluSp |
CAediting_177575 | chr2_47163570_- | SINE | Alu | AluSp |
CAediting_177576 | chr2_47163571_- | SINE | Alu | AluSp |
CAediting_177577 | chr2_47163597_- | SINE | Alu | AluSp |
CAediting_177578 | chr2_47163614_- | SINE | Alu | AluSp |
CAediting_177579 | chr2_47163635_- | SINE | Alu | AluSp |
CAediting_177580 | chr2_47163636_- | SINE | Alu | AluSp |
CAediting_177581 | chr2_47163639_- | SINE | Alu | AluSp |
CAediting_177582 | chr2_47163650_- | SINE | Alu | AluSp |
CAediting_177583 | chr2_47163664_- | SINE | Alu | AluSp |
CAediting_177584 | chr2_47163669_- | SINE | Alu | AluSp |
CAediting_177585 | chr2_47163678_- | SINE | Alu | AluSp |
CAediting_177586 | chr2_47163684_- | SINE | Alu | AluSp |
CAediting_177587 | chr2_47163704_- | SINE | Alu | AluSp |
CAediting_177588 | chr2_47163867_- | SINE | Alu | AluSx |
CAediting_177589 | chr2_47163897_- | SINE | Alu | AluSx |
CAediting_177590 | chr2_47163901_- | SINE | Alu | AluSx |
CAediting_177591 | chr2_47163981_- | SINE | Alu | AluYm1 |
CAediting_177592 | chr2_47164475_- | SINE | Alu | AluSx |
CAediting_177593 | chr2_47164485_- | SINE | Alu | AluSx |
CAediting_177594 | chr2_47164559_- | SINE | Alu | AluSx |
CAediting_177595 | chr2_47164570_- | SINE | Alu | AluSx |
CAediting_177596 | chr2_47167511_- | SINE | Alu | AluSx |
CAediting_177597 | chr2_47167562_- | SINE | Alu | AluSx |
CAediting_177598 | chr2_47167594_- | SINE | Alu | AluSx |
CAediting_177599 | chr2_47167653_- | SINE | Alu | AluSx |
CAediting_177600 | chr2_47167656_- | SINE | Alu | AluSx |
CAediting_177601 | chr2_47167830_- | SINE | Alu | FLAM_C |
CAediting_177602 | chr2_47167833_- | SINE | Alu | FLAM_C |
CAediting_177603 | chr2_47167900_- | SINE | Alu | FLAM_C |
CAediting_177604 | chr2_47167907_- | SINE | Alu | FLAM_C |
CAediting_177605 | chr2_47167923_- | SINE | Alu | FLAM_C |
CAediting_177606 | chr2_47168480_- | SINE | Alu | AluSp |
CAediting_177607 | chr2_47168504_- | SINE | Alu | AluSp |
CAediting_177608 | chr2_47168522_- | SINE | Alu | AluSp |
CAediting_177609 | chr2_47168547_- | SINE | Alu | AluSp |
CAediting_177610 | chr2_47168571_- | SINE | Alu | AluSp |
CAediting_177611 | chr2_47168573_- | SINE | Alu | AluSp |
CAediting_177612 | chr2_47168576_- | SINE | Alu | AluSp |
CAediting_177613 | chr2_47168611_- | SINE | Alu | AluSp |
CAediting_177614 | chr2_47168902_- | SINE | Alu | AluSz |
CAediting_177615 | chr2_47168915_- | SINE | Alu | AluSz |
CAediting_177616 | chr2_47168942_- | SINE | Alu | AluSz |
CAediting_177617 | chr2_47168954_- | SINE | Alu | AluSz |
CAediting_177618 | chr2_47168956_- | SINE | Alu | AluSz |
CAediting_177619 | chr2_47168966_- | SINE | Alu | AluSz |
CAediting_177620 | chr2_47168971_- | SINE | Alu | AluSz |
CAediting_177621 | chr2_47169359_- | SINE | Alu | AluJo |
CAediting_177622 | chr2_47169406_- | SINE | Alu | AluJo |
CAediting_177623 | chr2_47174290_- | SINE | Alu | AluJo |
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RNA A-to-I editing events in the alternative splicing sites for CALM2 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CALM2 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for CALM2 |
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The effects of the RNA editing to the miRNA binding sites for CALM2 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229413 | chr17_67471544_+ | ENSG00000143933.15 | ENST00000628793 | hsa-miR-548aa | 47160091 | 47160097 | 7mer-m8 | 47160090 | 47160119 | 148 | -12.98 |
CAediting_524911 | chr7_5495852_- | ENSG00000143933.15 | ENST00000628793 | hsa-miR-589-3p | 47160153 | 47160159 | 7mer-m8 | 47160152 | 47160175 | 150 | -14.85 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for CALM2 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000409563.4 | protein_coding | ![]() | ![]() |
ENST00000482532.4 | retained_intron | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_177596 | ENST00000409563.4 | chr2_47167511_- | -201.00 | -201.40 | -210.10 |
CAediting_177597 | ENST00000409563.4 | chr2_47167562_- | -205.00 | -201.40 | -210.10 |
CAediting_177598 | ENST00000409563.4 | chr2_47167594_- | -204.20 | -201.40 | -210.10 |
CAediting_177599 | ENST00000409563.4 | chr2_47167653_- | -205.10 | -201.40 | -210.10 |
CAediting_177600 | ENST00000409563.4 | chr2_47167656_- | -203.30 | -201.40 | -210.10 |
CAediting_177568 | ENST00000482532.4 | chr2_47163460_- | -594.40 | -590.60 | -625.10 |
CAediting_177569 | ENST00000482532.4 | chr2_47163471_- | -591.40 | -590.60 | -625.10 |
CAediting_177570 | ENST00000482532.4 | chr2_47163493_- | -591.70 | -590.60 | -625.10 |
CAediting_177571 | ENST00000482532.4 | chr2_47163498_- | -590.60 | -590.60 | -625.10 |
CAediting_177572 | ENST00000482532.4 | chr2_47163538_- | -590.80 | -590.60 | -625.10 |
CAediting_177573 | ENST00000482532.4 | chr2_47163539_- | -590.60 | -590.60 | -625.10 |
CAediting_177574 | ENST00000482532.4 | chr2_47163548_- | -591.10 | -590.60 | -625.10 |
CAediting_177575 | ENST00000482532.4 | chr2_47163570_- | -590.60 | -590.60 | -625.10 |
CAediting_177576 | ENST00000482532.4 | chr2_47163571_- | -591.60 | -590.60 | -625.10 |
CAediting_177577 | ENST00000482532.4 | chr2_47163597_- | -594.10 | -590.60 | -625.10 |
CAediting_177578 | ENST00000482532.4 | chr2_47163614_- | -590.80 | -590.60 | -625.10 |
CAediting_177579 | ENST00000482532.4 | chr2_47163635_- | -590.60 | -590.60 | -625.10 |
CAediting_177580 | ENST00000482532.4 | chr2_47163636_- | -590.30 | -590.60 | -625.10 |
CAediting_177581 | ENST00000482532.4 | chr2_47163639_- | -589.70 | -590.60 | -625.10 |
CAediting_177582 | ENST00000482532.4 | chr2_47163650_- | -590.60 | -590.60 | -625.10 |
CAediting_177583 | ENST00000482532.4 | chr2_47163664_- | -589.70 | -590.60 | -625.10 |
CAediting_177584 | ENST00000482532.4 | chr2_47163669_- | -594.60 | -590.60 | -625.10 |
CAediting_177585 | ENST00000482532.4 | chr2_47163678_- | -595.40 | -590.60 | -625.10 |
CAediting_177586 | ENST00000482532.4 | chr2_47163684_- | -593.20 | -590.60 | -625.10 |
CAediting_177587 | ENST00000482532.4 | chr2_47163704_- | -590.60 | -590.60 | -625.10 |
CAediting_177588 | ENST00000482532.4 | chr2_47163867_- | -597.20 | -590.60 | -625.10 |
CAediting_177589 | ENST00000482532.4 | chr2_47163897_- | -594.40 | -590.60 | -625.10 |
CAediting_177590 | ENST00000482532.4 | chr2_47163901_- | -589.90 | -590.60 | -625.10 |
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Relation with ADAR for CALM2 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for CALM2 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for CALM2 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CALM2 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
CALM2 | P0DP24 | DB11348 | Calcium Phosphate | Calmodulin-2 | SmallMoleculeDrug | approved |
CALM2 | P0DP24 | DB14481 | Calcium phosphate dihydrate | Calmodulin-2 | SmallMoleculeDrug | approved |
CALM2 | P0DP24 | DB11093 | Calcium citrate | Calmodulin-2 | SmallMoleculeDrug | approved|investigational |
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RelatedDiseases for CALM2 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
CALM2 | C4015695 | LONG QT SYNDROME 15 | 6 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
CALM2 | C0011570 | Mental Depression | 5 | PSYGENET |
CALM2 | C0011581 | Depressive disorder | 5 | PSYGENET |
CALM2 | C0005586 | Bipolar Disorder | 2 | PSYGENET |
CALM2 | C0035828 | Romano-Ward Syndrome | 2 | ORPHANET |
CALM2 | C0006868 | Cannabis Abuse | 1 | CTD_human |
CALM2 | C0006870 | Cannabis Dependence | 1 | CTD_human |
CALM2 | C0009171 | Cocaine Abuse | 1 | CTD_human |
CALM2 | C0018614 | Hashish Abuse | 1 | CTD_human |
CALM2 | C0024809 | Marijuana Abuse | 1 | CTD_human |
CALM2 | C0031391 | Phencyclidine Abuse | 1 | CTD_human |
CALM2 | C0236735 | Cannabis-Related Disorder | 1 | CTD_human |
CALM2 | C0236736 | Cocaine-Related Disorders | 1 | CTD_human |
CALM2 | C0236742 | Phencyclidine-Related Disorders | 1 | CTD_human |
CALM2 | C0588008 | Severe depression | 1 | PSYGENET |
CALM2 | C0600427 | Cocaine Dependence | 1 | CTD_human |
CALM2 | C1142166 | Brugada Syndrome (disorder) | 1 | ORPHANET |
CALM2 | C1631597 | VENTRICULAR TACHYCARDIA, CATECHOLAMINERGIC POLYMORPHIC, 1 (disorder) | 1 | ORPHANET |