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Editing gene: PNPLA3 (CAeditome ID:80339)

Gene summary for PNPLA3

Gene summary

Gene information	Gene symbol	PNPLA3
	Gene ID	80339
	Gene name	patatin like phospholipase domain containing 3
	Synonyms	ADPN\|C22orf20\|iPLA(2)epsilon
	Cytomap	22q13.31
	Type of gene	protein-coding
	Description	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3acylglycerol O-acyltransferaseacylglycerol transacylaseadiponutrincalcium-independent phospholipase A2-epsiloniPLA2-epsiloniPLA2epsilonlysophosphatidic acid acyltransferasepatatin-like phospholipa
	Modification date	20210518
	UniProtAcc	Q9NST1
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
PNPLA3	GO:0003841	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221
PNPLA3	GO:0004623	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	15364929
PNPLA3	GO:0004806	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	15364929
PNPLA3	GO:0004806	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	20034933
PNPLA3	GO:0004806	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221
PNPLA3	GO:0035727	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221
PNPLA3	GO:0036042	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221
PNPLA3	GO:0042171	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221
PNPLA3	GO:0051264	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	15364929
PNPLA3	GO:0051265	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	15364929
PNPLA3	GO:0001676	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221
PNPLA3	GO:0006650	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221
PNPLA3	GO:0006654	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221
PNPLA3	GO:0019432	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	15364929
PNPLA3	GO:0019432	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221
PNPLA3	GO:0019433	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	15364929
PNPLA3	GO:0019433	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221
PNPLA3	GO:0036153	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	24511104
PNPLA3	GO:0005811	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	20034933
PNPLA3	GO:0005811	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221
PNPLA3	GO:0005811	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	23398201
PNPLA3	GO:0016020	1-acylglycerol-3-phosphate O-acyltransferase PNPLA3	22560221

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RNA A-to-I events for PNPLA3

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000100344.9

RNA A-to-I editing events in Cancer.

CAediting_1491206(43925828, +), CAediting_1491207(43927267, +), CAediting_1491208(43933487, +), CAediting_1491209(43933490, +), CAediting_1491210(43933499, +), CAediting_1491211(43933504, +), CAediting_1491212(43933608, +), CAediting_1491213(43933609, +), CAediting_1491214(43933613, +), CAediting_1491215(43933621, +), CAediting_1491216(43934039, +), CAediting_1491217(43934061, +), CAediting_1491218(43934097, +), CAediting_1491219(43934102, +), CAediting_1491220(43934196, +), CAediting_1491221(43934209, +), CAediting_1491222(43934272, +), CAediting_1491223(43934296, +), CAediting_1491224(43940715, +), CAediting_1491225(43940886, +), CAediting_1491226(43941040, +), CAediting_1491227(43941099, +), CAediting_1491228(43941104, +), CAediting_1491229(43942726, +), CAediting_1491230(43942754, +), CAediting_1491231(43942820, +), CAediting_1491232(43942850, +), CAediting_1491233(43943315, +), CAediting_1491234(43943317, +), CAediting_1491235(43943875, +), CAediting_1491236(43943918, +), CAediting_1491237(43943997, +), CAediting_1491238(43944008, +), CAediting_1491239(43944047, +), CAediting_1491240(43944048, +), CAediting_1491241(43947095, +), CAediting_1491242(43947103, +), CAediting_1491243(43947109, +), CAediting_1491244(43947125, +), CAediting_1491245(43947126, +), CAediting_1491246(43947134, +), CAediting_1491247(43947144, +), CAediting_1491248(43947149, +), CAediting_1491249(43947157, +), CAediting_1491250(43947158, +), CAediting_1491251(43947163, +), CAediting_1491252(43947175, +), CAediting_1491253(43947177, +), CAediting_1491254(43947181, +), CAediting_1491255(43947182, +), CAediting_1491256(43947183, +), CAediting_1491257(43947198, +), CAediting_1491258(43947203, +), CAediting_1491259(43947207, +), CAediting_1491260(43947209, +), CAediting_1491261(43947212, +), CAediting_1491262(43947238, +), CAediting_1491263(43947239, +), CAediting_1491264(43947244, +), CAediting_1491265(43947280, +), CAediting_1491266(43947284, +), CAediting_1491267(43947287, +), CAediting_1491268(43947293, +), CAediting_1491269(43947304, +), CAediting_1491270(43947309, +), CAediting_1491271(43947316, +), CAediting_1491272(43947329, +), CAediting_1491273(43947338, +), CAediting_1491274(43947349, +), CAediting_1491275(43947350, +), CAediting_1491276(43947362, +), CAediting_1491277(43947425, +), CAediting_1491278(43949335, +), CAediting_1491279(43949355, +), CAediting_1491280(43949380, +), CAediting_1491281(43949390, +), CAediting_1491282(43949393, +), CAediting_1491283(43949398, +), CAediting_1491284(43949400, +), CAediting_1491285(43949401, +), CAediting_1491286(43949411, +), CAediting_1491287(43949414, +), CAediting_1491288(43949416, +), CAediting_1491289(43949417, +), CAediting_1491290(43949436, +), CAediting_1491291(43949437, +), CAediting_1491292(43949438, +), CAediting_1491293(43949454, +), CAediting_1491294(43949462, +), CAediting_1491295(43949490, +), CAediting_1491296(43949492, +), CAediting_1491297(43949503, +), CAediting_1491298(43949506, +), CAediting_1491299(43949516, +), CAediting_1491300(43949517, +), CAediting_1491301(43949535, +), CAediting_1491302(43949561, +), CAediting_1491303(43949567, +), CAediting_1491304(43949574, +), CAediting_1491305(43949586, +), CAediting_1491306(43949588, +), CAediting_1491307(43949591, +), CAediting_1491308(43949595, +), CAediting_1491309(43949614, +), CAediting_1491310(43949628, +), CAediting_1491311(43949635, +), CAediting_1491312(43949642, +), CAediting_1491313(43949665, +), CAediting_1491314(43949685, +), CAediting_1491315(43949687, +), CAediting_1491316(43949808, +), CAediting_1491317(43949816, +), CAediting_1491318(43949817, +), CAediting_1491319(43949822, +), CAediting_1491320(43949838, +), CAediting_1491321(43949847, +), CAediting_1491322(43949852, +), CAediting_1491323(43949857, +), CAediting_1491324(43949862, +), CAediting_1491325(43949875, +), CAediting_1491326(43949876, +), CAediting_1491327(43949885, +), CAediting_1491328(43949886, +), CAediting_1491329(43949895, +), CAediting_1491330(43949896, +), CAediting_1491331(43949907, +), CAediting_1491332(43949911, +), CAediting_1491333(43949913, +), CAediting_1491334(43949914, +), CAediting_1491335(43949916, +), CAediting_1491336(43949918, +), CAediting_1491337(43949919, +), CAediting_1491338(43949920, +), CAediting_1491339(43949921, +), CAediting_1491340(43949925, +), CAediting_1491341(43949951, +), CAediting_1491342(43949952, +), CAediting_1491343(43949974, +), CAediting_1491344(43949978, +), CAediting_1491345(43949981, +), CAediting_1491346(43949984, +), CAediting_1491347(43949987, +), CAediting_1491348(43949992, +), CAediting_1491349(43949993, +), CAediting_1491350(43949997, +), CAediting_1491351(43950000, +), CAediting_1491352(43950013, +), CAediting_1491353(43950017, +), CAediting_1491354(43950024, +), CAediting_1491355(43950032, +), CAediting_1491356(43950037, +), CAediting_1491357(43950042, +), CAediting_1491358(43950054, +), CAediting_1491359(43950060, +), CAediting_1491360(43950074, +), CAediting_1491361(43950075, +), CAediting_1491362(43950077, +), CAediting_1491363(43950081, +), CAediting_1491364(43950147, +), CAediting_1491365(43950153, +), CAediting_1491366(43950159, +), CAediting_1491367(43950162, +), CAediting_1491368(43950178, +), CAediting_1491369(43950187, +), CAediting_1491370(43950208, +), CAediting_1491371(43950211, +), CAediting_1491372(43950225, +), CAediting_1491373(43950233, +), CAediting_1491374(43950234, +), CAediting_1491375(43950235, +), CAediting_1491376(43950247, +), CAediting_1491377(43950640, +), CAediting_1491378(43950656, +), CAediting_1491379(43950660, +), CAediting_1491380(43950667, +), CAediting_1491381(43950670, +), CAediting_1491382(43950680, +), CAediting_1491383(43950681, +), CAediting_1491384(43950684, +), CAediting_1491385(43950686, +), CAediting_1491386(43950691, +), CAediting_1491387(43950696, +), CAediting_1491388(43950702, +), CAediting_1491389(43950703, +), CAediting_1491390(43950716, +), CAediting_1491391(43950717, +), CAediting_1491392(43950721, +), CAediting_1491393(43950729, +), CAediting_1491394(43950734, +), CAediting_1491395(43950742, +), CAediting_1491396(43950743, +), CAediting_1491397(43950746, +), CAediting_1491398(43950752, +), CAediting_1491399(43950753, +), CAediting_1491400(43950756, +), CAediting_1491401(43950758, +), CAediting_1491402(43950772, +), CAediting_1491403(43950778, +), CAediting_1491404(43950782, +), CAediting_1491405(43950795, +), CAediting_1491406(43950797, +), CAediting_1491407(43950799, +), CAediting_1491408(43950801, +), CAediting_1491409(43950821, +), CAediting_1491410(43950834, +), CAediting_1491411(43950847, +), CAediting_1491412(43950851, +), CAediting_1491413(43950872, +), CAediting_1491414(43950873, +), CAediting_1491415(43950886, +), CAediting_1491416(43950888, +), CAediting_1491417(43950902, +), CAediting_1491418(43951043, +), CAediting_1491419(43951053, +), CAediting_1491420(43951061, +), CAediting_1491421(43951062, +), CAediting_1491422(43951067, +), CAediting_1491423(43951070, +), CAediting_1491424(43951088, +), CAediting_1491425(43951094, +), CAediting_1491426(43951097, +), CAediting_1491427(43951101, +), CAediting_1491428(43951102, +), CAediting_1491429(43951132, +), CAediting_1491430(43951137, +), CAediting_1491431(43951143, +), CAediting_1491432(43951146, +), CAediting_1491433(43951147, +), CAediting_1491434(43951148, +), CAediting_1491435(43951149, +), CAediting_1491436(43951150, +), CAediting_1491437(43951151, +), CAediting_1491438(43951156, +), CAediting_1491439(43951157, +), CAediting_1491440(43951158, +), CAediting_1491441(43951159, +), CAediting_1491442(43951162, +), CAediting_1491443(43951170, +), CAediting_1491444(43951188, +), CAediting_1491445(43951189, +), CAediting_1491446(43951194, +), CAediting_1491447(43951197, +), CAediting_1491448(43951201, +), CAediting_1491449(43951211, +), CAediting_1491450(43951220, +), CAediting_1491451(43951221, +), CAediting_1491452(43951224, +), CAediting_1491453(43951229, +), CAediting_1491454(43951230, +), CAediting_1491455(43951237, +), CAediting_1491456(43951250, +), CAediting_1491457(43951276, +), CAediting_1491458(43951281, +), CAediting_1491459(43951282, +), CAediting_1491460(43951283, +), CAediting_1491461(43951284, +), CAediting_1491462(43951285, +), CAediting_1491463(43951289, +), CAediting_1491464(43951293, +), CAediting_1491465(43957606, +),

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RNA editing positional annotations for PNPLA3 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1491206	chr22_43925828_+	ncRNA_intronic
CAediting_1491207	chr22_43927267_+	ncRNA_intronic
CAediting_1491208	chr22_43933487_+	ncRNA_intronic
CAediting_1491209	chr22_43933490_+	ncRNA_intronic
CAediting_1491210	chr22_43933499_+	ncRNA_intronic
CAediting_1491211	chr22_43933504_+	ncRNA_intronic
CAediting_1491212	chr22_43933608_+	ncRNA_intronic
CAediting_1491213	chr22_43933609_+	ncRNA_intronic
CAediting_1491214	chr22_43933613_+	ncRNA_intronic
CAediting_1491215	chr22_43933621_+	ncRNA_intronic
CAediting_1491216	chr22_43934039_+	ncRNA_intronic
CAediting_1491217	chr22_43934061_+	ncRNA_intronic
CAediting_1491218	chr22_43934097_+	ncRNA_intronic
CAediting_1491219	chr22_43934102_+	ncRNA_intronic
CAediting_1491220	chr22_43934196_+	ncRNA_intronic
CAediting_1491221	chr22_43934209_+	ncRNA_intronic
CAediting_1491222	chr22_43934272_+	ncRNA_intronic
CAediting_1491223	chr22_43934296_+	ncRNA_intronic
CAediting_1491224	chr22_43940715_+	intronic
CAediting_1491225	chr22_43940886_+	intronic
CAediting_1491226	chr22_43941040_+	intronic
CAediting_1491227	chr22_43941099_+	intronic
CAediting_1491228	chr22_43941104_+	intronic
CAediting_1491229	chr22_43942726_+	intronic
CAediting_1491230	chr22_43942754_+	intronic
CAediting_1491231	chr22_43942820_+	intronic
CAediting_1491232	chr22_43942850_+	intronic
CAediting_1491233	chr22_43943315_+	intronic
CAediting_1491234	chr22_43943317_+	intronic
CAediting_1491235	chr22_43943875_+	intronic
CAediting_1491236	chr22_43943918_+	intronic
CAediting_1491237	chr22_43943997_+	intronic
CAediting_1491238	chr22_43944008_+	intronic
CAediting_1491239	chr22_43944047_+	intronic
CAediting_1491240	chr22_43944048_+	intronic
CAediting_1491241	chr22_43947095_+	UTR3
CAediting_1491242	chr22_43947103_+	UTR3
CAediting_1491243	chr22_43947109_+	UTR3
CAediting_1491244	chr22_43947125_+	UTR3
CAediting_1491245	chr22_43947126_+	UTR3
CAediting_1491246	chr22_43947134_+	UTR3
CAediting_1491247	chr22_43947144_+	UTR3
CAediting_1491248	chr22_43947149_+	UTR3
CAediting_1491249	chr22_43947157_+	UTR3
CAediting_1491250	chr22_43947158_+	UTR3
CAediting_1491251	chr22_43947163_+	UTR3
CAediting_1491252	chr22_43947175_+	UTR3
CAediting_1491253	chr22_43947177_+	UTR3
CAediting_1491254	chr22_43947181_+	UTR3
CAediting_1491255	chr22_43947182_+	UTR3
CAediting_1491256	chr22_43947183_+	UTR3
CAediting_1491257	chr22_43947198_+	UTR3
CAediting_1491258	chr22_43947203_+	UTR3
CAediting_1491259	chr22_43947207_+	UTR3
CAediting_1491260	chr22_43947209_+	UTR3
CAediting_1491261	chr22_43947212_+	UTR3
CAediting_1491262	chr22_43947238_+	UTR3
CAediting_1491263	chr22_43947239_+	UTR3
CAediting_1491264	chr22_43947244_+	UTR3
CAediting_1491265	chr22_43947280_+	UTR3
CAediting_1491266	chr22_43947284_+	UTR3
CAediting_1491267	chr22_43947287_+	UTR3
CAediting_1491268	chr22_43947293_+	UTR3
CAediting_1491269	chr22_43947304_+	UTR3
CAediting_1491270	chr22_43947309_+	UTR3
CAediting_1491271	chr22_43947316_+	UTR3
CAediting_1491272	chr22_43947329_+	UTR3
CAediting_1491273	chr22_43947338_+	UTR3
CAediting_1491274	chr22_43947349_+	UTR3
CAediting_1491275	chr22_43947350_+	UTR3
CAediting_1491276	chr22_43947362_+	UTR3
CAediting_1491277	chr22_43947425_+	UTR3
CAediting_1491278	chr22_43949335_+	intronic
CAediting_1491279	chr22_43949355_+	intronic
CAediting_1491280	chr22_43949380_+	intronic
CAediting_1491281	chr22_43949390_+	intronic
CAediting_1491282	chr22_43949393_+	intronic
CAediting_1491283	chr22_43949398_+	intronic
CAediting_1491284	chr22_43949400_+	intronic
CAediting_1491285	chr22_43949401_+	intronic
CAediting_1491286	chr22_43949411_+	intronic
CAediting_1491287	chr22_43949414_+	intronic
CAediting_1491288	chr22_43949416_+	intronic
CAediting_1491289	chr22_43949417_+	intronic
CAediting_1491290	chr22_43949436_+	intronic
CAediting_1491291	chr22_43949437_+	intronic
CAediting_1491292	chr22_43949438_+	intronic
CAediting_1491293	chr22_43949454_+	intronic
CAediting_1491294	chr22_43949462_+	intronic
CAediting_1491295	chr22_43949490_+	intronic
CAediting_1491296	chr22_43949492_+	intronic
CAediting_1491297	chr22_43949503_+	intronic
CAediting_1491298	chr22_43949506_+	intronic
CAediting_1491299	chr22_43949516_+	intronic
CAediting_1491300	chr22_43949517_+	intronic
CAediting_1491301	chr22_43949535_+	intronic
CAediting_1491302	chr22_43949561_+	intronic
CAediting_1491303	chr22_43949567_+	intronic
CAediting_1491304	chr22_43949574_+	intronic
CAediting_1491305	chr22_43949586_+	intronic
CAediting_1491306	chr22_43949588_+	intronic
CAediting_1491307	chr22_43949591_+	intronic
CAediting_1491308	chr22_43949595_+	intronic
CAediting_1491309	chr22_43949614_+	intronic
CAediting_1491310	chr22_43949628_+	intronic
CAediting_1491311	chr22_43949635_+	intronic
CAediting_1491312	chr22_43949642_+	intronic
CAediting_1491313	chr22_43949665_+	intronic
CAediting_1491314	chr22_43949685_+	intronic
CAediting_1491315	chr22_43949687_+	intronic
CAediting_1491316	chr22_43949808_+	intronic
CAediting_1491317	chr22_43949816_+	intronic
CAediting_1491318	chr22_43949817_+	intronic
CAediting_1491319	chr22_43949822_+	intronic
CAediting_1491320	chr22_43949838_+	intronic
CAediting_1491321	chr22_43949847_+	intronic
CAediting_1491322	chr22_43949852_+	intronic
CAediting_1491323	chr22_43949857_+	intronic
CAediting_1491324	chr22_43949862_+	intronic
CAediting_1491325	chr22_43949875_+	intronic
CAediting_1491326	chr22_43949876_+	intronic
CAediting_1491327	chr22_43949885_+	intronic
CAediting_1491328	chr22_43949886_+	intronic
CAediting_1491329	chr22_43949895_+	intronic
CAediting_1491330	chr22_43949896_+	intronic
CAediting_1491331	chr22_43949907_+	intronic
CAediting_1491332	chr22_43949911_+	intronic
CAediting_1491333	chr22_43949913_+	intronic
CAediting_1491334	chr22_43949914_+	intronic
CAediting_1491335	chr22_43949916_+	intronic
CAediting_1491336	chr22_43949918_+	intronic
CAediting_1491337	chr22_43949919_+	intronic
CAediting_1491338	chr22_43949920_+	intronic
CAediting_1491339	chr22_43949921_+	intronic
CAediting_1491340	chr22_43949925_+	intronic
CAediting_1491341	chr22_43949951_+	intronic
CAediting_1491342	chr22_43949952_+	intronic
CAediting_1491343	chr22_43949974_+	intronic
CAediting_1491344	chr22_43949978_+	intronic
CAediting_1491345	chr22_43949981_+	intronic
CAediting_1491346	chr22_43949984_+	intronic
CAediting_1491347	chr22_43949987_+	intronic
CAediting_1491348	chr22_43949992_+	intronic
CAediting_1491349	chr22_43949993_+	intronic
CAediting_1491350	chr22_43949997_+	intronic
CAediting_1491351	chr22_43950000_+	intronic
CAediting_1491352	chr22_43950013_+	intronic
CAediting_1491353	chr22_43950017_+	intronic
CAediting_1491354	chr22_43950024_+	intronic
CAediting_1491355	chr22_43950032_+	intronic
CAediting_1491356	chr22_43950037_+	intronic
CAediting_1491357	chr22_43950042_+	intronic
CAediting_1491358	chr22_43950054_+	intronic
CAediting_1491359	chr22_43950060_+	intronic
CAediting_1491360	chr22_43950074_+	intronic
CAediting_1491361	chr22_43950075_+	intronic
CAediting_1491362	chr22_43950077_+	intronic
CAediting_1491363	chr22_43950081_+	intronic
CAediting_1491364	chr22_43950147_+	intronic
CAediting_1491365	chr22_43950153_+	intronic
CAediting_1491366	chr22_43950159_+	intronic
CAediting_1491367	chr22_43950162_+	intronic
CAediting_1491368	chr22_43950178_+	intronic
CAediting_1491369	chr22_43950187_+	intronic
CAediting_1491370	chr22_43950208_+	intronic
CAediting_1491371	chr22_43950211_+	intronic
CAediting_1491372	chr22_43950225_+	intronic
CAediting_1491373	chr22_43950233_+	intronic
CAediting_1491374	chr22_43950234_+	intronic
CAediting_1491375	chr22_43950235_+	intronic
CAediting_1491376	chr22_43950247_+	intronic
CAediting_1491377	chr22_43950640_+	intronic
CAediting_1491378	chr22_43950656_+	intronic
CAediting_1491379	chr22_43950660_+	intronic
CAediting_1491380	chr22_43950667_+	intronic
CAediting_1491381	chr22_43950670_+	intronic
CAediting_1491382	chr22_43950680_+	intronic
CAediting_1491383	chr22_43950681_+	intronic
CAediting_1491384	chr22_43950684_+	intronic
CAediting_1491385	chr22_43950686_+	intronic
CAediting_1491386	chr22_43950691_+	intronic
CAediting_1491387	chr22_43950696_+	intronic
CAediting_1491388	chr22_43950702_+	intronic
CAediting_1491389	chr22_43950703_+	intronic
CAediting_1491390	chr22_43950716_+	intronic
CAediting_1491391	chr22_43950717_+	intronic
CAediting_1491392	chr22_43950721_+	intronic
CAediting_1491393	chr22_43950729_+	intronic
CAediting_1491394	chr22_43950734_+	intronic
CAediting_1491395	chr22_43950742_+	intronic
CAediting_1491396	chr22_43950743_+	intronic
CAediting_1491397	chr22_43950746_+	intronic
CAediting_1491398	chr22_43950752_+	intronic
CAediting_1491399	chr22_43950753_+	intronic
CAediting_1491400	chr22_43950756_+	intronic
CAediting_1491401	chr22_43950758_+	intronic
CAediting_1491402	chr22_43950772_+	intronic
CAediting_1491403	chr22_43950778_+	intronic
CAediting_1491404	chr22_43950782_+	intronic
CAediting_1491405	chr22_43950795_+	intronic
CAediting_1491406	chr22_43950797_+	intronic
CAediting_1491407	chr22_43950799_+	intronic
CAediting_1491408	chr22_43950801_+	intronic
CAediting_1491409	chr22_43950821_+	intronic
CAediting_1491410	chr22_43950834_+	intronic
CAediting_1491411	chr22_43950847_+	intronic
CAediting_1491412	chr22_43950851_+	intronic
CAediting_1491413	chr22_43950872_+	intronic
CAediting_1491414	chr22_43950873_+	intronic
CAediting_1491415	chr22_43950886_+	intronic
CAediting_1491416	chr22_43950888_+	intronic
CAediting_1491417	chr22_43950902_+	intronic
CAediting_1491418	chr22_43951043_+	intronic
CAediting_1491419	chr22_43951053_+	intronic
CAediting_1491420	chr22_43951061_+	intronic
CAediting_1491421	chr22_43951062_+	intronic
CAediting_1491422	chr22_43951067_+	intronic
CAediting_1491423	chr22_43951070_+	intronic
CAediting_1491424	chr22_43951088_+	intronic
CAediting_1491425	chr22_43951094_+	intronic
CAediting_1491426	chr22_43951097_+	intronic
CAediting_1491427	chr22_43951101_+	intronic
CAediting_1491428	chr22_43951102_+	intronic
CAediting_1491429	chr22_43951132_+	intronic
CAediting_1491430	chr22_43951137_+	intronic
CAediting_1491431	chr22_43951143_+	intronic
CAediting_1491432	chr22_43951146_+	intronic
CAediting_1491433	chr22_43951147_+	intronic
CAediting_1491434	chr22_43951148_+	intronic
CAediting_1491435	chr22_43951149_+	intronic
CAediting_1491436	chr22_43951150_+	intronic
CAediting_1491437	chr22_43951151_+	intronic
CAediting_1491438	chr22_43951156_+	intronic
CAediting_1491439	chr22_43951157_+	intronic
CAediting_1491440	chr22_43951158_+	intronic
CAediting_1491441	chr22_43951159_+	intronic
CAediting_1491442	chr22_43951162_+	intronic
CAediting_1491443	chr22_43951170_+	intronic
CAediting_1491444	chr22_43951188_+	intronic
CAediting_1491445	chr22_43951189_+	intronic
CAediting_1491446	chr22_43951194_+	intronic
CAediting_1491447	chr22_43951197_+	intronic
CAediting_1491448	chr22_43951201_+	intronic
CAediting_1491449	chr22_43951211_+	intronic
CAediting_1491450	chr22_43951220_+	intronic
CAediting_1491451	chr22_43951221_+	intronic
CAediting_1491452	chr22_43951224_+	intronic
CAediting_1491453	chr22_43951229_+	intronic
CAediting_1491454	chr22_43951230_+	intronic
CAediting_1491455	chr22_43951237_+	intronic
CAediting_1491456	chr22_43951250_+	intronic
CAediting_1491457	chr22_43951276_+	intronic
CAediting_1491458	chr22_43951281_+	intronic
CAediting_1491459	chr22_43951282_+	intronic
CAediting_1491460	chr22_43951283_+	intronic
CAediting_1491461	chr22_43951284_+	intronic
CAediting_1491462	chr22_43951285_+	intronic
CAediting_1491463	chr22_43951289_+	intronic
CAediting_1491464	chr22_43951293_+	intronic
CAediting_1491465	chr22_43957606_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1491207	chr22_43927267_+	SINE	Alu	AluJb
CAediting_1491208	chr22_43933487_+	SINE	Alu	AluJr
CAediting_1491209	chr22_43933490_+	SINE	Alu	AluJr
CAediting_1491210	chr22_43933499_+	SINE	Alu	AluJr
CAediting_1491211	chr22_43933504_+	SINE	Alu	AluJr
CAediting_1491212	chr22_43933608_+	SINE	Alu	AluJr
CAediting_1491213	chr22_43933609_+	SINE	Alu	AluJr
CAediting_1491214	chr22_43933613_+	SINE	Alu	AluJr
CAediting_1491215	chr22_43933621_+	SINE	Alu	AluJr
CAediting_1491216	chr22_43934039_+	SINE	Alu	AluSx1
CAediting_1491217	chr22_43934061_+	SINE	Alu	AluSx1
CAediting_1491218	chr22_43934097_+	SINE	Alu	AluSx1
CAediting_1491219	chr22_43934102_+	SINE	Alu	AluSx1
CAediting_1491220	chr22_43934196_+	SINE	Alu	AluSx1
CAediting_1491221	chr22_43934209_+	SINE	Alu	AluSx1
CAediting_1491222	chr22_43934272_+	SINE	Alu	AluSx1
CAediting_1491223	chr22_43934296_+	SINE	Alu	AluSx1
CAediting_1491224	chr22_43940715_+	SINE	Alu	AluSx
CAediting_1491225	chr22_43940886_+	SINE	Alu	AluSg
CAediting_1491226	chr22_43941040_+	SINE	Alu	AluSg
CAediting_1491227	chr22_43941099_+	SINE	Alu	AluSg
CAediting_1491228	chr22_43941104_+	SINE	Alu	AluSg
CAediting_1491229	chr22_43942726_+	SINE	Alu	AluJb
CAediting_1491230	chr22_43942754_+	SINE	Alu	AluJb
CAediting_1491231	chr22_43942820_+	SINE	Alu	AluJb
CAediting_1491232	chr22_43942850_+	SINE	Alu	AluJb
CAediting_1491235	chr22_43943875_+	SINE	Alu	AluSg
CAediting_1491236	chr22_43943918_+	SINE	Alu	AluSg
CAediting_1491237	chr22_43943997_+	SINE	Alu	AluSg
CAediting_1491238	chr22_43944008_+	SINE	Alu	AluSg
CAediting_1491239	chr22_43944047_+	SINE	Alu	AluSg
CAediting_1491240	chr22_43944048_+	SINE	Alu	AluSg
CAediting_1491241	chr22_43947095_+	SINE	Alu	AluSp
CAediting_1491242	chr22_43947103_+	SINE	Alu	AluSp
CAediting_1491243	chr22_43947109_+	SINE	Alu	AluSp
CAediting_1491244	chr22_43947125_+	SINE	Alu	AluSp
CAediting_1491245	chr22_43947126_+	SINE	Alu	AluSp
CAediting_1491246	chr22_43947134_+	SINE	Alu	AluSp
CAediting_1491247	chr22_43947144_+	SINE	Alu	AluSp
CAediting_1491248	chr22_43947149_+	SINE	Alu	AluSp
CAediting_1491249	chr22_43947157_+	SINE	Alu	AluSp
CAediting_1491250	chr22_43947158_+	SINE	Alu	AluSp
CAediting_1491251	chr22_43947163_+	SINE	Alu	AluSp
CAediting_1491252	chr22_43947175_+	SINE	Alu	AluSp
CAediting_1491253	chr22_43947177_+	SINE	Alu	AluSp
CAediting_1491254	chr22_43947181_+	SINE	Alu	AluSp
CAediting_1491255	chr22_43947182_+	SINE	Alu	AluSp
CAediting_1491256	chr22_43947183_+	SINE	Alu	AluSp
CAediting_1491257	chr22_43947198_+	SINE	Alu	AluSp
CAediting_1491258	chr22_43947203_+	SINE	Alu	AluSp
CAediting_1491259	chr22_43947207_+	SINE	Alu	AluSp
CAediting_1491260	chr22_43947209_+	SINE	Alu	AluSp
CAediting_1491261	chr22_43947212_+	SINE	Alu	AluSp
CAediting_1491262	chr22_43947238_+	SINE	Alu	AluSp
CAediting_1491263	chr22_43947239_+	SINE	Alu	AluSp
CAediting_1491264	chr22_43947244_+	SINE	Alu	AluSp
CAediting_1491265	chr22_43947280_+	SINE	Alu	AluSp
CAediting_1491266	chr22_43947284_+	SINE	Alu	AluSp
CAediting_1491267	chr22_43947287_+	SINE	Alu	AluSp
CAediting_1491268	chr22_43947293_+	SINE	Alu	AluSp
CAediting_1491269	chr22_43947304_+	SINE	Alu	AluSp
CAediting_1491270	chr22_43947309_+	SINE	Alu	AluSp
CAediting_1491271	chr22_43947316_+	SINE	Alu	AluSp
CAediting_1491272	chr22_43947329_+	SINE	Alu	AluSp
CAediting_1491273	chr22_43947338_+	SINE	Alu	AluSp
CAediting_1491274	chr22_43947349_+	SINE	Alu	AluSp
CAediting_1491275	chr22_43947350_+	SINE	Alu	AluSp
CAediting_1491276	chr22_43947362_+	SINE	Alu	AluSp
CAediting_1491278	chr22_43949335_+	SINE	Alu	AluSp
CAediting_1491279	chr22_43949355_+	SINE	Alu	AluSp
CAediting_1491280	chr22_43949380_+	SINE	Alu	AluSp
CAediting_1491281	chr22_43949390_+	SINE	Alu	AluSp
CAediting_1491282	chr22_43949393_+	SINE	Alu	AluSp
CAediting_1491283	chr22_43949398_+	SINE	Alu	AluSp
CAediting_1491284	chr22_43949400_+	SINE	Alu	AluSp
CAediting_1491285	chr22_43949401_+	SINE	Alu	AluSp
CAediting_1491286	chr22_43949411_+	SINE	Alu	AluSp
CAediting_1491287	chr22_43949414_+	SINE	Alu	AluSp
CAediting_1491288	chr22_43949416_+	SINE	Alu	AluSp
CAediting_1491289	chr22_43949417_+	SINE	Alu	AluSp
CAediting_1491290	chr22_43949436_+	SINE	Alu	AluSp
CAediting_1491291	chr22_43949437_+	SINE	Alu	AluSp
CAediting_1491292	chr22_43949438_+	SINE	Alu	AluSp
CAediting_1491293	chr22_43949454_+	SINE	Alu	AluSp
CAediting_1491294	chr22_43949462_+	SINE	Alu	AluSp
CAediting_1491295	chr22_43949490_+	SINE	Alu	AluSp
CAediting_1491296	chr22_43949492_+	SINE	Alu	AluSp
CAediting_1491297	chr22_43949503_+	SINE	Alu	AluSp
CAediting_1491298	chr22_43949506_+	SINE	Alu	AluSp
CAediting_1491299	chr22_43949516_+	SINE	Alu	AluSp
CAediting_1491300	chr22_43949517_+	SINE	Alu	AluSp
CAediting_1491301	chr22_43949535_+	SINE	Alu	AluSp
CAediting_1491302	chr22_43949561_+	SINE	Alu	AluSp
CAediting_1491303	chr22_43949567_+	SINE	Alu	AluSp
CAediting_1491304	chr22_43949574_+	SINE	Alu	AluSp
CAediting_1491305	chr22_43949586_+	SINE	Alu	AluSp
CAediting_1491306	chr22_43949588_+	SINE	Alu	AluSp
CAediting_1491307	chr22_43949591_+	SINE	Alu	AluSp
CAediting_1491308	chr22_43949595_+	SINE	Alu	AluSp
CAediting_1491309	chr22_43949614_+	SINE	Alu	AluSp
CAediting_1491310	chr22_43949628_+	SINE	Alu	AluSp
CAediting_1491311	chr22_43949635_+	SINE	Alu	AluSp
CAediting_1491312	chr22_43949642_+	SINE	Alu	AluSp
CAediting_1491316	chr22_43949808_+	SINE	Alu	AluSx1
CAediting_1491317	chr22_43949816_+	SINE	Alu	AluSx1
CAediting_1491318	chr22_43949817_+	SINE	Alu	AluSx1
CAediting_1491319	chr22_43949822_+	SINE	Alu	AluSx1
CAediting_1491320	chr22_43949838_+	SINE	Alu	AluSx1
CAediting_1491321	chr22_43949847_+	SINE	Alu	AluSx1
CAediting_1491322	chr22_43949852_+	SINE	Alu	AluSx1
CAediting_1491323	chr22_43949857_+	SINE	Alu	AluSx1
CAediting_1491324	chr22_43949862_+	SINE	Alu	AluSx1
CAediting_1491325	chr22_43949875_+	SINE	Alu	AluSx1
CAediting_1491326	chr22_43949876_+	SINE	Alu	AluSx1
CAediting_1491327	chr22_43949885_+	SINE	Alu	AluSx1
CAediting_1491328	chr22_43949886_+	SINE	Alu	AluSx1
CAediting_1491329	chr22_43949895_+	SINE	Alu	AluSx1
CAediting_1491330	chr22_43949896_+	SINE	Alu	AluSx1
CAediting_1491331	chr22_43949907_+	SINE	Alu	AluSx1
CAediting_1491332	chr22_43949911_+	SINE	Alu	AluSx1
CAediting_1491333	chr22_43949913_+	SINE	Alu	AluSx1
CAediting_1491334	chr22_43949914_+	SINE	Alu	AluSx1
CAediting_1491335	chr22_43949916_+	SINE	Alu	AluSx1
CAediting_1491336	chr22_43949918_+	SINE	Alu	AluSx1
CAediting_1491337	chr22_43949919_+	SINE	Alu	AluSx1
CAediting_1491338	chr22_43949920_+	SINE	Alu	AluSx1
CAediting_1491339	chr22_43949921_+	SINE	Alu	AluSx1
CAediting_1491340	chr22_43949925_+	SINE	Alu	AluSx1
CAediting_1491341	chr22_43949951_+	SINE	Alu	AluSx1
CAediting_1491342	chr22_43949952_+	SINE	Alu	AluSx1
CAediting_1491343	chr22_43949974_+	SINE	Alu	AluSx1
CAediting_1491344	chr22_43949978_+	SINE	Alu	AluSx1
CAediting_1491345	chr22_43949981_+	SINE	Alu	AluSx1
CAediting_1491346	chr22_43949984_+	SINE	Alu	AluSx1
CAediting_1491347	chr22_43949987_+	SINE	Alu	AluSx1
CAediting_1491348	chr22_43949992_+	SINE	Alu	AluSx1
CAediting_1491349	chr22_43949993_+	SINE	Alu	AluSx1
CAediting_1491350	chr22_43949997_+	SINE	Alu	AluSx1
CAediting_1491351	chr22_43950000_+	SINE	Alu	AluSx1
CAediting_1491352	chr22_43950013_+	SINE	Alu	AluSx1
CAediting_1491353	chr22_43950017_+	SINE	Alu	AluSx1
CAediting_1491354	chr22_43950024_+	SINE	Alu	AluSx1
CAediting_1491355	chr22_43950032_+	SINE	Alu	AluSx1
CAediting_1491356	chr22_43950037_+	SINE	Alu	AluSx1
CAediting_1491357	chr22_43950042_+	SINE	Alu	AluSx1
CAediting_1491358	chr22_43950054_+	SINE	Alu	AluSx1
CAediting_1491359	chr22_43950060_+	SINE	Alu	AluSx1
CAediting_1491360	chr22_43950074_+	SINE	Alu	AluSx1
CAediting_1491361	chr22_43950075_+	SINE	Alu	AluSx1
CAediting_1491362	chr22_43950077_+	SINE	Alu	AluSx1
CAediting_1491363	chr22_43950081_+	SINE	Alu	AluSx1
CAediting_1491364	chr22_43950147_+	SINE	Alu	AluJo
CAediting_1491365	chr22_43950153_+	SINE	Alu	AluJo
CAediting_1491366	chr22_43950159_+	SINE	Alu	AluJo
CAediting_1491367	chr22_43950162_+	SINE	Alu	AluJo
CAediting_1491368	chr22_43950178_+	SINE	Alu	AluJo
CAediting_1491369	chr22_43950187_+	SINE	Alu	AluJo
CAediting_1491370	chr22_43950208_+	SINE	Alu	AluJo
CAediting_1491371	chr22_43950211_+	SINE	Alu	AluJo
CAediting_1491372	chr22_43950225_+	Retroposon	SVA	SVA_F
CAediting_1491373	chr22_43950233_+	Retroposon	SVA	SVA_F
CAediting_1491374	chr22_43950234_+	Retroposon	SVA	SVA_F
CAediting_1491375	chr22_43950235_+	Retroposon	SVA	SVA_F
CAediting_1491376	chr22_43950247_+	Retroposon	SVA	SVA_F
CAediting_1491377	chr22_43950640_+	SINE	Alu	AluJo
CAediting_1491378	chr22_43950656_+	SINE	Alu	AluJo
CAediting_1491379	chr22_43950660_+	SINE	Alu	AluJo
CAediting_1491380	chr22_43950667_+	SINE	Alu	AluJo
CAediting_1491381	chr22_43950670_+	SINE	Alu	AluJo
CAediting_1491382	chr22_43950680_+	SINE	Alu	AluJo
CAediting_1491383	chr22_43950681_+	SINE	Alu	AluJo
CAediting_1491384	chr22_43950684_+	SINE	Alu	AluJo
CAediting_1491385	chr22_43950686_+	SINE	Alu	AluJo
CAediting_1491386	chr22_43950691_+	SINE	Alu	AluJo
CAediting_1491387	chr22_43950696_+	SINE	Alu	AluJo
CAediting_1491388	chr22_43950702_+	SINE	Alu	AluJo
CAediting_1491389	chr22_43950703_+	SINE	Alu	AluJo
CAediting_1491390	chr22_43950716_+	SINE	Alu	AluJo
CAediting_1491391	chr22_43950717_+	SINE	Alu	AluJo
CAediting_1491392	chr22_43950721_+	SINE	Alu	AluJo
CAediting_1491393	chr22_43950729_+	SINE	Alu	AluJo
CAediting_1491394	chr22_43950734_+	SINE	Alu	AluJo
CAediting_1491395	chr22_43950742_+	SINE	Alu	AluJo
CAediting_1491396	chr22_43950743_+	SINE	Alu	AluJo
CAediting_1491397	chr22_43950746_+	SINE	Alu	AluJo
CAediting_1491398	chr22_43950752_+	SINE	Alu	AluJo
CAediting_1491399	chr22_43950753_+	SINE	Alu	AluJo
CAediting_1491400	chr22_43950756_+	SINE	Alu	AluJo
CAediting_1491401	chr22_43950758_+	SINE	Alu	AluJo
CAediting_1491402	chr22_43950772_+	SINE	Alu	AluJo
CAediting_1491403	chr22_43950778_+	SINE	Alu	AluJo
CAediting_1491404	chr22_43950782_+	SINE	Alu	AluJo
CAediting_1491405	chr22_43950795_+	SINE	Alu	AluJo
CAediting_1491406	chr22_43950797_+	SINE	Alu	AluJo
CAediting_1491407	chr22_43950799_+	SINE	Alu	AluJo
CAediting_1491408	chr22_43950801_+	SINE	Alu	AluJo
CAediting_1491409	chr22_43950821_+	SINE	Alu	AluJo
CAediting_1491410	chr22_43950834_+	SINE	Alu	AluJo
CAediting_1491411	chr22_43950847_+	SINE	Alu	AluJo
CAediting_1491412	chr22_43950851_+	SINE	Alu	AluJo
CAediting_1491413	chr22_43950872_+	SINE	Alu	AluJo
CAediting_1491414	chr22_43950873_+	SINE	Alu	AluJo
CAediting_1491415	chr22_43950886_+	SINE	Alu	AluJo
CAediting_1491416	chr22_43950888_+	SINE	Alu	AluJo
CAediting_1491417	chr22_43950902_+	SINE	Alu	AluJo
CAediting_1491418	chr22_43951043_+	SINE	Alu	AluSx1
CAediting_1491419	chr22_43951053_+	SINE	Alu	AluSx1
CAediting_1491420	chr22_43951061_+	SINE	Alu	AluSx1
CAediting_1491421	chr22_43951062_+	SINE	Alu	AluSx1
CAediting_1491422	chr22_43951067_+	SINE	Alu	AluSx1
CAediting_1491423	chr22_43951070_+	SINE	Alu	AluSx1
CAediting_1491424	chr22_43951088_+	SINE	Alu	AluSx1
CAediting_1491425	chr22_43951094_+	SINE	Alu	AluSx1
CAediting_1491426	chr22_43951097_+	SINE	Alu	AluSx1
CAediting_1491427	chr22_43951101_+	SINE	Alu	AluSx1
CAediting_1491428	chr22_43951102_+	SINE	Alu	AluSx1
CAediting_1491429	chr22_43951132_+	SINE	Alu	AluSx1
CAediting_1491430	chr22_43951137_+	SINE	Alu	AluSx1
CAediting_1491431	chr22_43951143_+	SINE	Alu	AluSx1
CAediting_1491432	chr22_43951146_+	SINE	Alu	AluSx1
CAediting_1491433	chr22_43951147_+	SINE	Alu	AluSx1
CAediting_1491434	chr22_43951148_+	SINE	Alu	AluSx1
CAediting_1491435	chr22_43951149_+	SINE	Alu	AluSx1
CAediting_1491436	chr22_43951150_+	SINE	Alu	AluSx1
CAediting_1491437	chr22_43951151_+	SINE	Alu	AluSx1
CAediting_1491438	chr22_43951156_+	SINE	Alu	AluSx1
CAediting_1491439	chr22_43951157_+	SINE	Alu	AluSx1
CAediting_1491440	chr22_43951158_+	SINE	Alu	AluSx1
CAediting_1491441	chr22_43951159_+	SINE	Alu	AluSx1
CAediting_1491442	chr22_43951162_+	SINE	Alu	AluSx1
CAediting_1491443	chr22_43951170_+	SINE	Alu	AluSx1
CAediting_1491444	chr22_43951188_+	SINE	Alu	AluSx1
CAediting_1491445	chr22_43951189_+	SINE	Alu	AluSx1
CAediting_1491446	chr22_43951194_+	SINE	Alu	AluSx1
CAediting_1491447	chr22_43951197_+	SINE	Alu	AluSx1
CAediting_1491448	chr22_43951201_+	SINE	Alu	AluSx1
CAediting_1491449	chr22_43951211_+	SINE	Alu	AluSx1
CAediting_1491450	chr22_43951220_+	SINE	Alu	AluSx1
CAediting_1491451	chr22_43951221_+	SINE	Alu	AluSx1
CAediting_1491452	chr22_43951224_+	SINE	Alu	AluSx1
CAediting_1491453	chr22_43951229_+	SINE	Alu	AluSx1
CAediting_1491454	chr22_43951230_+	SINE	Alu	AluSx1
CAediting_1491455	chr22_43951237_+	SINE	Alu	AluSx1
CAediting_1491456	chr22_43951250_+	SINE	Alu	AluSx1
CAediting_1491457	chr22_43951276_+	SINE	Alu	AluSx1
CAediting_1491458	chr22_43951281_+	SINE	Alu	AluSx1
CAediting_1491459	chr22_43951282_+	SINE	Alu	AluSx1
CAediting_1491460	chr22_43951283_+	SINE	Alu	AluSx1
CAediting_1491461	chr22_43951284_+	SINE	Alu	AluSx1
CAediting_1491462	chr22_43951285_+	SINE	Alu	AluSx1
CAediting_1491463	chr22_43951289_+	SINE	Alu	AluSx1
CAediting_1491464	chr22_43951293_+	SINE	Alu	AluSx1
CAediting_1491465	chr22_43957606_+	SINE	Alu	AluSz

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RNA A-to-I editing events in the alternative splicing sites for PNPLA3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000100344.9.PNPLA3.

Correlation between RNA A-to-I editing and PSI for ENSG00000100344.9.PNPLA3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PNPLA3

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

BRCA.CAediting_1491340.ENSG00000100344.PNPLA3.png
Soverview

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Protein coding region RNA A-to-I editings for PNPLA3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for PNPLA3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000100344.9	ENST00000406117	hsa-miR-624-3p	43940081	43940087	7mer-1a	43940070	43940087	143	-17.62
CAediting_1399425	chr20_1392958_-	ENSG00000100344.9	ENST00000406117	hsa-miR-6869-5p	43940048	43940054	7mer-m8	43940034	43940055	146	-16.44
CAediting_604450	chr7_133034877_-	ENSG00000100344.9	ENST00000423180	hsa-miR-3654	43946558	43946565	8mer-1a	43946548	43946565	148	-20.24

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PNPLA3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for PNPLA3

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LIHC	CAediting_1491289	chr22_43949417_+	.	.	0.03824833282788	0.239799507741531	.	.
BRCA	CAediting_1491290	chr22_43949436_+	0.00972296747725321	0.285706811713054	.	.	.	.
LIHC	CAediting_1491290	chr22_43949436_+	0.0428711594741664	0.144434411221226	.	.	.	.
SKCM	CAediting_1491290	chr22_43949436_+	0.00428341422929013	0.363702824567681	0.0325435944436601	0.276385525418454	.	.
BRCA	CAediting_1491291	chr22_43949437_+	0.00617277150221175	0.251781840934108	.	.	.	.
LIHC	CAediting_1491291	chr22_43949437_+	0.00179881221668283	0.203452783990742	.	.	.	.
SKCM	CAediting_1491291	chr22_43949437_+	6.50669024079329e-05	0.379591605592326	.	.	.	.
LIHC	CAediting_1491301	chr22_43949535_+	0.0173758558269692	0.179631757687345	.	.	.	.
LIHC	CAediting_1491303	chr22_43949567_+	0.0155076695563402	0.215229223034694	.	.	.	.
LIHC	CAediting_1491305	chr22_43949586_+	0.00303471823411482	0.209637925722962	.	.	.	.
LIHC	CAediting_1491309	chr22_43949614_+	0.0162337694383451	0.144575965854977	.	.	.	.
SKCM	CAediting_1491309	chr22_43949614_+	2.0169435359435e-07	0.453204631531769	.	.	.	.
LIHC	CAediting_1491323	chr22_43949857_+	.	.	.	.	0.0113131829220599	0.261594099468704
BRCA	CAediting_1491324	chr22_43949862_+	0.00163298261762504	0.293046907790105	.	.	.	.
SKCM	CAediting_1491324	chr22_43949862_+	0.000896682618921255	0.325465776660776	0.0352538105900098	0.209772354213426	.	.
LIHC	CAediting_1491349	chr22_43949993_+	0.0217466118280517	0.241670270224758	.	.	.	.
BRCA	CAediting_1491350	chr22_43949997_+	0.012344155747169	0.31856360738111	.	.	.	.
LIHC	CAediting_1491350	chr22_43949997_+	0.00827029137465725	0.193629163183492	.	.	.	.
SKCM	CAediting_1491350	chr22_43949997_+	0.000522771773454991	0.460395487527461	.	.	.	.
BRCA	CAediting_1491372	chr22_43950225_+	0.040684998440515	0.206107147464265	.	.	.	.
BRCA	CAediting_1491390	chr22_43950716_+	0.0398787382146863	0.207979367240254	.	.	.	.
LIHC	CAediting_1491390	chr22_43950716_+	3.46482735767132e-06	0.274717955651272	.	.	.	.
SKCM	CAediting_1491390	chr22_43950716_+	0.000112430137145501	0.425932519738185	.	.	.	.
BRCA	CAediting_1491391	chr22_43950717_+	0.00262905196701002	0.230662607108123	.	.	.	.
LIHC	CAediting_1491391	chr22_43950717_+	4.04573613254982e-05	0.223938151763789	.	.	.	.
SKCM	CAediting_1491391	chr22_43950717_+	2.41921835282771e-06	0.398556018431201	.	.	.	.
BRCA	CAediting_1491393	chr22_43950729_+	.	.	0.000223831133069976	0.459196909118595	.	.
LIHC	CAediting_1491393	chr22_43950729_+	0.00179289319814856	0.207519509330104	.	.	.	.
SKCM	CAediting_1491393	chr22_43950729_+	.	.	0.00117680309977026	0.445787946836808	.	.
BRCA	CAediting_1491396	chr22_43950743_+	0.000862727145278171	0.302714083982698	.	.	.	.
LIHC	CAediting_1491396	chr22_43950743_+	0.00060228378732393	0.194710839629809	.	.	.	.
UCEC	CAediting_1491396	chr22_43950743_+	0.0240460215771588	0.269531499124958	.	.	.	.
SKCM	CAediting_1491396	chr22_43950743_+	0.000941139745583068	0.344664355599491	.	.	.	.
BRCA	CAediting_1491397	chr22_43950746_+	0.0055882138384925	0.276555984565526	.	.	.	.
LIHC	CAediting_1491397	chr22_43950746_+	0.00303117061644899	0.172920642290677	.	.	.	.
SKCM	CAediting_1491397	chr22_43950746_+	0.000184812545081141	0.421389436698317	.	.	.	.
SKCM	CAediting_1491400	chr22_43950756_+	0.0485927189973309	0.178216024414851	.	.	.	.
LIHC	CAediting_1491409	chr22_43950821_+	2.2349343293934e-09	0.378308773206869	.	.	.	.
LIHC	CAediting_1491410	chr22_43950834_+	0.00193613552105246	0.196312243141113	.	.	.	.
LIHC	CAediting_1491411	chr22_43950847_+	1.94131439243562e-10	0.334046859417175	.	.	.	.
CESC	CAediting_1491411	chr22_43950847_+	0.00852576806549748	0.269873075785938	.	.	.	.
UCEC	CAediting_1491411	chr22_43950847_+	0.0291690805298579	0.19287018353265	.	.	.	.
SKCM	CAediting_1491411	chr22_43950847_+	9.78459251311272e-08	0.372249054440131	.	.	.	.
TGCT	CAediting_1491411	chr22_43950847_+	0.000100449683500206	0.402682641120735	.	.	.	.
LIHC	CAediting_1491413	chr22_43950872_+	0.0228547438490015	0.196523681351792	.	.	.	.
BRCA	CAediting_1491414	chr22_43950873_+	0.00075736729461349	0.311002038808658	.	.	.	.
LIHC	CAediting_1491414	chr22_43950873_+	1.48418679446787e-05	0.239150258458352	.	.	.	.
SKCM	CAediting_1491414	chr22_43950873_+	1.30377720593376e-05	0.483088055210013	.	.	.	.
BRCA	CAediting_1491415	chr22_43950886_+	2.2345271239235e-06	0.431722966666911	.	.	.	.
LIHC	CAediting_1491415	chr22_43950886_+	5.24075290743404e-10	0.336786161596647	.	.	.	.
SKCM	CAediting_1491415	chr22_43950886_+	2.69852094242376e-06	0.514797036454196	.	.	.	.
LIHC	CAediting_1491420	chr22_43951061_+	6.51734983133766e-09	0.334654652213525	.	.	.	.
LIHC	CAediting_1491421	chr22_43951062_+	0.00695138684415686	0.187529438205846	.	.	.	.
LIHC	CAediting_1491422	chr22_43951067_+	5.53004485193313e-06	0.369653085387778	.	.	.	.
UCEC	CAediting_1491425	chr22_43951094_+	0.0411961084031665	0.195008931984956	.	.	.	.
SKCM	CAediting_1491425	chr22_43951094_+	0.0230049557942337	0.215672435741087	.	.	.	.
TGCT	CAediting_1491425	chr22_43951094_+	0.00890556211016498	0.352680867919127	.	.	.	.
UCEC	CAediting_1491426	chr22_43951097_+	.	.	.	.	0.0373866725977074	0.289479118387523
SKCM	CAediting_1491427	chr22_43951101_+	0.0398939018742877	0.189463844444734	.	.	.	.
LIHC	CAediting_1491428	chr22_43951102_+	0.00134437088449023	0.182204327281445	.	.	.	.
SKCM	CAediting_1491428	chr22_43951102_+	0.00159169129598599	0.35388993696115	.	.	.	.
LIHC	CAediting_1491435	chr22_43951149_+	.	.	0.00795832128451515	0.231815934171744	.	.
SKCM	CAediting_1491443	chr22_43951170_+	0.0278811438352406	0.242913456576624	.	.	.	.
UCEC	CAediting_1491444	chr22_43951188_+	.	.	0.0472026835829535	0.160184642017556	.	.
SKCM	CAediting_1491444	chr22_43951188_+	0.0399224217345191	0.209007577092319	.	.	.	.
SKCM	CAediting_1491445	chr22_43951189_+	0.000460749515362153	0.373812028679078	.	.	.	.
LIHC	CAediting_1491457	chr22_43951276_+	.	.	.	.	0.0117389350248506	0.30618390546108

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Relation with cancer stages for PNPLA3

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_1491262	chr22_43947238_+	0.0195632565014111	0.270909898388269
BRCA	pathologic_stage	CAediting_1491263	chr22_43947239_+	0.00610055984791117	0.32698316486994
BRCA	pathologic_stage	CAediting_1491396	chr22_43950743_+	0.0375428027873941	0.195066591027455
BRCA	pathologic_stage	CAediting_1491414	chr22_43950873_+	0.00350238349370127	0.274888656566269
BRCA	pathologic_stage	CAediting_1491427	chr22_43951101_+	0.0227613237525678	0.189056569055957
CESC	clinical_stage	CAediting_1491391	chr22_43950717_+	0.0435778916825286	0.275735138485955
LIHC	pathologic_stage	CAediting_1491318	chr22_43949817_+	0.00299228759294623	-0.393058108481814
LIHC	pathologic_stage	CAediting_1491411	chr22_43950847_+	0.0247849079468697	-0.124510526579455
LIHC	pathologic_stage	CAediting_1491444	chr22_43951188_+	0.0228810267171089	0.132234046329482
SKCM	pathologic_stage	CAediting_1491443	chr22_43951170_+	0.0192074291140544	-0.275406579203669
TGCT	pathologic_stage	CAediting_1491427	chr22_43951101_+	0.0402434653685531	-0.412877455558162

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Relation with survival for PNPLA3

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LIHC	CAediting_1491330	chr22_43949896_+	0.0195754695412743	0.0322361	2698.36
LIHC	CAediting_1491444	chr22_43951188_+	0.00842342080952485	0.034128	9.9585

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RelatedDrugs for PNPLA3

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for PNPLA3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
PNPLA3	C2750440	FATTY LIVER DISEASE, NONALCOHOLIC, SUSCEPTIBILITY TO, 1	4	UNIPROT
PNPLA3	C0400966	Non-alcoholic Fatty Liver Disease	3	CTD_human
PNPLA3	C3241937	Nonalcoholic Steatohepatitis	3	CTD_human
PNPLA3	C0023891	Liver Cirrhosis, Alcoholic	2	CTD_human
PNPLA3	C0015695	Fatty Liver	1	CTD_human
PNPLA3	C0023896	Alcoholic Liver Diseases	1	CTD_human
PNPLA3	C2711227	Steatohepatitis	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene