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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: RPF1 (CAeditome ID:80135) |
Gene summary for RPF1 |
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Gene information | Gene symbol | RPF1 | Gene ID | 80135 |
Gene name | ribosome production factor 1 homolog | |
Synonyms | BXDC5 | |
Cytomap | 1p22.3 | |
Type of gene | protein-coding | |
Description | ribosome production factor 12310066N05RikRNA processing factor 1 (RPF1)brix domain containing 5brix domain-containing protein 5ribosome biogenesis protein RPF1 | |
Modification date | 20210518 | |
UniProtAcc | Q9H9Y2 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
RPF1 | GO:0003723 | Ribosome production factor 1 | 11864606 |
RPF1 | GO:0005730 | Ribosome production factor 1 | 0000052 |
RPF1 | GO:0005730 | Ribosome production factor 1 | 12429849 |
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RNA A-to-I events for RPF1 |
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CAediting_76986(84479461, +), CAediting_76987(84497146, +), |
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RNA editing positional annotations for RPF1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_76986 | chr1_84479461_+ | exonic |
CAediting_76987 | chr1_84497146_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_76987 | chr1_84497146_+ | SINE | Alu | AluSc8 |
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RNA A-to-I editing events in the alternative splicing sites for RPF1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPF1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for RPF1 |
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The effects of the RNA editing to the miRNA binding sites for RPF1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_524911 | chr7_5495852_- | ENSG00000117133.9 | ENST00000370656 | hsa-miR-589-3p | 84483296 | 84483302 | 7mer-m8 | 84483279 | 84483303 | 154 | -15.12 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for RPF1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000370654.5 | protein_coding | ![]() | ![]() |
ENST00000370656.4 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_76986 | ENST00000370654.5 | chr1_84479461_+ | -358.90 | -358.90 | -358.90 |
CAediting_76986 | ENST00000370656.4 | chr1_84479461_+ | -200.20 | -199.90 | -200.20 |
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Relation with ADAR for RPF1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for RPF1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for RPF1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for RPF1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RPF1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |