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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: C10orf88 (CAeditome ID:80007) |
Gene summary for C10orf88 |
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Gene information | Gene symbol | C10orf88 | Gene ID | 80007 |
Gene name | chromosome 10 open reading frame 88 | |
Synonyms | PAAT | |
Cytomap | 10q26.13 | |
Type of gene | protein-coding | |
Description | ATPase PAATprotein associated with ABC transportersuncharacterized protein C10orf88 | |
Modification date | 20210518 | |
UniProtAcc | Q9H8K7 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for C10orf88 |
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CAediting_787675(122931553, -), CAediting_787676(122931564, -), CAediting_787677(122931617, -), CAediting_787678(122948701, -), CAediting_787679(122952985, -), |
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RNA editing positional annotations for C10orf88 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_787675 | chr10_122931553_- | ncRNA_exonic |
CAediting_787676 | chr10_122931564_- | ncRNA_exonic |
CAediting_787677 | chr10_122931617_- | ncRNA_exonic |
CAediting_787678 | chr10_122948701_- | exonic |
CAediting_787679 | chr10_122952985_- | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
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RNA A-to-I editing events in the alternative splicing sites for C10orf88 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for C10orf88 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for C10orf88 |
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The effects of the RNA editing to the miRNA binding sites for C10orf88 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for C10orf88 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for C10orf88 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for C10orf88 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for C10orf88 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for C10orf88 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for C10orf88 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |