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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: WDR76 (CAeditome ID:79968)

Gene summary for WDR76

check button Gene summary
Gene informationGene symbol

WDR76

Gene ID

79968

Gene nameWD repeat domain 76
SynonymsCDW14
Cytomap

15q15.3

Type of geneprotein-coding
DescriptionWD repeat-containing protein 76
Modification date20210518
UniProtAcc

Q9H967

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
WDR76

GO:0005634

WD repeat-containing protein 76

27248496


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RNA A-to-I events for WDR76

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000092470.10

check button RNA A-to-I editing events in Cancer.
CAediting_1034410(43830407, +), CAediting_1034411(43830433, +), CAediting_1034412(43830442, +), CAediting_1034413(43831259, +), CAediting_1034414(43831261, +), CAediting_1034415(43832261, +), CAediting_1034416(43836774, +), CAediting_1034417(43836830, +), CAediting_1034418(43836941, +), CAediting_1034419(43836943, +), CAediting_1034420(43841462, +), CAediting_1034421(43844831, +), CAediting_1034422(43844834, +), CAediting_1034423(43845079, +), CAediting_1034424(43845211, +), CAediting_1034425(43845223, +), CAediting_1034426(43846347, +), CAediting_1034427(43846355, +), CAediting_1034428(43846386, +), CAediting_1034429(43846402, +), CAediting_1034430(43846424, +), CAediting_1034431(43846760, +), CAediting_1034432(43846858, +), CAediting_1034433(43846861, +), CAediting_1034434(43846867, +), CAediting_1034435(43846875, +), CAediting_1034436(43846901, +), CAediting_1034437(43846902, +), CAediting_1034438(43846942, +), CAediting_1034439(43846947, +), CAediting_1034440(43847578, +), CAediting_1034441(43847792, +), CAediting_1034442(43847831, +), CAediting_1034443(43847974, +), CAediting_1034444(43847979, +), CAediting_1034445(43847991, +), CAediting_1034446(43848013, +), CAediting_1034447(43848038, +), CAediting_1034448(43848047, +), CAediting_1034449(43848080, +), CAediting_1034450(43848101, +), CAediting_1034451(43848158, +), CAediting_1034452(43849638, +), CAediting_1034453(43851793, +), CAediting_1034454(43852264, +), CAediting_1034455(43852301, +), CAediting_1034456(43854301, +), CAediting_1034457(43854419, +), CAediting_1034458(43854435, +), CAediting_1034459(43857734, +), CAediting_1034460(43857768, +), CAediting_1034461(43858480, +), CAediting_1034462(43858489, +), CAediting_1034463(43866159, +), CAediting_1034464(43866185, +), CAediting_1034465(43866203, +), CAediting_1034466(43866677, +), CAediting_1034467(43866701, +), CAediting_1034468(43866706, +), CAediting_1034469(43866707, +), CAediting_1034470(43866726, +), CAediting_1034471(43866727, +), CAediting_1034472(43866756, +), CAediting_1034473(43866772, +), CAediting_1034474(43866792, +), CAediting_1034475(43866802, +), CAediting_1034476(43866808, +), CAediting_1034477(43866811, +), CAediting_1034478(43866849, +), CAediting_1034479(43866862, +), CAediting_1034480(43866888, +), CAediting_1034481(43866890, +), CAediting_1034482(43866898, +),

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RNA editing positional annotations for WDR76 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_1034463chr15_43866159_+nonsynonymous SNVENST00000263795.9c.A1648Gp.R550GDBD
CAediting_1034463chr15_43866159_+nonsynonymous SNVENST00000381246.5c.A1456Gp.R486GDBD
CAediting_1034465chr15_43866203_+nonsynonymous SNVENST00000263795.9c.A1692Gp.I564MDBN
CAediting_1034465chr15_43866203_+nonsynonymous SNVENST00000381246.5c.A1500Gp.I500MDBN

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1034410chr15_43830407_+intronic
CAediting_1034411chr15_43830433_+intronic
CAediting_1034412chr15_43830442_+intronic
CAediting_1034413chr15_43831259_+intronic
CAediting_1034414chr15_43831261_+intronic
CAediting_1034415chr15_43832261_+intronic
CAediting_1034416chr15_43836774_+intronic
CAediting_1034417chr15_43836830_+intronic
CAediting_1034418chr15_43836941_+intronic
CAediting_1034419chr15_43836943_+intronic
CAediting_1034420chr15_43841462_+intronic
CAediting_1034421chr15_43844831_+intronic
CAediting_1034422chr15_43844834_+intronic
CAediting_1034423chr15_43845079_+intronic
CAediting_1034424chr15_43845211_+intronic
CAediting_1034425chr15_43845223_+intronic
CAediting_1034426chr15_43846347_+intronic
CAediting_1034427chr15_43846355_+intronic
CAediting_1034428chr15_43846386_+intronic
CAediting_1034429chr15_43846402_+intronic
CAediting_1034430chr15_43846424_+intronic
CAediting_1034431chr15_43846760_+intronic
CAediting_1034432chr15_43846858_+intronic
CAediting_1034433chr15_43846861_+intronic
CAediting_1034434chr15_43846867_+intronic
CAediting_1034435chr15_43846875_+intronic
CAediting_1034436chr15_43846901_+intronic
CAediting_1034437chr15_43846902_+intronic
CAediting_1034438chr15_43846942_+intronic
CAediting_1034439chr15_43846947_+intronic
CAediting_1034440chr15_43847578_+intronic
CAediting_1034441chr15_43847792_+intronic
CAediting_1034442chr15_43847831_+intronic
CAediting_1034443chr15_43847974_+intronic
CAediting_1034444chr15_43847979_+intronic
CAediting_1034445chr15_43847991_+intronic
CAediting_1034446chr15_43848013_+intronic
CAediting_1034447chr15_43848038_+intronic
CAediting_1034448chr15_43848047_+intronic
CAediting_1034449chr15_43848080_+intronic
CAediting_1034450chr15_43848101_+intronic
CAediting_1034451chr15_43848158_+intronic
CAediting_1034452chr15_43849638_+intronic
CAediting_1034453chr15_43851793_+intronic
CAediting_1034454chr15_43852264_+intronic
CAediting_1034455chr15_43852301_+intronic
CAediting_1034456chr15_43854301_+intronic
CAediting_1034457chr15_43854419_+intronic
CAediting_1034458chr15_43854435_+intronic
CAediting_1034459chr15_43857734_+intronic
CAediting_1034460chr15_43857768_+intronic
CAediting_1034461chr15_43858480_+intronic
CAediting_1034462chr15_43858489_+intronic
CAediting_1034463chr15_43866159_+exonic
CAediting_1034464chr15_43866185_+exonic
CAediting_1034465chr15_43866203_+exonic
CAediting_1034466chr15_43866677_+ncRNA_exonic
CAediting_1034467chr15_43866701_+ncRNA_exonic
CAediting_1034468chr15_43866706_+ncRNA_exonic
CAediting_1034469chr15_43866707_+ncRNA_exonic
CAediting_1034470chr15_43866726_+ncRNA_exonic
CAediting_1034471chr15_43866727_+ncRNA_exonic
CAediting_1034472chr15_43866756_+ncRNA_exonic
CAediting_1034473chr15_43866772_+ncRNA_exonic
CAediting_1034474chr15_43866792_+ncRNA_exonic
CAediting_1034475chr15_43866802_+ncRNA_exonic
CAediting_1034476chr15_43866808_+ncRNA_exonic
CAediting_1034477chr15_43866811_+ncRNA_exonic
CAediting_1034478chr15_43866849_+ncRNA_exonic
CAediting_1034479chr15_43866862_+ncRNA_exonic
CAediting_1034480chr15_43866888_+ncRNA_exonic
CAediting_1034481chr15_43866890_+ncRNA_exonic
CAediting_1034482chr15_43866898_+ncRNA_exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1034410chr15_43830407_+SINEAluAluSp
CAediting_1034411chr15_43830433_+SINEAluAluSp
CAediting_1034412chr15_43830442_+SINEAluAluSp
CAediting_1034413chr15_43831259_+SINEAluAluJo
CAediting_1034414chr15_43831261_+SINEAluAluJo
CAediting_1034415chr15_43832261_+SINEAluAluJr
CAediting_1034416chr15_43836774_+SINEAluAluSp
CAediting_1034417chr15_43836830_+SINEAluAluSp
CAediting_1034418chr15_43836941_+SINEAluAluSp
CAediting_1034419chr15_43836943_+SINEAluAluSp
CAediting_1034420chr15_43841462_+SINEAluAluY
CAediting_1034421chr15_43844831_+SINEAluAluY
CAediting_1034422chr15_43844834_+SINEAluAluY
CAediting_1034423chr15_43845079_+SINEAluAluYc
CAediting_1034424chr15_43845211_+SINEAluAluYc
CAediting_1034425chr15_43845223_+SINEAluAluYc
CAediting_1034426chr15_43846347_+SINEAluAluJo
CAediting_1034427chr15_43846355_+SINEAluAluJo
CAediting_1034428chr15_43846386_+SINEAluAluJo
CAediting_1034429chr15_43846402_+SINEAluAluJo
CAediting_1034430chr15_43846424_+SINEAluAluJo
CAediting_1034431chr15_43846760_+SINEAluAluSp
CAediting_1034432chr15_43846858_+SINEAluAluSp
CAediting_1034433chr15_43846861_+SINEAluAluSp
CAediting_1034434chr15_43846867_+SINEAluAluSp
CAediting_1034435chr15_43846875_+SINEAluAluSp
CAediting_1034436chr15_43846901_+SINEAluAluSp
CAediting_1034437chr15_43846902_+SINEAluAluSp
CAediting_1034438chr15_43846942_+SINEAluAluSp
CAediting_1034439chr15_43846947_+SINEAluAluSp
CAediting_1034440chr15_43847578_+SINEAluAluSg7
CAediting_1034441chr15_43847792_+SINEAluAluSz
CAediting_1034442chr15_43847831_+SINEAluAluSz
CAediting_1034443chr15_43847974_+SINEAluAluJo
CAediting_1034444chr15_43847979_+SINEAluAluJo
CAediting_1034445chr15_43847991_+SINEAluAluJo
CAediting_1034446chr15_43848013_+SINEAluAluJo
CAediting_1034447chr15_43848038_+SINEAluAluJo
CAediting_1034448chr15_43848047_+SINEAluAluJo
CAediting_1034449chr15_43848080_+SINEAluAluJo
CAediting_1034450chr15_43848101_+SINEAluAluJo
CAediting_1034451chr15_43848158_+SINEAluAluJo
CAediting_1034452chr15_43849638_+SINEAluAluSg7
CAediting_1034453chr15_43851793_+SINEAluAluJb
CAediting_1034454chr15_43852264_+SINEAluAluSq2
CAediting_1034455chr15_43852301_+SINEAluAluSq2
CAediting_1034456chr15_43854301_+SINEAluAluSz
CAediting_1034457chr15_43854419_+SINEAluAluSz
CAediting_1034458chr15_43854435_+SINEAluAluSz
CAediting_1034459chr15_43857734_+SINEAluAluSz
CAediting_1034460chr15_43857768_+SINEAluAluSz
CAediting_1034461chr15_43858480_+SINEAluAluSp
CAediting_1034462chr15_43858489_+SINEAluAluSp
CAediting_1034466chr15_43866677_+SINEAluAluSq2
CAediting_1034467chr15_43866701_+SINEAluAluSq2
CAediting_1034468chr15_43866706_+SINEAluAluSq2
CAediting_1034469chr15_43866707_+SINEAluAluSq2
CAediting_1034470chr15_43866726_+SINEAluAluSq2
CAediting_1034471chr15_43866727_+SINEAluAluSq2
CAediting_1034472chr15_43866756_+SINEAluAluSq2
CAediting_1034473chr15_43866772_+SINEAluAluSq2
CAediting_1034474chr15_43866792_+SINEAluAluSq2
CAediting_1034475chr15_43866802_+SINEAluAluSq2
CAediting_1034476chr15_43866808_+SINEAluAluSq2
CAediting_1034477chr15_43866811_+SINEAluAluSq2
CAediting_1034478chr15_43866849_+SINEAluAluSq2
CAediting_1034479chr15_43866862_+SINEAluAluSq2
CAediting_1034480chr15_43866888_+SINEAluAluSq2
CAediting_1034481chr15_43866890_+SINEAluAluSq2
CAediting_1034482chr15_43866898_+SINEAluAluSq2

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RNA A-to-I editing events in the alternative splicing sites for WDR76

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000092470.10.WDR76.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000092470.10.WDR76.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for WDR76

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for WDR76

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for WDR76

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1034471chr15_43866727_+ENSG00000092470.10ENST00000381246hsa-miR-453943866721438667266mer4386670843866727141.00-21.18
CAediting_1034471chr15_43866727_+ENSG00000092470.10ENST00000381246hsa-miR-607843866723438667308mer-1a4386671243866730149.00-21.50
CAediting_1034472chr15_43866756_+ENSG00000092470.10ENST00000381246hsa-miR-4691-3p43866753438667597mer-m84386673643866760150.00-26.36
CAediting_1034473chr15_43866772_+ENSG00000092470.10ENST00000381246hsa-miR-6720-3p43866766438667727mer-m84386675243866773148.00-18.90
CAediting_1034475chr15_43866802_+ENSG00000092470.10ENST00000381246hsa-miR-480143866797438668026mer4386678043866803150.00-18.45
CAediting_1034478chr15_43866849_+ENSG00000092470.10ENST00000381246hsa-miR-4740-3p43866843438668497mer-m84386682843866850149.00-25.38
CAediting_1034480chr15_43866888_+ENSG00000092470.10ENST00000381246hsa-miR-516b-5p43866882438668898mer-1a4386686943866889151.00-17.94
CAediting_1034480chr15_43866888_+ENSG00000092470.10ENST00000381246hsa-miR-516b-5p43866882438668898mer-1a4386686943866889151.00-17.94
CAediting_1034481chr15_43866890_+ENSG00000092470.10ENST00000381246hsa-miR-6782-3p43866885438668917mer-m84386687043866892145.00-15.18
CAediting_1034482chr15_43866898_+ENSG00000092470.10ENST00000381246hsa-miR-797743866892438668987mer-m84386688243866899140.00-13.07
CAediting_1034467chr15_43866701_+ENSG00000092470.10ENST00000381246hsa-miR-428543866697438667037mer-m84386668743866704148.00-22.26
CAediting_1034469chr15_43866707_+ENSG00000092470.10ENST00000381246hsa-miR-485-5p43866704438667107mer-m84386669143866711153.00-17.86
CAediting_1034469chr15_43866707_+ENSG00000092470.10ENST00000381246hsa-miR-60443866702438667087mer-m84386669043866709152.00-25.85
CAediting_1034469chr15_43866707_+ENSG00000092470.10ENST00000381246hsa-miR-6884-5p43866704438667107mer-m84386669343866711145.00-22.71

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1034473chr15_43866772_+ENSG00000092470.10ENST00000381246hsa-miR-1271-3p43866766438667727mer-m84386675443866773155-21.49
CAediting_1034479chr15_43866862_+ENSG00000092470.10ENST00000381246hsa-miR-3622a-3p43866859438668668mer-1a4386684543866866144-17.54
CAediting_1034473chr15_43866772_+ENSG00000092470.10ENST00000381246hsa-miR-366543866770438667767mer-m84386676043866777145-16.92
CAediting_1034477chr15_43866811_+ENSG00000092470.10ENST00000381246hsa-miR-3675-3p43866809438668157mer-m84386679543866816145-12.58
CAediting_1034468chr15_43866706_+ENSG00000092470.10ENST00000381246hsa-miR-377-5p43866704438667107mer-m84386669043866711155-19.92
CAediting_1034469chr15_43866707_+ENSG00000092470.10ENST00000381246hsa-miR-377-5p43866704438667107mer-m84386669043866711155-19.92
CAediting_1034466chr15_43866677_+ENSG00000092470.10ENST00000381246hsa-miR-508-5p43866672438666787mer-m84386665543866679152-24.34
CAediting_1034475chr15_43866802_+ENSG00000092470.10ENST00000381246hsa-miR-520d-5p43866796438668016mer4386678243866802142-12.5
CAediting_1034479chr15_43866862_+ENSG00000092470.10ENST00000381246hsa-miR-544b43866857438668637mer-m84386684443866864153-19.24
CAediting_1034473chr15_43866772_+ENSG00000092470.10ENST00000381246hsa-miR-550a-3-5p43866766438667727mer-m84386675443866773140-14.45
CAediting_1034473chr15_43866772_+ENSG00000092470.10ENST00000381246hsa-miR-550a-5p43866766438667727mer-m84386675143866773140-18.24
CAediting_1034473chr15_43866772_+ENSG00000092470.10ENST00000381246hsa-miR-550a-5p43866766438667727mer-m84386675143866773140-18.24
CAediting_1034472chr15_43866756_+ENSG00000092470.10ENST00000381246hsa-miR-569043866753438667597mer-m84386674043866760145-16.74
CAediting_1034468chr15_43866706_+ENSG00000092470.10ENST00000381246hsa-miR-608643866704438667107mer-m84386669243866711152-23.83
CAediting_1034469chr15_43866707_+ENSG00000092470.10ENST00000381246hsa-miR-608643866704438667107mer-m84386669243866711152-23.83
CAediting_1034466chr15_43866677_+ENSG00000092470.10ENST00000381246hsa-miR-6512-3p43866670438666767mer-m84386665643866677144-17.46
CAediting_1034466chr15_43866677_+ENSG00000092470.10ENST00000381246hsa-miR-6720-5p43866670438666767mer-m84386665543866677151-24.21
CAediting_1034467chr15_43866701_+ENSG00000092470.10ENST00000381246hsa-miR-6807-5p43866694438667007mer-m84386668043866701141-17.43
CAediting_1034479chr15_43866862_+ENSG00000092470.10ENST00000381246hsa-miR-7162-3p43866856438668627mer-m84386684343866863144-19.16
CAediting_1034473chr15_43866772_+ENSG00000092470.10ENST00000381246hsa-miR-76443866769438667757mer-m84386675643866776149-21.89
CAediting_1034466chr15_43866677_+ENSG00000092470.10ENST00000381246hsa-miR-766-3p43866671438666777mer-m84386665743866678145-20.71

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000092470.10ENST00000381246hsa-miR-195-3p43866502438665087mer-m84386648843866509150-14.75

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for WDR76

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for WDR76

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for WDR76

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for WDR76

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for WDR76

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for WDR76

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
WDR76C2239176Liver carcinoma1CTD_human