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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: NIPAL2 (CAeditome ID:79815)

Gene summary for NIPAL2

check button Gene summary
Gene informationGene symbol

NIPAL2

Gene ID

79815

Gene nameNIPA like domain containing 2
SynonymsNPAL2|SLC57A4
Cytomap

8q22.2

Type of geneprotein-coding
DescriptionNIPA-like protein 2
Modification date20210518
UniProtAcc

Q9H841

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for NIPAL2

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000104361.8

check button RNA A-to-I editing events in Cancer.
CAediting_652209(98190420, -), CAediting_652210(98190425, -), CAediting_652211(98190455, -), CAediting_652212(98190479, -), CAediting_652213(98190487, -), CAediting_652214(98190491, -), CAediting_652215(98190499, -), CAediting_652216(98190500, -), CAediting_652217(98190501, -), CAediting_652218(98190502, -), CAediting_652219(98190505, -), CAediting_652220(98190522, -), CAediting_652221(98190555, -), CAediting_652222(98190560, -), CAediting_652223(98190565, -), CAediting_652224(98190567, -), CAediting_652225(98190587, -), CAediting_652226(98190595, -), CAediting_652227(98190596, -), CAediting_652228(98190604, -), CAediting_652229(98193575, -), CAediting_652230(98193653, -), CAediting_652231(98193720, -), CAediting_652232(98218839, -), CAediting_652233(98218840, -), CAediting_652234(98218848, -), CAediting_652235(98218858, -), CAediting_652236(98218862, -), CAediting_652237(98218865, -), CAediting_652238(98218870, -), CAediting_652239(98218871, -), CAediting_652240(98218876, -), CAediting_652241(98218878, -), CAediting_652242(98218879, -), CAediting_652243(98218889, -), CAediting_652244(98218890, -), CAediting_652245(98218892, -), CAediting_652246(98218900, -), CAediting_652247(98218904, -), CAediting_652248(98218929, -), CAediting_652249(98218930, -), CAediting_652250(98218932, -), CAediting_652251(98218933, -), CAediting_652252(98218941, -), CAediting_652253(98218944, -), CAediting_652254(98218965, -), CAediting_652255(98218976, -), CAediting_652256(98218981, -), CAediting_652257(98219001, -), CAediting_652258(98219019, -), CAediting_652259(98219030, -), CAediting_652260(98219638, -), CAediting_652261(98219644, -), CAediting_652262(98219651, -), CAediting_652263(98219660, -), CAediting_652264(98219677, -), CAediting_652265(98219678, -), CAediting_652266(98219688, -), CAediting_652267(98219693, -), CAediting_652268(98219698, -), CAediting_652269(98219700, -), CAediting_652270(98219704, -), CAediting_652271(98219710, -), CAediting_652272(98219712, -), CAediting_652273(98219716, -), CAediting_652274(98219725, -), CAediting_652275(98219726, -), CAediting_652276(98219735, -), CAediting_652277(98219782, -), CAediting_652278(98219795, -), CAediting_652279(98219802, -), CAediting_652280(98219811, -), CAediting_652281(98219821, -), CAediting_652282(98219834, -), CAediting_652283(98219837, -), CAediting_652284(98224789, -), CAediting_652285(98224831, -), CAediting_652286(98224851, -), CAediting_652287(98224855, -), CAediting_652288(98224856, -), CAediting_652289(98224872, -), CAediting_652290(98224873, -), CAediting_652291(98224895, -), CAediting_652292(98224933, -), CAediting_652293(98224939, -), CAediting_652294(98224950, -), CAediting_652295(98224999, -), CAediting_652296(98233086, -), CAediting_652297(98233146, -), CAediting_652298(98233171, -), CAediting_652299(98233182, -), CAediting_652300(98234686, -), CAediting_652301(98234802, -), CAediting_652302(98236600, -), CAediting_652303(98236685, -), CAediting_652304(98236790, -), CAediting_652305(98236795, -), CAediting_652306(98267485, -), CAediting_652307(98267519, -), CAediting_652308(98273226, -), CAediting_652309(98273227, -), CAediting_652310(98273228, -), CAediting_652311(98273287, -), CAediting_652312(98273318, -), CAediting_652313(98275493, -), CAediting_652314(98276810, -), CAediting_652315(98276811, -), CAediting_652316(98276830, -), CAediting_652317(98276840, -), CAediting_652318(98276841, -), CAediting_652319(98276849, -), CAediting_652320(98276862, -), CAediting_652321(98276870, -), CAediting_652322(98276878, -), CAediting_652323(98276879, -), CAediting_652324(98276884, -), CAediting_652325(98276888, -), CAediting_652326(98276889, -), CAediting_652327(98276897, -), CAediting_652328(98276934, -), CAediting_652329(98276937, -), CAediting_652330(98276940, -), CAediting_652331(98276943, -), CAediting_652332(98276983, -), CAediting_652333(98277012, -), CAediting_652334(98277015, -), CAediting_652335(98277233, -), CAediting_652336(98277337, -), CAediting_652337(98277357, -), CAediting_652338(98277363, -), CAediting_652339(98277429, -), CAediting_652340(98277437, -), CAediting_652341(98277442, -), CAediting_652342(98277455, -), CAediting_652343(98277461, -), CAediting_652344(98277485, -), CAediting_652345(98277523, -), CAediting_652346(98277533, -), CAediting_652347(98277535, -), CAediting_652348(98277714, -), CAediting_652349(98277733, -), CAediting_652350(98277850, -), CAediting_652351(98277876, -), CAediting_652352(98277883, -), CAediting_652353(98289618, -), CAediting_652354(98294016, -),

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RNA editing positional annotations for NIPAL2 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_652354chr8_98294016_-nonsynonymous SNVENST00000341166.3c.A122Gp.Y41CDBD
CAediting_652354chr8_98294016_-nonsynonymous SNVENST00000430223.5c.A122Gp.Y41CDBD

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_652209chr8_98190420_-UTR3
CAediting_652210chr8_98190425_-UTR3
CAediting_652211chr8_98190455_-UTR3
CAediting_652212chr8_98190479_-UTR3
CAediting_652213chr8_98190487_-UTR3
CAediting_652214chr8_98190491_-UTR3
CAediting_652215chr8_98190499_-UTR3
CAediting_652216chr8_98190500_-UTR3
CAediting_652217chr8_98190501_-UTR3
CAediting_652218chr8_98190502_-UTR3
CAediting_652219chr8_98190505_-UTR3
CAediting_652220chr8_98190522_-UTR3
CAediting_652221chr8_98190555_-UTR3
CAediting_652222chr8_98190560_-UTR3
CAediting_652223chr8_98190565_-UTR3
CAediting_652224chr8_98190567_-UTR3
CAediting_652225chr8_98190587_-UTR3
CAediting_652226chr8_98190595_-UTR3
CAediting_652227chr8_98190596_-UTR3
CAediting_652228chr8_98190604_-UTR3
CAediting_652229chr8_98193575_-ncRNA_intronic
CAediting_652230chr8_98193653_-ncRNA_intronic
CAediting_652231chr8_98193720_-ncRNA_intronic
CAediting_652232chr8_98218839_-ncRNA_intronic
CAediting_652233chr8_98218840_-ncRNA_intronic
CAediting_652234chr8_98218848_-ncRNA_intronic
CAediting_652235chr8_98218858_-ncRNA_intronic
CAediting_652236chr8_98218862_-ncRNA_intronic
CAediting_652237chr8_98218865_-ncRNA_intronic
CAediting_652238chr8_98218870_-ncRNA_intronic
CAediting_652239chr8_98218871_-ncRNA_intronic
CAediting_652240chr8_98218876_-ncRNA_intronic
CAediting_652241chr8_98218878_-ncRNA_intronic
CAediting_652242chr8_98218879_-ncRNA_intronic
CAediting_652243chr8_98218889_-ncRNA_intronic
CAediting_652244chr8_98218890_-ncRNA_intronic
CAediting_652245chr8_98218892_-ncRNA_intronic
CAediting_652246chr8_98218900_-ncRNA_intronic
CAediting_652247chr8_98218904_-ncRNA_intronic
CAediting_652248chr8_98218929_-ncRNA_intronic
CAediting_652249chr8_98218930_-ncRNA_intronic
CAediting_652250chr8_98218932_-ncRNA_intronic
CAediting_652251chr8_98218933_-ncRNA_intronic
CAediting_652252chr8_98218941_-ncRNA_intronic
CAediting_652253chr8_98218944_-ncRNA_intronic
CAediting_652254chr8_98218965_-ncRNA_intronic
CAediting_652255chr8_98218976_-ncRNA_intronic
CAediting_652256chr8_98218981_-ncRNA_intronic
CAediting_652257chr8_98219001_-ncRNA_intronic
CAediting_652258chr8_98219019_-ncRNA_intronic
CAediting_652259chr8_98219030_-ncRNA_intronic
CAediting_652260chr8_98219638_-ncRNA_intronic
CAediting_652261chr8_98219644_-ncRNA_intronic
CAediting_652262chr8_98219651_-ncRNA_intronic
CAediting_652263chr8_98219660_-ncRNA_intronic
CAediting_652264chr8_98219677_-ncRNA_intronic
CAediting_652265chr8_98219678_-ncRNA_intronic
CAediting_652266chr8_98219688_-ncRNA_intronic
CAediting_652267chr8_98219693_-ncRNA_intronic
CAediting_652268chr8_98219698_-ncRNA_intronic
CAediting_652269chr8_98219700_-ncRNA_intronic
CAediting_652270chr8_98219704_-ncRNA_intronic
CAediting_652271chr8_98219710_-ncRNA_intronic
CAediting_652272chr8_98219712_-ncRNA_intronic
CAediting_652273chr8_98219716_-ncRNA_intronic
CAediting_652274chr8_98219725_-ncRNA_intronic
CAediting_652275chr8_98219726_-ncRNA_intronic
CAediting_652276chr8_98219735_-ncRNA_intronic
CAediting_652277chr8_98219782_-ncRNA_intronic
CAediting_652278chr8_98219795_-ncRNA_intronic
CAediting_652279chr8_98219802_-ncRNA_intronic
CAediting_652280chr8_98219811_-ncRNA_intronic
CAediting_652281chr8_98219821_-ncRNA_intronic
CAediting_652282chr8_98219834_-ncRNA_intronic
CAediting_652283chr8_98219837_-ncRNA_intronic
CAediting_652284chr8_98224789_-ncRNA_intronic
CAediting_652285chr8_98224831_-ncRNA_intronic
CAediting_652286chr8_98224851_-ncRNA_intronic
CAediting_652287chr8_98224855_-ncRNA_intronic
CAediting_652288chr8_98224856_-ncRNA_intronic
CAediting_652289chr8_98224872_-ncRNA_intronic
CAediting_652290chr8_98224873_-ncRNA_intronic
CAediting_652291chr8_98224895_-ncRNA_intronic
CAediting_652292chr8_98224933_-ncRNA_intronic
CAediting_652293chr8_98224939_-ncRNA_intronic
CAediting_652294chr8_98224950_-ncRNA_intronic
CAediting_652295chr8_98224999_-ncRNA_intronic
CAediting_652296chr8_98233086_-ncRNA_intronic
CAediting_652297chr8_98233146_-ncRNA_intronic
CAediting_652298chr8_98233171_-ncRNA_intronic
CAediting_652299chr8_98233182_-ncRNA_intronic
CAediting_652300chr8_98234686_-ncRNA_intronic
CAediting_652301chr8_98234802_-ncRNA_intronic
CAediting_652302chr8_98236600_-ncRNA_intronic
CAediting_652303chr8_98236685_-ncRNA_intronic
CAediting_652304chr8_98236790_-ncRNA_intronic
CAediting_652305chr8_98236795_-ncRNA_intronic
CAediting_652306chr8_98267485_-ncRNA_intronic
CAediting_652307chr8_98267519_-ncRNA_intronic
CAediting_652308chr8_98273226_-ncRNA_intronic
CAediting_652309chr8_98273227_-ncRNA_intronic
CAediting_652310chr8_98273228_-ncRNA_intronic
CAediting_652311chr8_98273287_-ncRNA_intronic
CAediting_652312chr8_98273318_-ncRNA_intronic
CAediting_652313chr8_98275493_-ncRNA_intronic
CAediting_652314chr8_98276810_-ncRNA_intronic
CAediting_652315chr8_98276811_-ncRNA_intronic
CAediting_652316chr8_98276830_-ncRNA_intronic
CAediting_652317chr8_98276840_-ncRNA_intronic
CAediting_652318chr8_98276841_-ncRNA_intronic
CAediting_652319chr8_98276849_-ncRNA_intronic
CAediting_652320chr8_98276862_-ncRNA_intronic
CAediting_652321chr8_98276870_-ncRNA_intronic
CAediting_652322chr8_98276878_-ncRNA_intronic
CAediting_652323chr8_98276879_-ncRNA_intronic
CAediting_652324chr8_98276884_-ncRNA_intronic
CAediting_652325chr8_98276888_-ncRNA_intronic
CAediting_652326chr8_98276889_-ncRNA_intronic
CAediting_652327chr8_98276897_-ncRNA_intronic
CAediting_652328chr8_98276934_-ncRNA_intronic
CAediting_652329chr8_98276937_-ncRNA_intronic
CAediting_652330chr8_98276940_-ncRNA_intronic
CAediting_652331chr8_98276943_-ncRNA_intronic
CAediting_652332chr8_98276983_-ncRNA_intronic
CAediting_652333chr8_98277012_-ncRNA_intronic
CAediting_652334chr8_98277015_-ncRNA_intronic
CAediting_652335chr8_98277233_-ncRNA_intronic
CAediting_652336chr8_98277337_-ncRNA_intronic
CAediting_652337chr8_98277357_-ncRNA_intronic
CAediting_652338chr8_98277363_-ncRNA_intronic
CAediting_652339chr8_98277429_-ncRNA_intronic
CAediting_652340chr8_98277437_-ncRNA_intronic
CAediting_652341chr8_98277442_-ncRNA_intronic
CAediting_652342chr8_98277455_-ncRNA_intronic
CAediting_652343chr8_98277461_-ncRNA_intronic
CAediting_652344chr8_98277485_-ncRNA_intronic
CAediting_652345chr8_98277523_-ncRNA_intronic
CAediting_652346chr8_98277533_-ncRNA_intronic
CAediting_652347chr8_98277535_-ncRNA_intronic
CAediting_652348chr8_98277714_-ncRNA_intronic
CAediting_652349chr8_98277733_-ncRNA_intronic
CAediting_652350chr8_98277850_-ncRNA_intronic
CAediting_652351chr8_98277876_-ncRNA_intronic
CAediting_652352chr8_98277883_-ncRNA_intronic
CAediting_652353chr8_98289618_-ncRNA_intronic
CAediting_652354chr8_98294016_-exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_652209chr8_98190420_-SINEAluAluSx1
CAediting_652210chr8_98190425_-SINEAluAluSx1
CAediting_652211chr8_98190455_-SINEAluAluSx1
CAediting_652212chr8_98190479_-SINEAluAluSx1
CAediting_652213chr8_98190487_-SINEAluAluSx1
CAediting_652214chr8_98190491_-SINEAluAluSx1
CAediting_652215chr8_98190499_-SINEAluAluSx1
CAediting_652216chr8_98190500_-SINEAluAluSx1
CAediting_652217chr8_98190501_-SINEAluAluSx1
CAediting_652218chr8_98190502_-SINEAluAluSx1
CAediting_652219chr8_98190505_-SINEAluAluSx1
CAediting_652220chr8_98190522_-SINEAluAluSx1
CAediting_652221chr8_98190555_-SINEAluAluSx1
CAediting_652222chr8_98190560_-SINEAluAluSx1
CAediting_652223chr8_98190565_-SINEAluAluSx1
CAediting_652224chr8_98190567_-SINEAluAluSx1
CAediting_652225chr8_98190587_-SINEAluAluSx1
CAediting_652226chr8_98190595_-SINEAluAluSx1
CAediting_652227chr8_98190596_-SINEAluAluSx1
CAediting_652228chr8_98190604_-SINEAluAluSx1
CAediting_652229chr8_98193575_-SINEAluAluSz
CAediting_652230chr8_98193653_-SINEAluAluSz
CAediting_652231chr8_98193720_-SINEAluAluSz
CAediting_652246chr8_98218900_-LINEL2L2c
CAediting_652247chr8_98218904_-LINEL2L2c
CAediting_652248chr8_98218929_-LINEL2L2c
CAediting_652249chr8_98218930_-LINEL2L2c
CAediting_652250chr8_98218932_-LINEL2L2c
CAediting_652251chr8_98218933_-LINEL2L2c
CAediting_652252chr8_98218941_-LINEL2L2c
CAediting_652253chr8_98218944_-LINEL2L2c
CAediting_652254chr8_98218965_-LINEL2L2c
CAediting_652255chr8_98218976_-LINEL2L2c
CAediting_652256chr8_98218981_-LINEL2L2c
CAediting_652257chr8_98219001_-LINEL2L2c
CAediting_652258chr8_98219019_-LINEL2L2c
CAediting_652259chr8_98219030_-LINEL2L2c
CAediting_652260chr8_98219638_-LINEL2L2
CAediting_652261chr8_98219644_-LINEL2L2
CAediting_652262chr8_98219651_-LINEL2L2
CAediting_652263chr8_98219660_-LINEL2L2
CAediting_652264chr8_98219677_-LINEL2L2
CAediting_652265chr8_98219678_-LINEL2L2
CAediting_652266chr8_98219688_-LINEL2L2
CAediting_652267chr8_98219693_-LINEL2L2
CAediting_652268chr8_98219698_-LINEL2L2
CAediting_652269chr8_98219700_-LINEL2L2
CAediting_652270chr8_98219704_-LINEL2L2
CAediting_652271chr8_98219710_-LINEL2L2
CAediting_652272chr8_98219712_-LINEL2L2
CAediting_652273chr8_98219716_-LINEL2L2
CAediting_652274chr8_98219725_-LINEL2L2
CAediting_652275chr8_98219726_-LINEL2L2
CAediting_652276chr8_98219735_-LINEL2L2
CAediting_652284chr8_98224789_-SINEAluAluSx
CAediting_652285chr8_98224831_-SINEAluAluSx
CAediting_652286chr8_98224851_-SINEAluAluSx
CAediting_652287chr8_98224855_-SINEAluAluSx
CAediting_652288chr8_98224856_-SINEAluAluSx
CAediting_652289chr8_98224872_-SINEAluAluSx
CAediting_652290chr8_98224873_-SINEAluAluSx
CAediting_652291chr8_98224895_-SINEAluAluSx
CAediting_652292chr8_98224933_-SINEAluAluSx
CAediting_652293chr8_98224939_-SINEAluAluSx
CAediting_652294chr8_98224950_-SINEAluAluSx
CAediting_652295chr8_98224999_-SINEAluAluSx
CAediting_652296chr8_98233086_-SINEAluAluSg
CAediting_652297chr8_98233146_-SINEAluAluSg
CAediting_652298chr8_98233171_-SINEAluAluSg
CAediting_652299chr8_98233182_-SINEAluAluSg
CAediting_652300chr8_98234686_-SINEAluAluJb
CAediting_652301chr8_98234802_-SINEAluAluJb
CAediting_652302chr8_98236600_-SINEAluAluJb
CAediting_652303chr8_98236685_-SINEAluAluJb
CAediting_652304chr8_98236790_-SINEAluAluJb
CAediting_652305chr8_98236795_-SINEAluAluJb
CAediting_652306chr8_98267485_-SINEAluAluJb
CAediting_652307chr8_98267519_-SINEAluAluJb
CAediting_652308chr8_98273226_-LINEL1L1MB7
CAediting_652309chr8_98273227_-LINEL1L1MB7
CAediting_652310chr8_98273228_-LINEL1L1MB7
CAediting_652311chr8_98273287_-LINEL1L1MB7
CAediting_652312chr8_98273318_-LINEL1L1MB7
CAediting_652313chr8_98275493_-LINEL1L1MD2
CAediting_652314chr8_98276810_-SINEAluAluSz
CAediting_652315chr8_98276811_-SINEAluAluSz
CAediting_652316chr8_98276830_-SINEAluAluSz
CAediting_652317chr8_98276840_-SINEAluAluSz
CAediting_652318chr8_98276841_-SINEAluAluSz
CAediting_652319chr8_98276849_-SINEAluAluSz
CAediting_652320chr8_98276862_-SINEAluAluSz
CAediting_652321chr8_98276870_-SINEAluAluSz
CAediting_652322chr8_98276878_-SINEAluAluSz
CAediting_652323chr8_98276879_-SINEAluAluSz
CAediting_652324chr8_98276884_-SINEAluAluSz
CAediting_652325chr8_98276888_-SINEAluAluSz
CAediting_652326chr8_98276889_-SINEAluAluSz
CAediting_652327chr8_98276897_-SINEAluAluSz
CAediting_652328chr8_98276934_-SINEAluAluSz
CAediting_652329chr8_98276937_-SINEAluAluSz
CAediting_652330chr8_98276940_-SINEAluAluSz
CAediting_652331chr8_98276943_-SINEAluAluSz
CAediting_652332chr8_98276983_-SINEAluAluSz
CAediting_652333chr8_98277012_-SINEAluAluSz
CAediting_652334chr8_98277015_-SINEAluAluSz
CAediting_652335chr8_98277233_-LINEL1L1MB7
CAediting_652336chr8_98277337_-SINEAluAluSz
CAediting_652337chr8_98277357_-SINEAluAluSz
CAediting_652338chr8_98277363_-SINEAluAluSz
CAediting_652339chr8_98277429_-SINEAluAluSz
CAediting_652340chr8_98277437_-SINEAluAluSz
CAediting_652341chr8_98277442_-SINEAluAluSz
CAediting_652342chr8_98277455_-SINEAluAluSz
CAediting_652343chr8_98277461_-SINEAluAluSz
CAediting_652344chr8_98277485_-SINEAluAluSz
CAediting_652345chr8_98277523_-SINEAluAluSz
CAediting_652346chr8_98277533_-SINEAluAluSz
CAediting_652347chr8_98277535_-SINEAluAluSz
CAediting_652348chr8_98277714_-LINEL1L1MB7
CAediting_652349chr8_98277733_-LINEL1L1MB7
CAediting_652350chr8_98277850_-LINEL1L1MB7
CAediting_652351chr8_98277876_-LINEL1L1MB7
CAediting_652352chr8_98277883_-LINEL1L1MB7
CAediting_652353chr8_98289618_-SINEAluFLAM_A

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RNA A-to-I editing events in the alternative splicing sites for NIPAL2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000104361.8.NIPAL2.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000104361.8.NIPAL2.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NIPAL2

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for NIPAL2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for NIPAL2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_652219chr8_98190505_-ENSG00000104361.8ENST00000341166hsa-miR-374b-3p98190500981905078mer-1a9819050098190522151.00-12.68
CAediting_652219chr8_98190505_-ENSG00000104361.8ENST00000341166hsa-miR-4756-3p98190505981905117mer-m89819050498190527152.00-19.12
CAediting_652213chr8_98190487_-ENSG00000104361.8ENST00000341166hsa-miR-3190-5p98190482981904887mer-m89819048198190500143.00-16.24
CAediting_652213chr8_98190487_-ENSG00000104361.8ENST00000341166hsa-miR-548s98190483981904897mer-m89819048298190505143.00-11.40
CAediting_652218chr8_98190502_-ENSG00000104361.8ENST00000341166hsa-miR-222-5p98190500981905078mer-1a9819050098190520141.00-9.81
CAediting_652218chr8_98190502_-ENSG00000104361.8ENST00000341166hsa-miR-30a-3p98190499981905057mer-m89819049898190522154.00-16.24
CAediting_652218chr8_98190502_-ENSG00000104361.8ENST00000341166hsa-miR-30d-3p98190499981905057mer-m89819049898190524154.00-18.81
CAediting_652218chr8_98190502_-ENSG00000104361.8ENST00000341166hsa-miR-30e-3p98190499981905057mer-m89819049898190522154.00-18.42
CAediting_652218chr8_98190502_-ENSG00000104361.8ENST00000341166hsa-miR-93698190501981905088mer-1a9819050198190523159.00-22.58
CAediting_652220chr8_98190522_-ENSG00000104361.8ENST00000341166hsa-miR-4716-5p98190521981905277mer-m89819052098190541140.00-14.64
CAediting_652223chr8_98190565_-ENSG00000104361.8ENST00000341166hsa-miR-4800-3p98190562981905687mer-m89819056198190579153.00-18.19
CAediting_652224chr8_98190567_-ENSG00000104361.8ENST00000341166hsa-miR-120298190565981905717mer-m89819056498190584154.00-19.47
CAediting_652224chr8_98190567_-ENSG00000104361.8ENST00000341166hsa-miR-3194-5p98190565981905728mer-1a9819056598190584143.00-18.63
CAediting_652224chr8_98190567_-ENSG00000104361.8ENST00000341166hsa-miR-397298190565981905717mer-m89819056498190588163.00-34.78
CAediting_652224chr8_98190567_-ENSG00000104361.8ENST00000341166hsa-miR-4727-5p98190563981905697mer-m89819056298190582161.00-24.30
CAediting_652224chr8_98190567_-ENSG00000104361.8ENST00000341166hsa-miR-4769-3p98190563981905697mer-1a9819056398190586145.00-31.87
CAediting_652224chr8_98190567_-ENSG00000104361.8ENST00000341166hsa-miR-6849-3p98190567981905737mer-m89819056698190587149.00-24.05
CAediting_652227chr8_98190596_-ENSG00000104361.8ENST00000341166hsa-miR-513a-5p98190595981906017mer-m89819059498190611152.00-17.32
CAediting_652227chr8_98190596_-ENSG00000104361.8ENST00000341166hsa-miR-513a-5p98190595981906017mer-m89819059498190611152.00-17.32
CAediting_652227chr8_98190596_-ENSG00000104361.8ENST00000341166hsa-miR-63898190590981905967mer-1a9819059098190614155.00-34.38
CAediting_652228chr8_98190604_-ENSG00000104361.8ENST00000341166hsa-miR-3622a-5p98190599981906057mer-m89819059898190619151.00-24.75
CAediting_652214chr8_98190491_-ENSG00000104361.8ENST00000341166hsa-miR-684498190490981904967mer-m89819048998190511154.00-7.81
CAediting_652217chr8_98190501_-ENSG00000104361.8ENST00000341166hsa-miR-32598190500981905078mer-1a9819050098190522145.00-9.91
CAediting_652217chr8_98190501_-ENSG00000104361.8ENST00000341166hsa-miR-3682-5p98190496981905027mer-m89819049598190516145.00-7.53
CAediting_652226chr8_98190595_-ENSG00000104361.8ENST00000341166hsa-miR-805298190590981905967mer-1a9819059098190608148.00-29.06

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_652226chr8_98190595_-ENSG00000104361.8ENST00000341166hsa-miR-10399-5p98190594981906007mer-m89819059398190614144-10.26
CAediting_652227chr8_98190596_-ENSG00000104361.8ENST00000341166hsa-miR-10399-5p98190594981906007mer-m89819059398190614144-10.26
CAediting_652221chr8_98190555_-ENSG00000104361.8ENST00000341166hsa-miR-3150a-5p98190550981905567mer-1a9819055098190571145-21.54
CAediting_652221chr8_98190555_-ENSG00000104361.8ENST00000341166hsa-miR-3150b-5p98190550981905567mer-1a9819055098190572142-21.66
CAediting_652221chr8_98190555_-ENSG00000104361.8ENST00000341166hsa-miR-433098190554981905607mer-m89819055398190576143-19.39
CAediting_652213chr8_98190487_-ENSG00000104361.8ENST00000341166hsa-miR-4735-5p98190486981904927mer-m89819048598190506148-7.2
CAediting_652214chr8_98190491_-ENSG00000104361.8ENST00000341166hsa-miR-4735-5p98190486981904927mer-m89819048598190506148-7.2
CAediting_652213chr8_98190487_-ENSG00000104361.8ENST00000341166hsa-miR-479498190482981904887mer-m89819048198190502140-14.58
CAediting_652226chr8_98190595_-ENSG00000104361.8ENST00000341166hsa-miR-5089-5p98190590981905967mer-m89819058998190608146-13.24
CAediting_652225chr8_98190587_-ENSG00000104361.8ENST00000341166hsa-miR-512-3p98190585981905917mer-m89819058498190605149-13.75
CAediting_652225chr8_98190587_-ENSG00000104361.8ENST00000341166hsa-miR-512-3p98190585981905917mer-m89819058498190605149-13.75
CAediting_652213chr8_98190487_-ENSG00000104361.8ENST00000341166hsa-miR-664a-5p98190482981904887mer-m89819048198190504141-13.02
CAediting_652228chr8_98190604_-ENSG00000104361.8ENST00000341166hsa-miR-6807-5p98190604981906107mer-m89819060398190625144-18.14
CAediting_652219chr8_98190505_-ENSG00000104361.8ENST00000341166hsa-miR-6832-5p98190504981905107mer-m89819050398190525142-15.43
CAediting_652227chr8_98190596_-ENSG00000104361.8ENST00000341166hsa-miR-7151-3p98190595981906028mer-1a9819059598190611146-17.62
CAediting_652225chr8_98190587_-ENSG00000104361.8ENST00000341166hsa-miR-75998190582981905887mer-m89819058198190602145-14.48
CAediting_652210chr8_98190425_-ENSG00000104361.8ENST00000341166hsa-miR-806298190423981904297mer-m89819042298190442141-10.43

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1229415chr17_67471547_+ENSG00000104361.8ENST00000341166hsa-miR-548aa98191815981918217mer-m89819181498191838140-9.35
CAediting_1399425chr20_1392958_-ENSG00000104361.8ENST00000341166hsa-miR-6869-5p98190706981907138mer-1a9819070698190727153-23.89
CAediting_396018chr5_1062918_-ENSG00000104361.8ENST00000341166hsa-miR-463598191961981919677mer-m89819196098191980151-12.88
CAediting_442554chr5_154685830_+ENSG00000104361.8ENST00000341166hsa-miR-130398190015981900217mer-m89819001498190034148-14.06
CAediting_604450chr7_133034877_-ENSG00000104361.8ENST00000341166hsa-miR-365498191317981913248mer-1a9819131798191335145-16.78
CAediting_524911chr7_5495852_-ENSG00000104361.8ENST00000341166hsa-miR-589-3p98190248981902547mer-m89819024798190270152-16.11

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_396018chr5_1062918_-ENSG00000104361.8ENST00000341166hsa-miR-463598191850981918578mer-1a9819185098191871151-17.71
CAediting_228905chr2_188297554_+ENSG00000104361.8ENST00000341166hsa-miR-561-3p98190629981906368mer-1a9819062998190646143-3.87

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for NIPAL2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000341166.3protein_codingSoverviewSoverview
ENST00000430223.5protein_codingSoverviewSoverview
ENST00000519324.1retained_intronSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_652209ENST00000341166.3chr8_98190420_--1326.60-1326.00-1353.30
CAediting_652210ENST00000341166.3chr8_98190425_--1326.20-1326.00-1353.30
CAediting_652211ENST00000341166.3chr8_98190455_--1325.30-1326.00-1353.30
CAediting_652212ENST00000341166.3chr8_98190479_--1325.30-1326.00-1353.30
CAediting_652213ENST00000341166.3chr8_98190487_--1328.20-1326.00-1353.30
CAediting_652214ENST00000341166.3chr8_98190491_--1326.70-1326.00-1353.30
CAediting_652215ENST00000341166.3chr8_98190499_--1326.00-1326.00-1353.30
CAediting_652216ENST00000341166.3chr8_98190500_--1327.90-1326.00-1353.30
CAediting_652217ENST00000341166.3chr8_98190501_--1326.30-1326.00-1353.30
CAediting_652218ENST00000341166.3chr8_98190502_--1326.00-1326.00-1353.30
CAediting_652219ENST00000341166.3chr8_98190505_--1326.40-1326.00-1353.30
CAediting_652220ENST00000341166.3chr8_98190522_--1330.20-1326.00-1353.30
CAediting_652221ENST00000341166.3chr8_98190555_--1328.70-1326.00-1353.30
CAediting_652222ENST00000341166.3chr8_98190560_--1326.30-1326.00-1353.30
CAediting_652223ENST00000341166.3chr8_98190565_--1327.30-1326.00-1353.30
CAediting_652224ENST00000341166.3chr8_98190567_--1327.80-1326.00-1353.30
CAediting_652225ENST00000341166.3chr8_98190587_--1326.00-1326.00-1353.30
CAediting_652226ENST00000341166.3chr8_98190595_--1328.00-1326.00-1353.30
CAediting_652227ENST00000341166.3chr8_98190596_--1328.60-1326.00-1353.30
CAediting_652228ENST00000341166.3chr8_98190604_--1328.80-1326.00-1353.30
CAediting_652354ENST00000341166.3chr8_98294016_--1325.00-1326.00-1353.30
CAediting_652209ENST00000430223.5chr8_98190420_--1290.90-1290.10-1318.30
CAediting_652210ENST00000430223.5chr8_98190425_--1289.70-1290.10-1318.30
CAediting_652211ENST00000430223.5chr8_98190455_--1290.30-1290.10-1318.30
CAediting_652212ENST00000430223.5chr8_98190479_--1290.00-1290.10-1318.30
CAediting_652213ENST00000430223.5chr8_98190487_--1294.50-1290.10-1318.30
CAediting_652214ENST00000430223.5chr8_98190491_--1290.80-1290.10-1318.30
CAediting_652215ENST00000430223.5chr8_98190499_--1291.40-1290.10-1318.30
CAediting_652216ENST00000430223.5chr8_98190500_--1292.60-1290.10-1318.30
CAediting_652217ENST00000430223.5chr8_98190501_--1290.50-1290.10-1318.30
CAediting_652218ENST00000430223.5chr8_98190502_--1290.10-1290.10-1318.30
CAediting_652219ENST00000430223.5chr8_98190505_--1290.10-1290.10-1318.30
CAediting_652220ENST00000430223.5chr8_98190522_--1292.60-1290.10-1318.30
CAediting_652221ENST00000430223.5chr8_98190555_--1292.80-1290.10-1318.30
CAediting_652222ENST00000430223.5chr8_98190560_--1290.40-1290.10-1318.30
CAediting_652223ENST00000430223.5chr8_98190565_--1291.40-1290.10-1318.30
CAediting_652224ENST00000430223.5chr8_98190567_--1291.90-1290.10-1318.30
CAediting_652225ENST00000430223.5chr8_98190587_--1290.10-1290.10-1318.30
CAediting_652226ENST00000430223.5chr8_98190595_--1292.10-1290.10-1318.30
CAediting_652227ENST00000430223.5chr8_98190596_--1292.70-1290.10-1318.30
CAediting_652228ENST00000430223.5chr8_98190604_--1292.90-1290.10-1318.30
CAediting_652354ENST00000430223.5chr8_98294016_--1290.10-1290.10-1318.30
CAediting_652354ENST00000519324.1chr8_98294016_--181.30-181.30-181.30

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Relation with ADAR for NIPAL2

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for NIPAL2

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for NIPAL2

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for NIPAL2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for NIPAL2

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
NIPAL2C0023893Liver Cirrhosis, Experimental1CTD_human