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Editing gene: CLIP4 (CAeditome ID:79745)

Gene summary for CLIP4

Gene summary

Gene information	Gene symbol	CLIP4
	Gene ID	79745
	Gene name	CAP-Gly domain containing linker protein family member 4
	Synonyms	RSNL2
	Cytomap	2p23.2
	Type of gene	protein-coding
	Description	CAP-Gly domain-containing linker protein 4CAP-GLY domain containing linker protein family, member 4restin-like protein 2
	Modification date	20210518
	UniProtAcc	Q8N3C7
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
CLIP4	GO:0043231	CAP-Gly domain-containing linker protein 4	0000052

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RNA A-to-I events for CLIP4

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000115295.18

RNA A-to-I editing events in Cancer.

CAediting_166407(29148778, +), CAediting_166408(29148779, +), CAediting_166409(29158778, +), CAediting_166410(29158788, +), CAediting_166411(29158789, +), CAediting_166412(29158790, +), CAediting_166413(29158794, +), CAediting_166414(29158795, +), CAediting_166415(29158874, +), CAediting_166416(29158896, +), CAediting_166417(29158897, +), CAediting_166418(29159575, +), CAediting_166419(29159600, +), CAediting_166420(29159609, +), CAediting_166421(29159614, +), CAediting_166422(29159621, +), CAediting_166423(29159627, +), CAediting_166424(29159631, +), CAediting_166425(29159632, +), CAediting_166426(29176868, +), CAediting_166427(29177131, +), CAediting_166428(29177135, +), CAediting_166429(29177153, +), CAediting_166430(29177154, +), CAediting_166431(29177160, +), CAediting_166432(29177176, +), CAediting_166433(29177208, +), CAediting_166434(29177222, +), CAediting_166435(29177223, +), CAediting_166436(29177255, +), CAediting_166437(29177282, +), CAediting_166438(29177288, +), CAediting_166439(29177294, +), CAediting_166440(29177302, +), CAediting_166441(29177315, +), CAediting_166442(29177324, +), CAediting_166443(29177358, +), CAediting_166444(29177359, +), CAediting_166445(29177454, +), CAediting_166446(29177460, +), CAediting_166447(29177461, +), CAediting_166448(29177466, +), CAediting_166449(29177483, +), CAediting_166450(29177496, +), CAediting_166451(29177501, +), CAediting_166452(29177502, +), CAediting_166453(29177513, +), CAediting_166454(29177531, +), CAediting_166455(29177566, +), CAediting_166456(29178225, +), CAediting_166457(29178280, +), CAediting_166458(29178284, +), CAediting_166459(29178313, +), CAediting_166460(29178319, +), CAediting_166461(29178321, +), CAediting_166462(29178329, +), CAediting_166463(29178341, +), CAediting_166464(29178345, +), CAediting_166465(29178361, +), CAediting_166466(29178403, +), CAediting_166467(29178410, +), CAediting_166468(29178420, +), CAediting_166469(29178455, +), CAediting_166470(29178847, +), CAediting_166471(29178859, +), CAediting_166472(29178864, +), CAediting_166473(29178869, +), CAediting_166474(29178874, +), CAediting_166475(29178894, +), CAediting_166476(29178895, +), CAediting_166477(29178912, +), CAediting_166478(29178924, +), CAediting_166479(29178934, +), CAediting_166480(29178940, +), CAediting_166481(29178978, +), CAediting_166482(29179015, +), CAediting_166483(29179030, +), CAediting_166484(29179047, +), CAediting_166485(29179069, +),

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RNA editing positional annotations for CLIP4 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_166407	chr2_29148778_+	intronic
CAediting_166408	chr2_29148779_+	intronic
CAediting_166409	chr2_29158778_+	intronic
CAediting_166410	chr2_29158788_+	intronic
CAediting_166411	chr2_29158789_+	intronic
CAediting_166412	chr2_29158790_+	intronic
CAediting_166413	chr2_29158794_+	intronic
CAediting_166414	chr2_29158795_+	intronic
CAediting_166415	chr2_29158874_+	intronic
CAediting_166416	chr2_29158896_+	intronic
CAediting_166417	chr2_29158897_+	intronic
CAediting_166418	chr2_29159575_+	intronic
CAediting_166419	chr2_29159600_+	intronic
CAediting_166420	chr2_29159609_+	intronic
CAediting_166421	chr2_29159614_+	intronic
CAediting_166422	chr2_29159621_+	intronic
CAediting_166423	chr2_29159627_+	intronic
CAediting_166424	chr2_29159631_+	intronic
CAediting_166425	chr2_29159632_+	intronic
CAediting_166426	chr2_29176868_+	ncRNA_intronic
CAediting_166427	chr2_29177131_+	ncRNA_intronic
CAediting_166428	chr2_29177135_+	ncRNA_intronic
CAediting_166429	chr2_29177153_+	ncRNA_intronic
CAediting_166430	chr2_29177154_+	ncRNA_intronic
CAediting_166431	chr2_29177160_+	ncRNA_intronic
CAediting_166432	chr2_29177176_+	ncRNA_intronic
CAediting_166433	chr2_29177208_+	ncRNA_intronic
CAediting_166434	chr2_29177222_+	ncRNA_intronic
CAediting_166435	chr2_29177223_+	ncRNA_intronic
CAediting_166436	chr2_29177255_+	ncRNA_intronic
CAediting_166437	chr2_29177282_+	ncRNA_intronic
CAediting_166438	chr2_29177288_+	ncRNA_intronic
CAediting_166439	chr2_29177294_+	ncRNA_intronic
CAediting_166440	chr2_29177302_+	ncRNA_intronic
CAediting_166441	chr2_29177315_+	ncRNA_intronic
CAediting_166442	chr2_29177324_+	ncRNA_intronic
CAediting_166443	chr2_29177358_+	ncRNA_intronic
CAediting_166444	chr2_29177359_+	ncRNA_intronic
CAediting_166445	chr2_29177454_+	ncRNA_intronic
CAediting_166446	chr2_29177460_+	ncRNA_intronic
CAediting_166447	chr2_29177461_+	ncRNA_intronic
CAediting_166448	chr2_29177466_+	ncRNA_intronic
CAediting_166449	chr2_29177483_+	ncRNA_intronic
CAediting_166450	chr2_29177496_+	ncRNA_intronic
CAediting_166451	chr2_29177501_+	ncRNA_intronic
CAediting_166452	chr2_29177502_+	ncRNA_intronic
CAediting_166453	chr2_29177513_+	ncRNA_intronic
CAediting_166454	chr2_29177531_+	ncRNA_intronic
CAediting_166455	chr2_29177566_+	ncRNA_intronic
CAediting_166456	chr2_29178225_+	ncRNA_intronic
CAediting_166457	chr2_29178280_+	ncRNA_intronic
CAediting_166458	chr2_29178284_+	ncRNA_intronic
CAediting_166459	chr2_29178313_+	ncRNA_intronic
CAediting_166460	chr2_29178319_+	ncRNA_intronic
CAediting_166461	chr2_29178321_+	ncRNA_intronic
CAediting_166462	chr2_29178329_+	ncRNA_intronic
CAediting_166463	chr2_29178341_+	ncRNA_intronic
CAediting_166464	chr2_29178345_+	ncRNA_intronic
CAediting_166465	chr2_29178361_+	ncRNA_intronic
CAediting_166466	chr2_29178403_+	ncRNA_intronic
CAediting_166467	chr2_29178410_+	ncRNA_intronic
CAediting_166468	chr2_29178420_+	ncRNA_intronic
CAediting_166469	chr2_29178455_+	ncRNA_intronic
CAediting_166470	chr2_29178847_+	ncRNA_intronic
CAediting_166471	chr2_29178859_+	ncRNA_intronic
CAediting_166472	chr2_29178864_+	ncRNA_intronic
CAediting_166473	chr2_29178869_+	ncRNA_intronic
CAediting_166474	chr2_29178874_+	ncRNA_intronic
CAediting_166475	chr2_29178894_+	ncRNA_intronic
CAediting_166476	chr2_29178895_+	ncRNA_intronic
CAediting_166477	chr2_29178912_+	ncRNA_intronic
CAediting_166478	chr2_29178924_+	ncRNA_intronic
CAediting_166479	chr2_29178934_+	ncRNA_intronic
CAediting_166480	chr2_29178940_+	ncRNA_intronic
CAediting_166481	chr2_29178978_+	ncRNA_intronic
CAediting_166482	chr2_29179015_+	ncRNA_intronic
CAediting_166483	chr2_29179030_+	ncRNA_intronic
CAediting_166484	chr2_29179047_+	ncRNA_intronic
CAediting_166485	chr2_29179069_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_166409	chr2_29158778_+	SINE	Alu	AluJo
CAediting_166410	chr2_29158788_+	SINE	Alu	AluJo
CAediting_166411	chr2_29158789_+	SINE	Alu	AluJo
CAediting_166412	chr2_29158790_+	SINE	Alu	AluJo
CAediting_166413	chr2_29158794_+	SINE	Alu	AluJo
CAediting_166414	chr2_29158795_+	SINE	Alu	AluJo
CAediting_166415	chr2_29158874_+	SINE	Alu	AluJo
CAediting_166416	chr2_29158896_+	SINE	Alu	AluJo
CAediting_166417	chr2_29158897_+	SINE	Alu	AluJo
CAediting_166418	chr2_29159575_+	SINE	Alu	FLAM_C
CAediting_166419	chr2_29159600_+	SINE	Alu	FLAM_C
CAediting_166420	chr2_29159609_+	SINE	Alu	FLAM_C
CAediting_166421	chr2_29159614_+	SINE	Alu	FLAM_C
CAediting_166422	chr2_29159621_+	SINE	Alu	FLAM_C
CAediting_166423	chr2_29159627_+	SINE	Alu	FLAM_C
CAediting_166424	chr2_29159631_+	SINE	Alu	FLAM_C
CAediting_166425	chr2_29159632_+	SINE	Alu	FLAM_C
CAediting_166427	chr2_29177131_+	SINE	Alu	AluSc
CAediting_166428	chr2_29177135_+	SINE	Alu	AluSc
CAediting_166429	chr2_29177153_+	SINE	Alu	AluSc
CAediting_166430	chr2_29177154_+	SINE	Alu	AluSc
CAediting_166431	chr2_29177160_+	SINE	Alu	AluSc
CAediting_166432	chr2_29177176_+	SINE	Alu	AluSc
CAediting_166433	chr2_29177208_+	SINE	Alu	AluSc
CAediting_166434	chr2_29177222_+	SINE	Alu	AluSc
CAediting_166435	chr2_29177223_+	SINE	Alu	AluSc
CAediting_166436	chr2_29177255_+	SINE	Alu	AluSc
CAediting_166437	chr2_29177282_+	SINE	Alu	AluSc
CAediting_166438	chr2_29177288_+	SINE	Alu	AluSc
CAediting_166439	chr2_29177294_+	SINE	Alu	AluSc
CAediting_166440	chr2_29177302_+	SINE	Alu	AluSc
CAediting_166441	chr2_29177315_+	SINE	Alu	AluSc
CAediting_166442	chr2_29177324_+	SINE	Alu	AluSc
CAediting_166443	chr2_29177358_+	SINE	Alu	AluSc
CAediting_166444	chr2_29177359_+	SINE	Alu	AluSc
CAediting_166445	chr2_29177454_+	SINE	Alu	AluSx1
CAediting_166446	chr2_29177460_+	SINE	Alu	AluSx1
CAediting_166447	chr2_29177461_+	SINE	Alu	AluSx1
CAediting_166448	chr2_29177466_+	SINE	Alu	AluSx1
CAediting_166449	chr2_29177483_+	SINE	Alu	AluSx1
CAediting_166450	chr2_29177496_+	SINE	Alu	AluSx1
CAediting_166451	chr2_29177501_+	SINE	Alu	AluSx1
CAediting_166452	chr2_29177502_+	SINE	Alu	AluSx1
CAediting_166453	chr2_29177513_+	SINE	Alu	AluSx1
CAediting_166454	chr2_29177531_+	SINE	Alu	AluSx1
CAediting_166455	chr2_29177566_+	SINE	Alu	AluSx1
CAediting_166456	chr2_29178225_+	SINE	Alu	AluSq2
CAediting_166457	chr2_29178280_+	SINE	Alu	AluSq2
CAediting_166458	chr2_29178284_+	SINE	Alu	AluSq2
CAediting_166459	chr2_29178313_+	SINE	Alu	AluSq2
CAediting_166460	chr2_29178319_+	SINE	Alu	AluSq2
CAediting_166461	chr2_29178321_+	SINE	Alu	AluSq2
CAediting_166462	chr2_29178329_+	SINE	Alu	AluSq2
CAediting_166463	chr2_29178341_+	SINE	Alu	AluSq2
CAediting_166464	chr2_29178345_+	SINE	Alu	AluSq2
CAediting_166465	chr2_29178361_+	SINE	Alu	AluSq2
CAediting_166466	chr2_29178403_+	SINE	Alu	AluSq2
CAediting_166467	chr2_29178410_+	SINE	Alu	AluSq2
CAediting_166468	chr2_29178420_+	SINE	Alu	AluSq2
CAediting_166469	chr2_29178455_+	SINE	Alu	AluSq2
CAediting_166470	chr2_29178847_+	SINE	Alu	AluSx1
CAediting_166471	chr2_29178859_+	SINE	Alu	AluSx1
CAediting_166472	chr2_29178864_+	SINE	Alu	AluSx1
CAediting_166473	chr2_29178869_+	SINE	Alu	AluSx1
CAediting_166474	chr2_29178874_+	SINE	Alu	AluSx1
CAediting_166475	chr2_29178894_+	SINE	Alu	AluSx1
CAediting_166476	chr2_29178895_+	SINE	Alu	AluSx1
CAediting_166477	chr2_29178912_+	SINE	Alu	AluSx1
CAediting_166478	chr2_29178924_+	SINE	Alu	AluSx1
CAediting_166479	chr2_29178934_+	SINE	Alu	AluSx1
CAediting_166480	chr2_29178940_+	SINE	Alu	AluSx1
CAediting_166481	chr2_29178978_+	SINE	Alu	AluSx1
CAediting_166482	chr2_29179015_+	SINE	Alu	AluSx1
CAediting_166483	chr2_29179030_+	SINE	Alu	AluSx1
CAediting_166484	chr2_29179047_+	SINE	Alu	AluSx1
CAediting_166485	chr2_29179069_+	SINE	Alu	AluSx1

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RNA A-to-I editing events in the alternative splicing sites for CLIP4

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_166409	chr2_29158778_+	29158775:29158797	3SS	0+17i	TTTATTTTTTATTAAAGACAAGG	-19.19	TTTGTTTTTTATTAAAGACAAGG	-19
ES	CAediting_166410	chr2_29158788_+	29158775:29158797	3SS	0+7i	TTTATTTTTTATTAAAGACAAGG	-19.19	TTTATTTTTTATTGAAGACAAGG	-19.31
ES	CAediting_166411	chr2_29158789_+	29158775:29158797	3SS	0+6i	TTTATTTTTTATTAAAGACAAGG	-19.19	TTTATTTTTTATTAGAGACAAGG	-23.5
ES	CAediting_166412	chr2_29158790_+	29158775:29158797	3SS	0+5i	TTTATTTTTTATTAAAGACAAGG	-19.19	TTTATTTTTTATTAAGGACAAGG	-22.58
ES	CAediting_166413	chr2_29158794_+	29158775:29158797	3SS	0+1i	TTTATTTTTTATTAAAGACAAGG	-19.19	TTTATTTTTTATTAAAGACGAGG	-10.44
ES	CAediting_166414	chr2_29158795_+	29158775:29158797	3SS	1+0i	TTTATTTTTTATTAAAGACAAGG	-19.19	TTTATTTTTTATTAAAGACAGGG	-16.98
ES	CAediting_166415	chr2_29158874_+	29158868:29158876	5SS	0+4i	CAGGTGATC	4.28	CAGGTGGTC	1.07

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000115295.18.CLIP4.

Correlation between RNA A-to-I editing and PSI for ENSG00000115295.18.CLIP4.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CLIP4

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CLIP4

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for CLIP4

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_442554	chr5_154685830_+	ENSG00000115295.18	ENST00000415891	hsa-miR-1303	29163910	29163916	7mer-m8	29163896	29163917	142	-15.75
CAediting_1229415	chr17_67471547_+	ENSG00000115295.18	ENST00000456385	hsa-miR-548aa	29157354	29157360	7mer-m8	29157339	29157361	156	-18.23
CAediting_442554	chr5_154685830_+	ENSG00000115295.18	ENST00000456385	hsa-miR-1303	29163910	29163916	7mer-m8	29163896	29163917	142	-15.75

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CLIP4

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for CLIP4

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for CLIP4

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for CLIP4

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for CLIP4

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for CLIP4

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene