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Editing gene: TEFM (CAeditome ID:79736)

Gene summary for TEFM

Gene summary

Gene information	Gene symbol	TEFM
	Gene ID	79736
	Gene name	transcription elongation factor, mitochondrial
	Synonyms	C17orf42
	Cytomap	17q11.2
	Type of gene	protein-coding
	Description	transcription elongation factor, mitochondrialtranscription elongation factor of mitochondria
	Modification date	20210518
	UniProtAcc	Q96QE5
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
TEFM	GO:0008821	Transcription elongation factor, mitochondrial	21278163
TEFM	GO:0030337	Transcription elongation factor, mitochondrial	21278163
TEFM	GO:0005739	Transcription elongation factor, mitochondrial	0000052
TEFM	GO:0005759	Transcription elongation factor, mitochondrial	21278163
TEFM	GO:0042645	Transcription elongation factor, mitochondrial	21278163
TEFM	GO:1990904	Transcription elongation factor, mitochondrial	21278163

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RNA A-to-I events for TEFM

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000172171.9

RNA A-to-I editing events in Cancer.

CAediting_1178996(30897382, -), CAediting_1178997(30897391, -), CAediting_1178998(30897401, -), CAediting_1178999(30897420, -), CAediting_1179000(30897613, -), CAediting_1179001(30897615, -), CAediting_1179002(30897627, -), CAediting_1179003(30897628, -), CAediting_1179004(30897629, -), CAediting_1179005(30897673, -), CAediting_1179006(30897678, -), CAediting_1179007(30897685, -), CAediting_1179008(30897707, -), CAediting_1179009(30897721, -), CAediting_1179010(30897722, -), CAediting_1179011(30897752, -), CAediting_1179012(30897766, -), CAediting_1179013(30897787, -), CAediting_1179014(30897788, -), CAediting_1179015(30897791, -), CAediting_1179016(30897792, -), CAediting_1179017(30897811, -), CAediting_1179018(30897836, -), CAediting_1179019(30897838, -), CAediting_1179020(30897976, -), CAediting_1179021(30897980, -), CAediting_1179022(30897998, -), CAediting_1179023(30898010, -), CAediting_1179024(30898011, -), CAediting_1179025(30898012, -), CAediting_1179026(30898020, -), CAediting_1179027(30898034, -), CAediting_1179028(30898037, -), CAediting_1179029(30898051, -), CAediting_1179030(30898063, -), CAediting_1179031(30898075, -), CAediting_1179032(30898083, -), CAediting_1179033(30898089, -), CAediting_1179034(30898102, -), CAediting_1179035(30898111, -), CAediting_1179036(30898116, -), CAediting_1179037(30898121, -), CAediting_1179038(30898127, -), CAediting_1179039(30898129, -), CAediting_1179040(30898135, -), CAediting_1179041(30898139, -), CAediting_1179042(30898141, -), CAediting_1179043(30898142, -), CAediting_1179044(30898165, -), CAediting_1179045(30898168, -), CAediting_1179046(30898169, -), CAediting_1179047(30898190, -), CAediting_1179048(30898195, -), CAediting_1179049(30898201, -), CAediting_1179050(30898208, -), CAediting_1179051(30898216, -), CAediting_1179052(30898225, -), CAediting_1179053(30898233, -), CAediting_1179054(30898241, -), CAediting_1179055(30898364, -), CAediting_1179056(30898383, -), CAediting_1179057(30898384, -), CAediting_1179058(30898408, -), CAediting_1179059(30898423, -), CAediting_1179060(30898428, -), CAediting_1179061(30898432, -), CAediting_1179062(30898459, -), CAediting_1179063(30898474, -), CAediting_1179064(30898484, -), CAediting_1179065(30898510, -), CAediting_1179066(30898532, -), CAediting_1179067(30898552, -), CAediting_1179068(30898557, -), CAediting_1179069(30898582, -), CAediting_1179070(30898623, -), CAediting_1179071(30898624, -), CAediting_1179072(30898632, -), CAediting_1179073(30898845, -), CAediting_1179074(30898864, -), CAediting_1179075(30898865, -), CAediting_1179076(30898892, -), CAediting_1179077(30898896, -), CAediting_1179078(30898902, -), CAediting_1179079(30898910, -), CAediting_1179080(30898913, -), CAediting_1179081(30898918, -), CAediting_1179082(30898919, -), CAediting_1179083(30898935, -), CAediting_1179084(30900025, -), CAediting_1179085(30900080, -), CAediting_1179086(30900699, -), CAediting_1179087(30900740, -), CAediting_1179088(30900801, -), CAediting_1179089(30900802, -), CAediting_1179090(30900807, -), CAediting_1179091(30900835, -), CAediting_1179092(30900843, -), CAediting_1179093(30900857, -), CAediting_1179094(30900901, -), CAediting_1179095(30901040, -), CAediting_1179096(30901141, -), CAediting_1179097(30901145, -), CAediting_1179098(30901149, -), CAediting_1179099(30901153, -), CAediting_1179100(30901158, -), CAediting_1179101(30901159, -), CAediting_1179102(30901165, -), CAediting_1179103(30901188, -), CAediting_1179104(30901189, -), CAediting_1179105(30901191, -), CAediting_1179106(30901194, -), CAediting_1179107(30901199, -), CAediting_1179108(30901200, -), CAediting_1179109(30901240, -), CAediting_1179110(30901293, -), CAediting_1179111(30902917, -), CAediting_1179112(30902946, -), CAediting_1179113(30902949, -), CAediting_1179114(30902963, -), CAediting_1179115(30902980, -), CAediting_1179116(30902995, -), CAediting_1179117(30903061, -), CAediting_1179118(30903074, -), CAediting_1179119(30903084, -), CAediting_1179120(30903332, -), CAediting_1179121(30903335, -), CAediting_1179122(30903355, -), CAediting_1179123(30903359, -), CAediting_1179124(30903365, -), CAediting_1179125(30903383, -), CAediting_1179126(30903391, -), CAediting_1179127(30903395, -), CAediting_1179128(30903396, -), CAediting_1179129(30903397, -), CAediting_1179130(30903400, -), CAediting_1179131(30903402, -), CAediting_1179132(30903403, -), CAediting_1179133(30903404, -), CAediting_1179134(30903406, -), CAediting_1179135(30903409, -), CAediting_1179136(30903420, -), CAediting_1179137(30903431, -), CAediting_1179138(30903451, -), CAediting_1179139(30903453, -), CAediting_1179140(30903454, -), CAediting_1179141(30903459, -), CAediting_1179142(30903460, -), CAediting_1179143(30903462, -), CAediting_1179144(30903474, -), CAediting_1179145(30903475, -), CAediting_1179146(30903476, -), CAediting_1179147(30903498, -),

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RNA editing positional annotations for TEFM using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1178996	chr17_30897382_-	ncRNA_exonic
CAediting_1178997	chr17_30897391_-	ncRNA_exonic
CAediting_1178998	chr17_30897401_-	ncRNA_exonic
CAediting_1178999	chr17_30897420_-	ncRNA_exonic
CAediting_1179000	chr17_30897613_-	ncRNA_exonic
CAediting_1179001	chr17_30897615_-	ncRNA_exonic
CAediting_1179002	chr17_30897627_-	ncRNA_exonic
CAediting_1179003	chr17_30897628_-	ncRNA_exonic
CAediting_1179004	chr17_30897629_-	ncRNA_exonic
CAediting_1179005	chr17_30897673_-	ncRNA_exonic
CAediting_1179006	chr17_30897678_-	ncRNA_exonic
CAediting_1179007	chr17_30897685_-	ncRNA_exonic
CAediting_1179008	chr17_30897707_-	ncRNA_exonic
CAediting_1179009	chr17_30897721_-	ncRNA_exonic
CAediting_1179010	chr17_30897722_-	ncRNA_exonic
CAediting_1179011	chr17_30897752_-	ncRNA_exonic
CAediting_1179012	chr17_30897766_-	ncRNA_intronic
CAediting_1179013	chr17_30897787_-	ncRNA_intronic
CAediting_1179014	chr17_30897788_-	ncRNA_intronic
CAediting_1179015	chr17_30897791_-	ncRNA_intronic
CAediting_1179016	chr17_30897792_-	ncRNA_intronic
CAediting_1179017	chr17_30897811_-	ncRNA_intronic
CAediting_1179018	chr17_30897836_-	ncRNA_intronic
CAediting_1179019	chr17_30897838_-	ncRNA_intronic
CAediting_1179020	chr17_30897976_-	ncRNA_intronic
CAediting_1179021	chr17_30897980_-	ncRNA_intronic
CAediting_1179022	chr17_30897998_-	ncRNA_intronic
CAediting_1179023	chr17_30898010_-	ncRNA_intronic
CAediting_1179024	chr17_30898011_-	ncRNA_intronic
CAediting_1179025	chr17_30898012_-	ncRNA_intronic
CAediting_1179026	chr17_30898020_-	ncRNA_intronic
CAediting_1179027	chr17_30898034_-	ncRNA_intronic
CAediting_1179028	chr17_30898037_-	ncRNA_intronic
CAediting_1179029	chr17_30898051_-	ncRNA_intronic
CAediting_1179030	chr17_30898063_-	ncRNA_intronic
CAediting_1179031	chr17_30898075_-	ncRNA_intronic
CAediting_1179032	chr17_30898083_-	ncRNA_intronic
CAediting_1179033	chr17_30898089_-	ncRNA_intronic
CAediting_1179034	chr17_30898102_-	ncRNA_intronic
CAediting_1179035	chr17_30898111_-	ncRNA_intronic
CAediting_1179036	chr17_30898116_-	ncRNA_intronic
CAediting_1179037	chr17_30898121_-	ncRNA_intronic
CAediting_1179038	chr17_30898127_-	ncRNA_intronic
CAediting_1179039	chr17_30898129_-	ncRNA_intronic
CAediting_1179040	chr17_30898135_-	ncRNA_intronic
CAediting_1179041	chr17_30898139_-	ncRNA_intronic
CAediting_1179042	chr17_30898141_-	ncRNA_intronic
CAediting_1179043	chr17_30898142_-	ncRNA_intronic
CAediting_1179044	chr17_30898165_-	ncRNA_intronic
CAediting_1179045	chr17_30898168_-	ncRNA_intronic
CAediting_1179046	chr17_30898169_-	ncRNA_intronic
CAediting_1179047	chr17_30898190_-	ncRNA_intronic
CAediting_1179048	chr17_30898195_-	ncRNA_intronic
CAediting_1179049	chr17_30898201_-	ncRNA_intronic
CAediting_1179050	chr17_30898208_-	ncRNA_intronic
CAediting_1179051	chr17_30898216_-	ncRNA_intronic
CAediting_1179052	chr17_30898225_-	ncRNA_intronic
CAediting_1179053	chr17_30898233_-	ncRNA_intronic
CAediting_1179054	chr17_30898241_-	ncRNA_intronic
CAediting_1179055	chr17_30898364_-	ncRNA_intronic
CAediting_1179056	chr17_30898383_-	ncRNA_intronic
CAediting_1179057	chr17_30898384_-	ncRNA_intronic
CAediting_1179058	chr17_30898408_-	ncRNA_intronic
CAediting_1179059	chr17_30898423_-	ncRNA_intronic
CAediting_1179060	chr17_30898428_-	ncRNA_intronic
CAediting_1179061	chr17_30898432_-	ncRNA_intronic
CAediting_1179062	chr17_30898459_-	ncRNA_intronic
CAediting_1179063	chr17_30898474_-	ncRNA_intronic
CAediting_1179064	chr17_30898484_-	ncRNA_intronic
CAediting_1179065	chr17_30898510_-	ncRNA_intronic
CAediting_1179066	chr17_30898532_-	ncRNA_intronic
CAediting_1179067	chr17_30898552_-	ncRNA_intronic
CAediting_1179068	chr17_30898557_-	ncRNA_intronic
CAediting_1179069	chr17_30898582_-	ncRNA_intronic
CAediting_1179070	chr17_30898623_-	ncRNA_intronic
CAediting_1179071	chr17_30898624_-	ncRNA_intronic
CAediting_1179072	chr17_30898632_-	ncRNA_intronic
CAediting_1179073	chr17_30898845_-	ncRNA_intronic
CAediting_1179074	chr17_30898864_-	ncRNA_intronic
CAediting_1179075	chr17_30898865_-	ncRNA_intronic
CAediting_1179076	chr17_30898892_-	ncRNA_intronic
CAediting_1179077	chr17_30898896_-	ncRNA_intronic
CAediting_1179078	chr17_30898902_-	ncRNA_intronic
CAediting_1179079	chr17_30898910_-	ncRNA_exonic
CAediting_1179080	chr17_30898913_-	ncRNA_exonic
CAediting_1179081	chr17_30898918_-	ncRNA_exonic
CAediting_1179082	chr17_30898919_-	ncRNA_exonic
CAediting_1179083	chr17_30898935_-	ncRNA_exonic
CAediting_1179084	chr17_30900025_-	UTR3
CAediting_1179085	chr17_30900080_-	UTR3
CAediting_1179086	chr17_30900699_-	intronic
CAediting_1179087	chr17_30900740_-	intronic
CAediting_1179088	chr17_30900801_-	intronic
CAediting_1179089	chr17_30900802_-	intronic
CAediting_1179090	chr17_30900807_-	intronic
CAediting_1179091	chr17_30900835_-	intronic
CAediting_1179092	chr17_30900843_-	intronic
CAediting_1179093	chr17_30900857_-	intronic
CAediting_1179094	chr17_30900901_-	intronic
CAediting_1179095	chr17_30901040_-	intronic
CAediting_1179096	chr17_30901141_-	intronic
CAediting_1179097	chr17_30901145_-	intronic
CAediting_1179098	chr17_30901149_-	intronic
CAediting_1179099	chr17_30901153_-	intronic
CAediting_1179100	chr17_30901158_-	intronic
CAediting_1179101	chr17_30901159_-	intronic
CAediting_1179102	chr17_30901165_-	intronic
CAediting_1179103	chr17_30901188_-	intronic
CAediting_1179104	chr17_30901189_-	intronic
CAediting_1179105	chr17_30901191_-	intronic
CAediting_1179106	chr17_30901194_-	intronic
CAediting_1179107	chr17_30901199_-	intronic
CAediting_1179108	chr17_30901200_-	intronic
CAediting_1179109	chr17_30901240_-	intronic
CAediting_1179110	chr17_30901293_-	intronic
CAediting_1179111	chr17_30902917_-	intronic
CAediting_1179112	chr17_30902946_-	intronic
CAediting_1179113	chr17_30902949_-	intronic
CAediting_1179114	chr17_30902963_-	intronic
CAediting_1179115	chr17_30902980_-	intronic
CAediting_1179116	chr17_30902995_-	intronic
CAediting_1179117	chr17_30903061_-	intronic
CAediting_1179118	chr17_30903074_-	intronic
CAediting_1179119	chr17_30903084_-	intronic
CAediting_1179120	chr17_30903332_-	intronic
CAediting_1179121	chr17_30903335_-	intronic
CAediting_1179122	chr17_30903355_-	intronic
CAediting_1179123	chr17_30903359_-	intronic
CAediting_1179124	chr17_30903365_-	intronic
CAediting_1179125	chr17_30903383_-	intronic
CAediting_1179126	chr17_30903391_-	intronic
CAediting_1179127	chr17_30903395_-	intronic
CAediting_1179128	chr17_30903396_-	intronic
CAediting_1179129	chr17_30903397_-	intronic
CAediting_1179130	chr17_30903400_-	intronic
CAediting_1179131	chr17_30903402_-	intronic
CAediting_1179132	chr17_30903403_-	intronic
CAediting_1179133	chr17_30903404_-	intronic
CAediting_1179134	chr17_30903406_-	intronic
CAediting_1179135	chr17_30903409_-	intronic
CAediting_1179136	chr17_30903420_-	intronic
CAediting_1179137	chr17_30903431_-	intronic
CAediting_1179138	chr17_30903451_-	intronic
CAediting_1179139	chr17_30903453_-	intronic
CAediting_1179140	chr17_30903454_-	intronic
CAediting_1179141	chr17_30903459_-	intronic
CAediting_1179142	chr17_30903460_-	intronic
CAediting_1179143	chr17_30903462_-	intronic
CAediting_1179144	chr17_30903474_-	intronic
CAediting_1179145	chr17_30903475_-	intronic
CAediting_1179146	chr17_30903476_-	intronic
CAediting_1179147	chr17_30903498_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1178996	chr17_30897382_-	SINE	Alu	FLAM_A
CAediting_1178997	chr17_30897391_-	SINE	Alu	FLAM_A
CAediting_1178998	chr17_30897401_-	SINE	Alu	FLAM_A
CAediting_1178999	chr17_30897420_-	SINE	Alu	FLAM_A
CAediting_1179000	chr17_30897613_-	SINE	Alu	AluSx4
CAediting_1179001	chr17_30897615_-	SINE	Alu	AluSx4
CAediting_1179002	chr17_30897627_-	SINE	Alu	AluSx4
CAediting_1179003	chr17_30897628_-	SINE	Alu	AluSx4
CAediting_1179004	chr17_30897629_-	SINE	Alu	AluSx4
CAediting_1179005	chr17_30897673_-	SINE	Alu	AluSx4
CAediting_1179006	chr17_30897678_-	SINE	Alu	AluSx4
CAediting_1179007	chr17_30897685_-	SINE	Alu	AluSx4
CAediting_1179008	chr17_30897707_-	SINE	Alu	AluSx4
CAediting_1179009	chr17_30897721_-	SINE	Alu	AluSx4
CAediting_1179010	chr17_30897722_-	SINE	Alu	AluSx4
CAediting_1179011	chr17_30897752_-	SINE	Alu	AluSx4
CAediting_1179012	chr17_30897766_-	SINE	Alu	AluSx4
CAediting_1179013	chr17_30897787_-	SINE	Alu	AluSx4
CAediting_1179014	chr17_30897788_-	SINE	Alu	AluSx4
CAediting_1179015	chr17_30897791_-	SINE	Alu	AluSx4
CAediting_1179016	chr17_30897792_-	SINE	Alu	AluSx4
CAediting_1179017	chr17_30897811_-	SINE	Alu	AluSx4
CAediting_1179018	chr17_30897836_-	SINE	Alu	AluSx4
CAediting_1179019	chr17_30897838_-	SINE	Alu	AluSx4
CAediting_1179020	chr17_30897976_-	SINE	Alu	AluJb
CAediting_1179021	chr17_30897980_-	SINE	Alu	AluJb
CAediting_1179022	chr17_30897998_-	SINE	Alu	AluJb
CAediting_1179023	chr17_30898010_-	SINE	Alu	AluJb
CAediting_1179024	chr17_30898011_-	SINE	Alu	AluJb
CAediting_1179025	chr17_30898012_-	SINE	Alu	AluJb
CAediting_1179026	chr17_30898020_-	SINE	Alu	AluJb
CAediting_1179027	chr17_30898034_-	SINE	Alu	AluJb
CAediting_1179028	chr17_30898037_-	SINE	Alu	AluJb
CAediting_1179029	chr17_30898051_-	SINE	Alu	AluJb
CAediting_1179030	chr17_30898063_-	SINE	Alu	AluJb
CAediting_1179031	chr17_30898075_-	SINE	Alu	AluJb
CAediting_1179032	chr17_30898083_-	SINE	Alu	AluJb
CAediting_1179033	chr17_30898089_-	SINE	Alu	AluJb
CAediting_1179034	chr17_30898102_-	SINE	Alu	AluJb
CAediting_1179035	chr17_30898111_-	SINE	Alu	AluJb
CAediting_1179036	chr17_30898116_-	SINE	Alu	AluJb
CAediting_1179037	chr17_30898121_-	SINE	Alu	AluJb
CAediting_1179038	chr17_30898127_-	SINE	Alu	AluJb
CAediting_1179039	chr17_30898129_-	SINE	Alu	AluJb
CAediting_1179040	chr17_30898135_-	SINE	Alu	AluJb
CAediting_1179041	chr17_30898139_-	SINE	Alu	AluJb
CAediting_1179042	chr17_30898141_-	SINE	Alu	AluJb
CAediting_1179043	chr17_30898142_-	SINE	Alu	AluJb
CAediting_1179044	chr17_30898165_-	SINE	Alu	AluJb
CAediting_1179045	chr17_30898168_-	SINE	Alu	AluJb
CAediting_1179046	chr17_30898169_-	SINE	Alu	AluJb
CAediting_1179047	chr17_30898190_-	SINE	Alu	AluJb
CAediting_1179048	chr17_30898195_-	SINE	Alu	AluJb
CAediting_1179049	chr17_30898201_-	SINE	Alu	AluJb
CAediting_1179050	chr17_30898208_-	SINE	Alu	AluJb
CAediting_1179051	chr17_30898216_-	SINE	Alu	AluJb
CAediting_1179052	chr17_30898225_-	SINE	Alu	AluJb
CAediting_1179053	chr17_30898233_-	SINE	Alu	AluJb
CAediting_1179054	chr17_30898241_-	SINE	Alu	AluJb
CAediting_1179055	chr17_30898364_-	SINE	Alu	AluSp
CAediting_1179056	chr17_30898383_-	SINE	Alu	AluSp
CAediting_1179057	chr17_30898384_-	SINE	Alu	AluSp
CAediting_1179058	chr17_30898408_-	SINE	Alu	AluSp
CAediting_1179059	chr17_30898423_-	SINE	Alu	AluSp
CAediting_1179060	chr17_30898428_-	SINE	Alu	AluSp
CAediting_1179061	chr17_30898432_-	SINE	Alu	AluSp
CAediting_1179062	chr17_30898459_-	SINE	Alu	AluSp
CAediting_1179063	chr17_30898474_-	SINE	Alu	AluSp
CAediting_1179064	chr17_30898484_-	SINE	Alu	AluSp
CAediting_1179065	chr17_30898510_-	SINE	Alu	AluSp
CAediting_1179066	chr17_30898532_-	SINE	Alu	AluSp
CAediting_1179067	chr17_30898552_-	SINE	Alu	AluSp
CAediting_1179068	chr17_30898557_-	SINE	Alu	AluSp
CAediting_1179069	chr17_30898582_-	SINE	Alu	AluSp
CAediting_1179070	chr17_30898623_-	SINE	Alu	AluSp
CAediting_1179071	chr17_30898624_-	SINE	Alu	AluSp
CAediting_1179072	chr17_30898632_-	SINE	Alu	AluSp
CAediting_1179073	chr17_30898845_-	SINE	Alu	AluJo
CAediting_1179074	chr17_30898864_-	SINE	Alu	AluJo
CAediting_1179075	chr17_30898865_-	SINE	Alu	AluJo
CAediting_1179076	chr17_30898892_-	SINE	Alu	AluJo
CAediting_1179077	chr17_30898896_-	SINE	Alu	AluJo
CAediting_1179078	chr17_30898902_-	SINE	Alu	AluJo
CAediting_1179079	chr17_30898910_-	SINE	Alu	AluJo
CAediting_1179080	chr17_30898913_-	SINE	Alu	AluJo
CAediting_1179081	chr17_30898918_-	SINE	Alu	AluJo
CAediting_1179082	chr17_30898919_-	SINE	Alu	AluJo
CAediting_1179083	chr17_30898935_-	SINE	Alu	AluJo
CAediting_1179084	chr17_30900025_-	SINE	MIR	MIRc
CAediting_1179085	chr17_30900080_-	SINE	MIR	MIRc
CAediting_1179086	chr17_30900699_-	SINE	Alu	AluY
CAediting_1179087	chr17_30900740_-	SINE	Alu	AluY
CAediting_1179088	chr17_30900801_-	SINE	Alu	AluY
CAediting_1179089	chr17_30900802_-	SINE	Alu	AluY
CAediting_1179090	chr17_30900807_-	SINE	Alu	AluY
CAediting_1179091	chr17_30900835_-	SINE	Alu	AluY
CAediting_1179092	chr17_30900843_-	SINE	Alu	AluY
CAediting_1179093	chr17_30900857_-	SINE	Alu	AluY
CAediting_1179094	chr17_30900901_-	SINE	Alu	AluY
CAediting_1179095	chr17_30901040_-	SINE	Alu	AluSx1
CAediting_1179096	chr17_30901141_-	SINE	Alu	AluSx1
CAediting_1179097	chr17_30901145_-	SINE	Alu	AluSx1
CAediting_1179098	chr17_30901149_-	SINE	Alu	AluSx1
CAediting_1179099	chr17_30901153_-	SINE	Alu	AluSx1
CAediting_1179100	chr17_30901158_-	SINE	Alu	AluSx1
CAediting_1179101	chr17_30901159_-	SINE	Alu	AluSx1
CAediting_1179102	chr17_30901165_-	SINE	Alu	AluSx1
CAediting_1179103	chr17_30901188_-	SINE	Alu	AluSx1
CAediting_1179104	chr17_30901189_-	SINE	Alu	AluSx1
CAediting_1179105	chr17_30901191_-	SINE	Alu	AluSx1
CAediting_1179106	chr17_30901194_-	SINE	Alu	AluSx1
CAediting_1179107	chr17_30901199_-	SINE	Alu	AluSx1
CAediting_1179108	chr17_30901200_-	SINE	Alu	AluSx1
CAediting_1179109	chr17_30901240_-	SINE	Alu	AluSx1
CAediting_1179110	chr17_30901293_-	SINE	Alu	AluSx1
CAediting_1179111	chr17_30902917_-	SINE	Alu	AluSc
CAediting_1179112	chr17_30902946_-	SINE	Alu	AluSc
CAediting_1179113	chr17_30902949_-	SINE	Alu	AluSc
CAediting_1179114	chr17_30902963_-	SINE	Alu	AluSc
CAediting_1179115	chr17_30902980_-	SINE	Alu	AluSc
CAediting_1179116	chr17_30902995_-	SINE	Alu	AluSc
CAediting_1179117	chr17_30903061_-	SINE	Alu	AluSc
CAediting_1179118	chr17_30903074_-	SINE	Alu	AluSc
CAediting_1179119	chr17_30903084_-	SINE	Alu	AluSc
CAediting_1179120	chr17_30903332_-	SINE	Alu	AluSc
CAediting_1179121	chr17_30903335_-	SINE	Alu	AluSc
CAediting_1179122	chr17_30903355_-	SINE	Alu	AluSc
CAediting_1179123	chr17_30903359_-	SINE	Alu	AluSc
CAediting_1179124	chr17_30903365_-	SINE	Alu	AluSc
CAediting_1179125	chr17_30903383_-	SINE	Alu	AluSc
CAediting_1179126	chr17_30903391_-	SINE	Alu	AluSc
CAediting_1179127	chr17_30903395_-	SINE	Alu	AluSc
CAediting_1179128	chr17_30903396_-	SINE	Alu	AluSc
CAediting_1179129	chr17_30903397_-	SINE	Alu	AluSc
CAediting_1179130	chr17_30903400_-	SINE	Alu	AluSc
CAediting_1179131	chr17_30903402_-	SINE	Alu	AluSc
CAediting_1179132	chr17_30903403_-	SINE	Alu	AluSc
CAediting_1179133	chr17_30903404_-	SINE	Alu	AluSc
CAediting_1179134	chr17_30903406_-	SINE	Alu	AluSc
CAediting_1179135	chr17_30903409_-	SINE	Alu	AluSc
CAediting_1179136	chr17_30903420_-	SINE	Alu	AluSc
CAediting_1179137	chr17_30903431_-	SINE	Alu	AluSc
CAediting_1179138	chr17_30903451_-	SINE	Alu	AluSc
CAediting_1179139	chr17_30903453_-	SINE	Alu	AluSc
CAediting_1179140	chr17_30903454_-	SINE	Alu	AluSc
CAediting_1179141	chr17_30903459_-	SINE	Alu	AluSc
CAediting_1179142	chr17_30903460_-	SINE	Alu	AluSc
CAediting_1179143	chr17_30903462_-	SINE	Alu	AluSc
CAediting_1179144	chr17_30903474_-	SINE	Alu	AluSc
CAediting_1179145	chr17_30903475_-	SINE	Alu	AluSc
CAediting_1179146	chr17_30903476_-	SINE	Alu	AluSc
CAediting_1179147	chr17_30903498_-	SINE	Alu	AluSc

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RNA A-to-I editing events in the alternative splicing sites for TEFM

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000172171.9.TEFM.

Correlation between RNA A-to-I editing and PSI for ENSG00000172171.9.TEFM.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TEFM

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TEFM

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TEFM

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1179084	chr17_30900025_-	ENSG00000172171.9	ENST00000580840	hsa-miR-3924	30900025	30900031	7mer-m8	30900024	30900046	151	-8.8
CAediting_1179084	chr17_30900025_-	ENSG00000172171.9	ENST00000580840	hsa-miR-5007-3p	30900021	30900028	8mer-1a	30900021	30900045	145	-7.65

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229415	chr17_67471547_+	ENSG00000172171.9	ENST00000580840	hsa-miR-548aa	30899745	30899751	7mer-m8	30899744	30899765	141	-9.65
CAediting_414656	chr5_72878640_+	ENSG00000172171.9	ENST00000580840	hsa-miR-4804-3p	30900001	30900008	8mer-1a	30900001	30900021	147	-15.63

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_228905	chr2_188297554_+	ENSG00000172171.9	ENST00000306049	hsa-miR-561-3p	30899458	30899464	7mer-m8	30899457	30899478	142	-3.71
CAediting_228905	chr2_188297554_+	ENSG00000172171.9	ENST00000580840	hsa-miR-561-3p	30899458	30899464	7mer-m8	30899457	30899478	142	-3.71

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TEFM

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for TEFM

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for TEFM

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for TEFM

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for TEFM

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for TEFM

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene