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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TBC1D17 (CAeditome ID:79735)

Gene summary for TBC1D17

check button Gene summary
Gene informationGene symbol

TBC1D17

Gene ID

79735

Gene nameTBC1 domain family member 17
Synonyms-
Cytomap

19q13.33

Type of geneprotein-coding
DescriptionTBC1 domain family member 17
Modification date20210518
UniProtAcc

Q9HA65

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TBC1D17

GO:0005829

TBC1 domain family member 17

17562788


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RNA A-to-I events for TBC1D17

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000104946.9

check button RNA A-to-I editing events in Cancer.
CAediting_1377261(49879348, +), CAediting_1377262(49879947, +), CAediting_1377263(49879993, +), CAediting_1377264(49880043, +), CAediting_1377265(49880118, +), CAediting_1377266(49880120, +), CAediting_1377267(49880145, +), CAediting_1377268(49885174, +), CAediting_1377269(49885192, +), CAediting_1377270(49885193, +), CAediting_1377271(49885209, +), CAediting_1377272(49885233, +), CAediting_1377273(49885238, +), CAediting_1377274(49885246, +), CAediting_1377275(49885261, +), CAediting_1377276(49885262, +), CAediting_1377277(49885271, +), CAediting_1377278(49885281, +), CAediting_1377279(49885284, +), CAediting_1377280(49885285, +), CAediting_1377281(49885286, +), CAediting_1377282(49885287, +), CAediting_1377283(49885290, +), CAediting_1377284(49885298, +), CAediting_1377285(49885314, +), CAediting_1377286(49885325, +), CAediting_1377287(49885330, +), CAediting_1377288(49885334, +), CAediting_1377289(49885338, +), CAediting_1377290(49885351, +), CAediting_1377291(49885357, +), CAediting_1377292(49885365, +), CAediting_1377293(49885366, +), CAediting_1377294(49885386, +), CAediting_1377295(49885394, +), CAediting_1377296(49885395, +), CAediting_1377297(49885397, +), CAediting_1377298(49885400, +), CAediting_1377299(49885402, +), CAediting_1377300(49885561, +), CAediting_1377301(49885584, +), CAediting_1377302(49885591, +), CAediting_1377303(49885597, +), CAediting_1377304(49885607, +), CAediting_1377305(49885639, +), CAediting_1377306(49885657, +), CAediting_1377307(49885692, +), CAediting_1377308(49885706, +), CAediting_1377309(49885717, +), CAediting_1377310(49885739, +), CAediting_1377311(49885743, +), CAediting_1377312(49885765, +), CAediting_1377313(49885773, +), CAediting_1377314(49885786, +), CAediting_1377315(49885788, +), CAediting_1377316(49885790, +), CAediting_1377317(49885793, +), CAediting_1377318(49885794, +), CAediting_1377319(49885796, +), CAediting_1377320(49885827, +), CAediting_1377321(49885853, +), CAediting_1377322(49885877, +), CAediting_1377323(49885890, +), CAediting_1377324(49885896, +), CAediting_1377325(49885927, +), CAediting_1377326(49886017, +), CAediting_1377327(49886025, +), CAediting_1377328(49886026, +), CAediting_1377329(49886047, +), CAediting_1377330(49886049, +), CAediting_1377331(49886051, +), CAediting_1377332(49886055, +), CAediting_1377333(49886060, +), CAediting_1377334(49886070, +), CAediting_1377335(49886081, +), CAediting_1377336(49886094, +), CAediting_1377337(49886103, +), CAediting_1377338(49886104, +), CAediting_1377339(49886115, +), CAediting_1377340(49886118, +), CAediting_1377341(49886119, +), CAediting_1377342(49886120, +), CAediting_1377343(49886124, +), CAediting_1377344(49886128, +), CAediting_1377345(49886133, +), CAediting_1377346(49886159, +), CAediting_1377347(49886160, +), CAediting_1377348(49886165, +), CAediting_1377349(49886173, +), CAediting_1377350(49886186, +), CAediting_1377351(49886195, +), CAediting_1377352(49886204, +), CAediting_1377353(49886205, +), CAediting_1377354(49886237, +), CAediting_1377355(49886255, +), CAediting_1377356(49886263, +), CAediting_1377357(49886835, +), CAediting_1377358(49886873, +), CAediting_1377359(49886895, +), CAediting_1377360(49886896, +), CAediting_1377361(49886913, +), CAediting_1377362(49886921, +), CAediting_1377363(49886922, +), CAediting_1377364(49886925, +), CAediting_1377365(49886935, +), CAediting_1377366(49886960, +), CAediting_1377367(49886961, +), CAediting_1377368(49886969, +), CAediting_1377369(49886975, +), CAediting_1377370(49886978, +), CAediting_1377371(49887017, +), CAediting_1377372(49887020, +), CAediting_1377373(49887022, +), CAediting_1377374(49887034, +), CAediting_1377375(49887037, +), CAediting_1377376(49887059, +), CAediting_1377377(49887071, +), CAediting_1377378(49887098, +), CAediting_1377379(49887099, +), CAediting_1377380(49887111, +),

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RNA editing positional annotations for TBC1D17 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1377261chr19_49879348_+exonic
CAediting_1377262chr19_49879947_+ncRNA_intronic
CAediting_1377263chr19_49879993_+ncRNA_intronic
CAediting_1377264chr19_49880043_+ncRNA_intronic
CAediting_1377265chr19_49880118_+ncRNA_intronic
CAediting_1377266chr19_49880120_+ncRNA_intronic
CAediting_1377267chr19_49880145_+ncRNA_intronic
CAediting_1377268chr19_49885174_+exonic
CAediting_1377269chr19_49885192_+exonic
CAediting_1377270chr19_49885193_+exonic
CAediting_1377271chr19_49885209_+exonic
CAediting_1377272chr19_49885233_+exonic
CAediting_1377273chr19_49885238_+ncRNA_intronic
CAediting_1377274chr19_49885246_+ncRNA_intronic
CAediting_1377275chr19_49885261_+ncRNA_intronic
CAediting_1377276chr19_49885262_+ncRNA_intronic
CAediting_1377277chr19_49885271_+ncRNA_intronic
CAediting_1377278chr19_49885281_+ncRNA_intronic
CAediting_1377279chr19_49885284_+ncRNA_intronic
CAediting_1377280chr19_49885285_+ncRNA_intronic
CAediting_1377281chr19_49885286_+ncRNA_intronic
CAediting_1377282chr19_49885287_+ncRNA_intronic
CAediting_1377283chr19_49885290_+ncRNA_intronic
CAediting_1377284chr19_49885298_+ncRNA_intronic
CAediting_1377285chr19_49885314_+ncRNA_intronic
CAediting_1377286chr19_49885325_+ncRNA_intronic
CAediting_1377287chr19_49885330_+ncRNA_intronic
CAediting_1377288chr19_49885334_+ncRNA_intronic
CAediting_1377289chr19_49885338_+ncRNA_intronic
CAediting_1377290chr19_49885351_+ncRNA_intronic
CAediting_1377291chr19_49885357_+ncRNA_intronic
CAediting_1377292chr19_49885365_+ncRNA_intronic
CAediting_1377293chr19_49885366_+ncRNA_intronic
CAediting_1377294chr19_49885386_+ncRNA_intronic
CAediting_1377295chr19_49885394_+ncRNA_intronic
CAediting_1377296chr19_49885395_+ncRNA_intronic
CAediting_1377297chr19_49885397_+ncRNA_intronic
CAediting_1377298chr19_49885400_+ncRNA_intronic
CAediting_1377299chr19_49885402_+ncRNA_intronic
CAediting_1377300chr19_49885561_+ncRNA_intronic
CAediting_1377301chr19_49885584_+ncRNA_intronic
CAediting_1377302chr19_49885591_+ncRNA_intronic
CAediting_1377303chr19_49885597_+ncRNA_intronic
CAediting_1377304chr19_49885607_+ncRNA_intronic
CAediting_1377305chr19_49885639_+ncRNA_intronic
CAediting_1377306chr19_49885657_+ncRNA_intronic
CAediting_1377307chr19_49885692_+ncRNA_intronic
CAediting_1377308chr19_49885706_+ncRNA_intronic
CAediting_1377309chr19_49885717_+ncRNA_intronic
CAediting_1377310chr19_49885739_+ncRNA_intronic
CAediting_1377311chr19_49885743_+ncRNA_intronic
CAediting_1377312chr19_49885765_+ncRNA_intronic
CAediting_1377313chr19_49885773_+ncRNA_intronic
CAediting_1377314chr19_49885786_+ncRNA_intronic
CAediting_1377315chr19_49885788_+ncRNA_intronic
CAediting_1377316chr19_49885790_+ncRNA_intronic
CAediting_1377317chr19_49885793_+ncRNA_intronic
CAediting_1377318chr19_49885794_+ncRNA_intronic
CAediting_1377319chr19_49885796_+ncRNA_intronic
CAediting_1377320chr19_49885827_+ncRNA_intronic
CAediting_1377321chr19_49885853_+ncRNA_intronic
CAediting_1377322chr19_49885877_+ncRNA_intronic
CAediting_1377323chr19_49885890_+ncRNA_intronic
CAediting_1377324chr19_49885896_+ncRNA_intronic
CAediting_1377325chr19_49885927_+ncRNA_intronic
CAediting_1377326chr19_49886017_+ncRNA_intronic
CAediting_1377327chr19_49886025_+ncRNA_intronic
CAediting_1377328chr19_49886026_+ncRNA_intronic
CAediting_1377329chr19_49886047_+ncRNA_intronic
CAediting_1377330chr19_49886049_+ncRNA_intronic
CAediting_1377331chr19_49886051_+ncRNA_intronic
CAediting_1377332chr19_49886055_+ncRNA_intronic
CAediting_1377333chr19_49886060_+ncRNA_intronic
CAediting_1377334chr19_49886070_+ncRNA_intronic
CAediting_1377335chr19_49886081_+ncRNA_intronic
CAediting_1377336chr19_49886094_+ncRNA_intronic
CAediting_1377337chr19_49886103_+ncRNA_intronic
CAediting_1377338chr19_49886104_+ncRNA_intronic
CAediting_1377339chr19_49886115_+ncRNA_intronic
CAediting_1377340chr19_49886118_+ncRNA_intronic
CAediting_1377341chr19_49886119_+ncRNA_intronic
CAediting_1377342chr19_49886120_+ncRNA_intronic
CAediting_1377343chr19_49886124_+ncRNA_intronic
CAediting_1377344chr19_49886128_+ncRNA_intronic
CAediting_1377345chr19_49886133_+ncRNA_intronic
CAediting_1377346chr19_49886159_+ncRNA_intronic
CAediting_1377347chr19_49886160_+ncRNA_intronic
CAediting_1377348chr19_49886165_+ncRNA_intronic
CAediting_1377349chr19_49886173_+ncRNA_intronic
CAediting_1377350chr19_49886186_+ncRNA_intronic
CAediting_1377351chr19_49886195_+ncRNA_intronic
CAediting_1377352chr19_49886204_+ncRNA_intronic
CAediting_1377353chr19_49886205_+ncRNA_intronic
CAediting_1377354chr19_49886237_+ncRNA_intronic
CAediting_1377355chr19_49886255_+ncRNA_intronic
CAediting_1377356chr19_49886263_+ncRNA_intronic
CAediting_1377357chr19_49886835_+ncRNA_exonic
CAediting_1377358chr19_49886873_+ncRNA_exonic
CAediting_1377359chr19_49886895_+ncRNA_exonic
CAediting_1377360chr19_49886896_+ncRNA_exonic
CAediting_1377361chr19_49886913_+ncRNA_exonic
CAediting_1377362chr19_49886921_+ncRNA_exonic
CAediting_1377363chr19_49886922_+ncRNA_exonic
CAediting_1377364chr19_49886925_+ncRNA_exonic
CAediting_1377365chr19_49886935_+ncRNA_exonic
CAediting_1377366chr19_49886960_+ncRNA_exonic
CAediting_1377367chr19_49886961_+ncRNA_exonic
CAediting_1377368chr19_49886969_+ncRNA_exonic
CAediting_1377369chr19_49886975_+ncRNA_exonic
CAediting_1377370chr19_49886978_+ncRNA_exonic
CAediting_1377371chr19_49887017_+ncRNA_exonic
CAediting_1377372chr19_49887020_+ncRNA_exonic
CAediting_1377373chr19_49887022_+ncRNA_exonic
CAediting_1377374chr19_49887034_+ncRNA_exonic
CAediting_1377375chr19_49887037_+ncRNA_exonic
CAediting_1377376chr19_49887059_+ncRNA_exonic
CAediting_1377377chr19_49887071_+ncRNA_exonic
CAediting_1377378chr19_49887098_+ncRNA_exonic
CAediting_1377379chr19_49887099_+ncRNA_exonic
CAediting_1377380chr19_49887111_+ncRNA_exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1377261chr19_49879348_+LTRERVLLTR67B
CAediting_1377262chr19_49879947_+SINEAluAluSp
CAediting_1377263chr19_49879993_+SINEAluAluSp
CAediting_1377264chr19_49880043_+SINEAluAluSp
CAediting_1377265chr19_49880118_+SINEAluAluSp
CAediting_1377266chr19_49880120_+SINEAluAluSp
CAediting_1377267chr19_49880145_+SINEAluAluSp
CAediting_1377268chr19_49885174_+SINEAluAluSp
CAediting_1377269chr19_49885192_+SINEAluAluSp
CAediting_1377270chr19_49885193_+SINEAluAluSp
CAediting_1377271chr19_49885209_+SINEAluAluSp
CAediting_1377272chr19_49885233_+SINEAluAluSp
CAediting_1377273chr19_49885238_+SINEAluAluSp
CAediting_1377274chr19_49885246_+SINEAluAluSp
CAediting_1377275chr19_49885261_+SINEAluAluSp
CAediting_1377276chr19_49885262_+SINEAluAluSp
CAediting_1377277chr19_49885271_+SINEAluAluSp
CAediting_1377278chr19_49885281_+SINEAluAluSp
CAediting_1377279chr19_49885284_+SINEAluAluSp
CAediting_1377280chr19_49885285_+SINEAluAluSp
CAediting_1377281chr19_49885286_+SINEAluAluSp
CAediting_1377282chr19_49885287_+SINEAluAluSp
CAediting_1377283chr19_49885290_+SINEAluAluSp
CAediting_1377284chr19_49885298_+SINEAluAluSp
CAediting_1377285chr19_49885314_+SINEAluAluSp
CAediting_1377286chr19_49885325_+SINEAluAluSp
CAediting_1377287chr19_49885330_+SINEAluAluSp
CAediting_1377288chr19_49885334_+SINEAluAluSp
CAediting_1377289chr19_49885338_+SINEAluAluSp
CAediting_1377290chr19_49885351_+SINEAluAluSp
CAediting_1377291chr19_49885357_+SINEAluAluSp
CAediting_1377292chr19_49885365_+SINEAluAluSp
CAediting_1377293chr19_49885366_+SINEAluAluSp
CAediting_1377294chr19_49885386_+SINEAluAluSp
CAediting_1377295chr19_49885394_+SINEAluAluSp
CAediting_1377296chr19_49885395_+SINEAluAluSp
CAediting_1377297chr19_49885397_+SINEAluAluSp
CAediting_1377298chr19_49885400_+SINEAluAluSp
CAediting_1377299chr19_49885402_+SINEAluAluSp
CAediting_1377300chr19_49885561_+SINEAluAluJr4
CAediting_1377301chr19_49885584_+SINEAluAluJr4
CAediting_1377302chr19_49885591_+SINEAluAluJr4
CAediting_1377303chr19_49885597_+SINEAluAluJr4
CAediting_1377304chr19_49885607_+SINEAluAluJr4
CAediting_1377305chr19_49885639_+SINEAluAluJr4
CAediting_1377306chr19_49885657_+SINEAluAluJr4
CAediting_1377307chr19_49885692_+SINEAluAluJr4
CAediting_1377308chr19_49885706_+SINEAluAluSz6
CAediting_1377309chr19_49885717_+SINEAluAluSz6
CAediting_1377310chr19_49885739_+SINEAluAluSz6
CAediting_1377311chr19_49885743_+SINEAluAluSz6
CAediting_1377312chr19_49885765_+SINEAluAluSz6
CAediting_1377313chr19_49885773_+SINEAluAluSz6
CAediting_1377314chr19_49885786_+SINEAluAluSz6
CAediting_1377315chr19_49885788_+SINEAluAluSz6
CAediting_1377316chr19_49885790_+SINEAluAluSz6
CAediting_1377317chr19_49885793_+SINEAluAluSz6
CAediting_1377318chr19_49885794_+SINEAluAluSz6
CAediting_1377319chr19_49885796_+SINEAluAluSz6
CAediting_1377320chr19_49885827_+SINEAluAluSz6
CAediting_1377321chr19_49885853_+SINEAluAluSz6
CAediting_1377322chr19_49885877_+SINEAluAluSz6
CAediting_1377323chr19_49885890_+SINEAluAluSz6
CAediting_1377324chr19_49885896_+SINEAluAluSz6
CAediting_1377325chr19_49885927_+SINEAluAluSz6
CAediting_1377326chr19_49886017_+SINEAluAluSx1
CAediting_1377327chr19_49886025_+SINEAluAluSx1
CAediting_1377328chr19_49886026_+SINEAluAluSx1
CAediting_1377329chr19_49886047_+SINEAluAluSx1
CAediting_1377330chr19_49886049_+SINEAluAluSx1
CAediting_1377331chr19_49886051_+SINEAluAluSx1
CAediting_1377332chr19_49886055_+SINEAluAluSx1
CAediting_1377333chr19_49886060_+SINEAluAluSx1
CAediting_1377334chr19_49886070_+SINEAluAluSx1
CAediting_1377335chr19_49886081_+SINEAluAluSx1
CAediting_1377336chr19_49886094_+SINEAluAluSx1
CAediting_1377337chr19_49886103_+SINEAluAluSx1
CAediting_1377338chr19_49886104_+SINEAluAluSx1
CAediting_1377339chr19_49886115_+SINEAluAluSx1
CAediting_1377340chr19_49886118_+SINEAluAluSx1
CAediting_1377341chr19_49886119_+SINEAluAluSx1
CAediting_1377342chr19_49886120_+SINEAluAluSx1
CAediting_1377343chr19_49886124_+SINEAluAluSx1
CAediting_1377344chr19_49886128_+SINEAluAluSx1
CAediting_1377345chr19_49886133_+SINEAluAluSx1
CAediting_1377346chr19_49886159_+SINEAluAluSx1
CAediting_1377347chr19_49886160_+SINEAluAluSx1
CAediting_1377348chr19_49886165_+SINEAluAluSx1
CAediting_1377349chr19_49886173_+SINEAluAluSx1
CAediting_1377350chr19_49886186_+SINEAluAluSx1
CAediting_1377351chr19_49886195_+SINEAluAluSx1
CAediting_1377352chr19_49886204_+SINEAluAluSx1
CAediting_1377353chr19_49886205_+SINEAluAluSx1
CAediting_1377354chr19_49886237_+SINEAluAluSx1
CAediting_1377355chr19_49886255_+SINEAluAluSx1
CAediting_1377356chr19_49886263_+SINEAluAluSx1
CAediting_1377357chr19_49886835_+SINEAluAluSx
CAediting_1377358chr19_49886873_+SINEAluAluSx
CAediting_1377359chr19_49886895_+SINEAluAluSx
CAediting_1377360chr19_49886896_+SINEAluAluSx
CAediting_1377361chr19_49886913_+SINEAluAluSx
CAediting_1377362chr19_49886921_+SINEAluAluSx
CAediting_1377363chr19_49886922_+SINEAluAluSx
CAediting_1377364chr19_49886925_+SINEAluAluSx
CAediting_1377365chr19_49886935_+SINEAluAluSx
CAediting_1377366chr19_49886960_+SINEAluAluSx
CAediting_1377367chr19_49886961_+SINEAluAluSx
CAediting_1377368chr19_49886969_+SINEAluAluSx
CAediting_1377369chr19_49886975_+SINEAluAluSx
CAediting_1377370chr19_49886978_+SINEAluAluSx
CAediting_1377371chr19_49887017_+SINEAluAluSx
CAediting_1377372chr19_49887020_+SINEAluAluSx
CAediting_1377373chr19_49887022_+SINEAluAluSx
CAediting_1377374chr19_49887034_+SINEAluAluSx
CAediting_1377375chr19_49887037_+SINEAluAluSx
CAediting_1377376chr19_49887059_+SINEAluAluSx
CAediting_1377377chr19_49887071_+SINEAluAluSx
CAediting_1377378chr19_49887098_+SINEAluAluSx
CAediting_1377379chr19_49887099_+SINEAluAluSx
CAediting_1377380chr19_49887111_+SINEAluAluSx

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RNA A-to-I editing events in the alternative splicing sites for TBC1D17

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_1377272chr19_49885233_+49885232:498852405SS2+0iGAGGTCAGG4.94GGGGTCAGG0.43
MEX_1CAediting_1377272chr19_49885233_+49885232:498852405SS2+0iGAGGTCAGG4.94GGGGTCAGG0.43
ESCAediting_1377273chr19_49885238_+49885232:498852405SS0+4iGAGGTCAGG4.94GAGGTCGGG1.63
MEX_1CAediting_1377273chr19_49885238_+49885232:498852405SS0+4iGAGGTCAGG4.94GAGGTCGGG1.63

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000104946.9.TBC1D17.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000104946.9.TBC1D17.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TBC1D17

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TBC1D17

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for TBC1D17

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1377277chr19_49885271_+ENSG00000104946.9ENST00000599049hsa-miR-6873-3p49885266498852716mer4988525049885272141.00-11.44
CAediting_1377277chr19_49885271_+ENSG00000104946.9ENST00000599049hsa-miR-6895-3p49885266498852727mer-m84988525249885273150.00-16.45
CAediting_1377278chr19_49885281_+ENSG00000104946.9ENST00000599049hsa-miR-374b-3p49885278498852858mer-1a4988526249885285147.00-12.19
CAediting_1377278chr19_49885281_+ENSG00000104946.9ENST00000599049hsa-miR-4756-3p49885275498852806mer4988526149885281146.00-18.17
CAediting_1377279chr19_49885284_+ENSG00000104946.9ENST00000599049hsa-miR-222-5p49885278498852858mer-1a4988526249885285146.00-17.00
CAediting_1377279chr19_49885284_+ENSG00000104946.9ENST00000599049hsa-miR-30a-3p49885280498852878mer-1a4988526449885287155.00-11.94
CAediting_1377279chr19_49885284_+ENSG00000104946.9ENST00000599049hsa-miR-30d-3p49885280498852878mer-1a4988526549885287159.00-14.03
CAediting_1377279chr19_49885284_+ENSG00000104946.9ENST00000599049hsa-miR-30e-3p49885280498852878mer-1a4988526449885287155.00-12.59
CAediting_1377279chr19_49885284_+ENSG00000104946.9ENST00000599049hsa-miR-93649885277498852848mer-1a4988526349885284153.00-21.30
CAediting_1377281chr19_49885286_+ENSG00000104946.9ENST00000599049hsa-miR-63049885284498852918mer-1a4988527049885291157.00-14.64
CAediting_1377288chr19_49885334_+ENSG00000104946.9ENST00000599049hsa-miR-1207-3p49885327498853337mer-m84988531849885334141.00-14.76
CAediting_1377288chr19_49885334_+ENSG00000104946.9ENST00000599049hsa-miR-64649885329498853357mer-m84988531849885336145.00-17.03
CAediting_1377293chr19_49885366_+ENSG00000104946.9ENST00000599049hsa-miR-3155a49885363498853697mer-m84988534949885370141.00-23.88
CAediting_1377293chr19_49885366_+ENSG00000104946.9ENST00000599049hsa-miR-3155b49885363498853697mer-m84988535249885370141.00-22.98
CAediting_1377293chr19_49885366_+ENSG00000104946.9ENST00000599049hsa-miR-48449885363498853697mer-m84988534949885370151.00-23.09
CAediting_1377295chr19_49885394_+ENSG00000104946.9ENST00000599049hsa-miR-4638-5p49885389498853968mer-1a4988537549885396148.00-18.84
CAediting_1377296chr19_49885395_+ENSG00000104946.9ENST00000599049hsa-miR-149-5p49885388498853947mer-m84988537049885395157.00-32.68
CAediting_1377297chr19_49885397_+ENSG00000104946.9ENST00000599049hsa-miR-212-5p49885390498853967mer-m84988537849885397158.00-25.98
CAediting_1377297chr19_49885397_+ENSG00000104946.9ENST00000599049hsa-miR-6808-3p49885395498854017mer-m84988538149885402158.00-29.15
CAediting_1377297chr19_49885397_+ENSG00000104946.9ENST00000599049hsa-miR-6813-3p49885391498853977mer-m84988537749885398150.00-18.32
CAediting_1377298chr19_49885400_+ENSG00000104946.9ENST00000599049hsa-miR-675-5p49885398498854047mer-1a4988538249885404141.00-25.01
CAediting_1377280chr19_49885285_+ENSG00000104946.9ENST00000599049hsa-miR-32549885278498852858mer-1a4988526549885285146.00-14.87
CAediting_1377283chr19_49885290_+ENSG00000104946.9ENST00000599049hsa-miR-153-5p49885283498852897mer-m84988527049885290146.00-10.94
CAediting_1377283chr19_49885290_+ENSG00000104946.9ENST00000599049hsa-miR-3680-3p49885287498852948mer-1a4988527249885294140.00-13.99
CAediting_1377283chr19_49885290_+ENSG00000104946.9ENST00000599049hsa-miR-3680-3p49885287498852948mer-1a4988527249885294140.00-13.99
CAediting_1377286chr19_49885325_+ENSG00000104946.9ENST00000599049hsa-miR-140-3p49885319498853257mer-m84988530649885326156.00-22.58
CAediting_1377291chr19_49885357_+ENSG00000104946.9ENST00000599049hsa-miR-443149885353498853597mer-m84988533949885360140.00-17.94
CAediting_1377292chr19_49885365_+ENSG00000104946.9ENST00000599049hsa-miR-990049885363498853697mer-m84988535149885370155.00-17.58
CAediting_1377294chr19_49885386_+ENSG00000104946.9ENST00000599049hsa-miR-6511b-3p49885385498853906mer4988536949885391140.00-25.73
CAediting_1377294chr19_49885386_+ENSG00000104946.9ENST00000599049hsa-miR-6511b-3p49885385498853906mer4988536949885391140.00-25.73

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1377294chr19_49885386_+ENSG00000104946.9ENST00000599049hsa-miR-118449885380498853867mer-m84988536249885387144-18.48
CAediting_1377294chr19_49885386_+ENSG00000104946.9ENST00000599049hsa-miR-118449885380498853867mer-m84988536249885387144-18.48
CAediting_1377294chr19_49885386_+ENSG00000104946.9ENST00000599049hsa-miR-118449885380498853867mer-m84988536249885387144-18.48
CAediting_1377289chr19_49885338_+ENSG00000104946.9ENST00000599049hsa-miR-120049885334498853407mer-m84988532049885341143-17.86
CAediting_1377285chr19_49885314_+ENSG00000104946.9ENST00000599049hsa-miR-1227-3p49885308498853158mer-1a4988529649885315145-24.3
CAediting_1377294chr19_49885386_+ENSG00000104946.9ENST00000599049hsa-miR-441849885381498853877mer-m84988537249885388146-20.25
CAediting_1377286chr19_49885325_+ENSG00000104946.9ENST00000599049hsa-miR-450b-3p49885323498853297mer-m84988530449885330147-20.75
CAediting_1377287chr19_49885330_+ENSG00000104946.9ENST00000599049hsa-miR-450b-3p49885323498853297mer-m84988530449885330147-20.75
CAediting_1377285chr19_49885314_+ENSG00000104946.9ENST00000599049hsa-miR-4715-3p49885307498853137mer-m84988529449885314146-22.42
CAediting_1377276chr19_49885262_+ENSG00000104946.9ENST00000599049hsa-miR-4716-5p49885260498852678mer-1a4988524649885267140-10.67
CAediting_1377287chr19_49885330_+ENSG00000104946.9ENST00000599049hsa-miR-4731-5p49885326498853316mer4988531249885332146-26.84
CAediting_1377284chr19_49885298_+ENSG00000104946.9ENST00000599049hsa-miR-4735-5p49885292498852987mer-m84988527849885299140-5.19
CAediting_1377275chr19_49885261_+ENSG00000104946.9ENST00000599049hsa-miR-4781-3p49885258498852647mer-m84988524249885265142-11.02
CAediting_1377276chr19_49885262_+ENSG00000104946.9ENST00000599049hsa-miR-4781-3p49885258498852647mer-m84988524249885265142-11.02
CAediting_1377292chr19_49885365_+ENSG00000104946.9ENST00000599049hsa-miR-498-5p49885359498853657mer-m84988534449885366142-9.71
CAediting_1377293chr19_49885366_+ENSG00000104946.9ENST00000599049hsa-miR-498-5p49885359498853657mer-m84988534449885366142-9.71
CAediting_1377294chr19_49885386_+ENSG00000104946.9ENST00000599049hsa-miR-509-3-5p49885381498853877mer-m84988536749885388143-17.63
CAediting_1377294chr19_49885386_+ENSG00000104946.9ENST00000599049hsa-miR-509-5p49885381498853877mer-m84988536849885388142-17.62
CAediting_1377294chr19_49885386_+ENSG00000104946.9ENST00000599049hsa-miR-509-5p49885381498853877mer-m84988536849885388142-17.62
CAediting_1377286chr19_49885325_+ENSG00000104946.9ENST00000599049hsa-miR-513a-5p49885318498853247mer-m84988530849885325152-21.07
CAediting_1377286chr19_49885325_+ENSG00000104946.9ENST00000599049hsa-miR-513a-5p49885318498853247mer-m84988530849885325152-21.07
CAediting_1377287chr19_49885330_+ENSG00000104946.9ENST00000599049hsa-miR-6506-5p49885324498853307mer-m84988530949885331144-16.3
CAediting_1377290chr19_49885351_+ENSG00000104946.9ENST00000599049hsa-miR-6747-3p49885346498853538mer-1a4988533149885353149-23.42
CAediting_1377278chr19_49885281_+ENSG00000104946.9ENST00000599049hsa-miR-6832-5p49885275498852817mer-m84988526049885282140-13.36
CAediting_1377294chr19_49885386_+ENSG00000104946.9ENST00000599049hsa-miR-7156-3p49885379498853857mer-m84988536449885386143-21.04
CAediting_1377297chr19_49885397_+ENSG00000104946.9ENST00000599049hsa-miR-807049885396498854016mer4988538249885402141-18.92
CAediting_1377298chr19_49885400_+ENSG00000104946.9ENST00000599049hsa-miR-807049885396498854016mer4988538249885402141-18.92
CAediting_1377299chr19_49885402_+ENSG00000104946.9ENST00000599049hsa-miR-807049885396498854016mer4988538249885402141-18.92

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_442554chr5_154685830_+ENSG00000104946.9ENST00000594996hsa-miR-130349882093498820997mer-m84988207349882100144-16.92
CAediting_86358chr1_109598906_+ENSG00000104946.9ENST00000594996hsa-miR-197-5p49882355498823606mer4988233849882361140-35.05
CAediting_1524209chrX_134546392_-ENSG00000104946.9ENST00000622860hsa-miR-503-5p49888502498885087mer-m84988848749888509152-21.1
CAediting_1524209chrX_134546392_-ENSG00000104946.9ENST00000594996hsa-miR-503-5p49879389498793957mer-m84987937049879396151-26.08
CAediting_1524209chrX_134546392_-ENSG00000104946.9ENST00000594984hsa-miR-503-5p49888502498885087mer-m84988848749888509152-21.1

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TBC1D17

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TBC1D17

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for TBC1D17

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for TBC1D17

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for TBC1D17

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TBC1D17

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource