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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: SH3D21 (CAeditome ID:79729) |
Gene summary for SH3D21 |
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Gene information | Gene symbol | SH3D21 | Gene ID | 79729 |
Gene name | SH3 domain containing 21 | |
Synonyms | C1orf113 | |
Cytomap | 1p34.3 | |
Type of gene | protein-coding | |
Description | SH3 domain-containing protein 21SH3 domain-containing protein C1orf113 | |
Modification date | 20210518 | |
UniProtAcc | A4FU49 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
SH3D21 | GO:0005654 | SH3 domain-containing protein 21 | 0000052 |
SH3D21 | GO:0005886 | SH3 domain-containing protein 21 | 0000052 |
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RNA A-to-I events for SH3D21 |
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CAediting_46369(36308836, +), CAediting_46370(36309245, +), CAediting_46371(36309252, +), CAediting_46372(36309258, +), CAediting_46373(36309974, +), CAediting_46374(36310206, +), CAediting_46375(36310215, +), CAediting_46376(36310216, +), CAediting_46377(36310228, +), CAediting_46378(36310435, +), CAediting_46379(36310454, +), CAediting_46380(36310482, +), CAediting_46381(36310494, +), CAediting_46382(36310495, +), CAediting_46383(36310530, +), CAediting_46384(36310535, +), CAediting_46385(36310536, +), CAediting_46386(36310570, +), CAediting_46387(36311009, +), CAediting_46388(36311500, +), CAediting_46389(36311501, +), CAediting_46390(36311773, +), CAediting_46391(36311794, +), CAediting_46392(36312105, +), CAediting_46393(36312206, +), CAediting_46394(36312209, +), CAediting_46395(36312222, +), CAediting_46396(36312234, +), CAediting_46397(36312780, +), CAediting_46398(36312836, +), CAediting_46399(36312897, +), CAediting_46400(36313221, +), CAediting_46401(36314589, +), CAediting_46402(36315491, +), CAediting_46403(36315495, +), CAediting_46404(36315558, +), CAediting_46405(36316376, +), CAediting_46406(36316380, +), CAediting_46407(36316949, +), CAediting_46408(36317581, +), CAediting_46409(36317747, +), CAediting_46410(36317761, +), CAediting_46411(36317764, +), CAediting_46412(36317773, +), CAediting_46413(36317811, +), CAediting_46414(36317826, +), CAediting_46415(36317838, +), CAediting_46416(36318563, +), CAediting_46417(36318833, +), CAediting_46418(36320733, +), CAediting_46419(36320734, +), CAediting_46420(36324535, +), |
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RNA editing positional annotations for SH3D21 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_46369 | chr1_36308836_+ | ncRNA_intronic |
CAediting_46370 | chr1_36309245_+ | ncRNA_intronic |
CAediting_46371 | chr1_36309252_+ | ncRNA_intronic |
CAediting_46372 | chr1_36309258_+ | ncRNA_intronic |
CAediting_46373 | chr1_36309974_+ | intronic |
CAediting_46374 | chr1_36310206_+ | intronic |
CAediting_46375 | chr1_36310215_+ | intronic |
CAediting_46376 | chr1_36310216_+ | intronic |
CAediting_46377 | chr1_36310228_+ | intronic |
CAediting_46378 | chr1_36310435_+ | intronic |
CAediting_46379 | chr1_36310454_+ | intronic |
CAediting_46380 | chr1_36310482_+ | intronic |
CAediting_46381 | chr1_36310494_+ | intronic |
CAediting_46382 | chr1_36310495_+ | intronic |
CAediting_46383 | chr1_36310530_+ | intronic |
CAediting_46384 | chr1_36310535_+ | intronic |
CAediting_46385 | chr1_36310536_+ | intronic |
CAediting_46386 | chr1_36310570_+ | intronic |
CAediting_46387 | chr1_36311009_+ | intronic |
CAediting_46388 | chr1_36311500_+ | intronic |
CAediting_46389 | chr1_36311501_+ | intronic |
CAediting_46390 | chr1_36311773_+ | intronic |
CAediting_46391 | chr1_36311794_+ | intronic |
CAediting_46392 | chr1_36312105_+ | intronic |
CAediting_46393 | chr1_36312206_+ | intronic |
CAediting_46394 | chr1_36312209_+ | intronic |
CAediting_46395 | chr1_36312222_+ | intronic |
CAediting_46396 | chr1_36312234_+ | intronic |
CAediting_46397 | chr1_36312780_+ | intronic |
CAediting_46398 | chr1_36312836_+ | intronic |
CAediting_46399 | chr1_36312897_+ | intronic |
CAediting_46400 | chr1_36313221_+ | intronic |
CAediting_46401 | chr1_36314589_+ | intronic |
CAediting_46402 | chr1_36315491_+ | intronic |
CAediting_46403 | chr1_36315495_+ | intronic |
CAediting_46404 | chr1_36315558_+ | intronic |
CAediting_46405 | chr1_36316376_+ | intronic |
CAediting_46406 | chr1_36316380_+ | intronic |
CAediting_46407 | chr1_36316949_+ | intronic |
CAediting_46408 | chr1_36317581_+ | intronic |
CAediting_46409 | chr1_36317747_+ | intronic |
CAediting_46410 | chr1_36317761_+ | intronic |
CAediting_46411 | chr1_36317764_+ | intronic |
CAediting_46412 | chr1_36317773_+ | intronic |
CAediting_46413 | chr1_36317811_+ | intronic |
CAediting_46414 | chr1_36317826_+ | intronic |
CAediting_46415 | chr1_36317838_+ | intronic |
CAediting_46416 | chr1_36318563_+ | intronic |
CAediting_46417 | chr1_36318833_+ | intronic |
CAediting_46418 | chr1_36320733_+ | exonic |
CAediting_46419 | chr1_36320734_+ | exonic |
CAediting_46420 | chr1_36324535_+ | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_46369 | chr1_36308836_+ | SINE | Alu | AluSq4 |
CAediting_46370 | chr1_36309245_+ | SINE | Alu | AluSz6 |
CAediting_46371 | chr1_36309252_+ | SINE | Alu | AluSz6 |
CAediting_46372 | chr1_36309258_+ | SINE | Alu | AluSz6 |
CAediting_46373 | chr1_36309974_+ | SINE | Alu | AluY |
CAediting_46374 | chr1_36310206_+ | SINE | Alu | AluY |
CAediting_46375 | chr1_36310215_+ | SINE | Alu | AluY |
CAediting_46376 | chr1_36310216_+ | SINE | Alu | AluY |
CAediting_46377 | chr1_36310228_+ | SINE | Alu | AluY |
CAediting_46378 | chr1_36310435_+ | SINE | Alu | AluSx |
CAediting_46379 | chr1_36310454_+ | SINE | Alu | AluSx |
CAediting_46380 | chr1_36310482_+ | SINE | Alu | AluSx |
CAediting_46381 | chr1_36310494_+ | SINE | Alu | AluSx |
CAediting_46382 | chr1_36310495_+ | SINE | Alu | AluSx |
CAediting_46383 | chr1_36310530_+ | SINE | Alu | AluSx |
CAediting_46384 | chr1_36310535_+ | SINE | Alu | AluSx |
CAediting_46385 | chr1_36310536_+ | SINE | Alu | AluSx |
CAediting_46386 | chr1_36310570_+ | SINE | Alu | AluSx |
CAediting_46387 | chr1_36311009_+ | SINE | Alu | AluSx1 |
CAediting_46388 | chr1_36311500_+ | SINE | Alu | AluY |
CAediting_46389 | chr1_36311501_+ | SINE | Alu | AluY |
CAediting_46390 | chr1_36311773_+ | SINE | Alu | AluJo |
CAediting_46391 | chr1_36311794_+ | SINE | Alu | AluJo |
CAediting_46392 | chr1_36312105_+ | SINE | Alu | AluY |
CAediting_46393 | chr1_36312206_+ | SINE | Alu | AluY |
CAediting_46394 | chr1_36312209_+ | SINE | Alu | AluY |
CAediting_46395 | chr1_36312222_+ | SINE | Alu | AluY |
CAediting_46396 | chr1_36312234_+ | SINE | Alu | AluY |
CAediting_46397 | chr1_36312780_+ | SINE | Alu | AluSx3 |
CAediting_46398 | chr1_36312836_+ | SINE | Alu | AluSx3 |
CAediting_46399 | chr1_36312897_+ | SINE | Alu | AluSx3 |
CAediting_46400 | chr1_36313221_+ | SINE | Alu | AluSc8 |
CAediting_46401 | chr1_36314589_+ | SINE | Alu | AluSx3 |
CAediting_46402 | chr1_36315491_+ | SINE | Alu | AluSx1 |
CAediting_46403 | chr1_36315495_+ | SINE | Alu | AluSx1 |
CAediting_46404 | chr1_36315558_+ | SINE | Alu | AluSx1 |
CAediting_46405 | chr1_36316376_+ | SINE | Alu | AluSx |
CAediting_46406 | chr1_36316380_+ | SINE | Alu | AluSx |
CAediting_46407 | chr1_36316949_+ | SINE | Alu | FLAM_C |
CAediting_46408 | chr1_36317581_+ | SINE | Alu | AluSq2 |
CAediting_46409 | chr1_36317747_+ | SINE | Alu | AluSq2 |
CAediting_46410 | chr1_36317761_+ | SINE | Alu | AluSq2 |
CAediting_46411 | chr1_36317764_+ | SINE | Alu | AluSq2 |
CAediting_46412 | chr1_36317773_+ | SINE | Alu | AluSq2 |
CAediting_46413 | chr1_36317811_+ | SINE | Alu | AluSq2 |
CAediting_46414 | chr1_36317826_+ | SINE | Alu | AluSq2 |
CAediting_46415 | chr1_36317838_+ | SINE | Alu | AluSq2 |
CAediting_46416 | chr1_36318563_+ | SINE | Alu | AluSz |
CAediting_46417 | chr1_36318833_+ | SINE | Alu | AluY |
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RNA A-to-I editing events in the alternative splicing sites for SH3D21 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_46409 | chr1_36317747_+ | 36317725:36317747 | 3SS | 3+0i | GGCTAATTTTTGTATTTTTAGTA | -7.85 | GGCTAATTTTTGTATTTTTAGTG | -7.79 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SH3D21 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for SH3D21 |
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The effects of the RNA editing to the miRNA binding sites for SH3D21 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_228905 | chr2_188297554_+ | ENSG00000214193.8 | ENST00000453908 | hsa-miR-561-3p | 36321211 | 36321217 | 7mer-m8 | 36321198 | 36321218 | 148 | -17.38 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for SH3D21 |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_46418 | ENST00000453908.5 | chr1_36320733_+ | -1016.80 | -1016.00 | -1019.70 |
CAediting_46419 | ENST00000453908.5 | chr1_36320734_+ | -1020.00 | -1016.00 | -1019.70 |
CAediting_46418 | ENST00000480549.4 | chr1_36320733_+ | -1318.30 | -1316.10 | -1326.70 |
CAediting_46419 | ENST00000480549.4 | chr1_36320734_+ | -1318.90 | -1316.10 | -1326.70 |
CAediting_46420 | ENST00000480549.4 | chr1_36324535_+ | -1320.80 | -1316.10 | -1326.70 |
CAediting_46418 | ENST00000505871.4 | chr1_36320733_+ | -836.90 | -836.10 | -839.80 |
CAediting_46419 | ENST00000505871.4 | chr1_36320734_+ | -840.10 | -836.10 | -839.80 |
CAediting_46418 | ENST00000474766.1 | chr1_36320733_+ | -928.20 | -926.00 | -931.90 |
CAediting_46419 | ENST00000474766.1 | chr1_36320734_+ | -928.80 | -926.00 | -931.90 |
CAediting_46418 | ENST00000508854.1 | chr1_36320733_+ | -395.00 | -394.20 | -398.60 |
CAediting_46419 | ENST00000508854.1 | chr1_36320734_+ | -395.20 | -394.20 | -398.60 |
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Relation with ADAR for SH3D21 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_46420 | chr1_36324535_+ | 0.0207963640662263 | 0.230935457695882 | . | . | . | . |
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Relation with cancer stages for SH3D21 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for SH3D21 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for SH3D21 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SH3D21 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |