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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: OGFOD3 (CAeditome ID:79701)

Gene summary for OGFOD3

check button Gene summary
Gene informationGene symbol

OGFOD3

Gene ID

79701

Gene name2-oxoglutarate and iron dependent oxygenase domain containing 3
SynonymsC17orf101
Cytomap

17q25.3

Type of geneprotein-coding
Description2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3PKHD domain-containing transmembrane protein C17orf101
Modification date20210518
UniProtAcc

Q6PK18

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for OGFOD3

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000181396.11
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1247972(82389518, -), CAediting_1247973(82389520, -), CAediting_1247974(82389530, -), CAediting_1247975(82389534, -), CAediting_1247976(82389535, -), CAediting_1247977(82389542, -), CAediting_1247978(82389550, -), CAediting_1247979(82389560, -), CAediting_1247980(82389568, -), CAediting_1247981(82389575, -), CAediting_1247982(82389579, -), CAediting_1247983(82389581, -), CAediting_1247984(82389586, -), CAediting_1247985(82389595, -), CAediting_1247986(82389614, -), CAediting_1247987(82389618, -), CAediting_1247988(82389633, -), CAediting_1247989(82389665, -), CAediting_1247990(82389671, -), CAediting_1247991(82389704, -), CAediting_1247992(82389708, -), CAediting_1247993(82389723, -), CAediting_1247994(82389737, -), CAediting_1247995(82389742, -), CAediting_1247996(82389747, -), CAediting_1247997(82389755, -), CAediting_1247998(82389756, -), CAediting_1247999(82389772, -), CAediting_1248000(82389777, -), CAediting_1248001(82389778, -), CAediting_1248002(82389830, -), CAediting_1248003(82389838, -), CAediting_1248004(82389852, -), CAediting_1248005(82389855, -), CAediting_1248006(82389861, -), CAediting_1248007(82389872, -), CAediting_1248008(82389873, -), CAediting_1248009(82389886, -), CAediting_1248010(82389899, -), CAediting_1248011(82389909, -), CAediting_1248012(82389912, -), CAediting_1248013(82389920, -), CAediting_1248014(82389921, -), CAediting_1248015(82389934, -), CAediting_1248016(82389937, -), CAediting_1248017(82389952, -), CAediting_1248018(82389958, -), CAediting_1248019(82389959, -), CAediting_1248020(82389964, -), CAediting_1248021(82389974, -), CAediting_1248022(82389975, -), CAediting_1248023(82389983, -), CAediting_1248024(82389995, -), CAediting_1248025(82390007, -), CAediting_1248026(82390008, -), CAediting_1248027(82390013, -), CAediting_1248028(82390019, -), CAediting_1248029(82391378, -), CAediting_1248030(82391397, -), CAediting_1248031(82391415, -), CAediting_1248032(82391425, -), CAediting_1248033(82391428, -), CAediting_1248034(82391439, -), CAediting_1248035(82391448, -), CAediting_1248036(82391449, -), CAediting_1248037(82391454, -), CAediting_1248038(82391458, -), CAediting_1248039(82391464, -), CAediting_1248040(82391471, -), CAediting_1248041(82391480, -), CAediting_1248042(82391481, -), CAediting_1248043(82391499, -), CAediting_1248044(82391514, -), CAediting_1248045(82391515, -), CAediting_1248046(82391516, -), CAediting_1248047(82391522, -), CAediting_1248048(82391524, -), CAediting_1248049(82391525, -), CAediting_1248050(82391540, -), CAediting_1248051(82391567, -), CAediting_1248052(82391594, -), CAediting_1248053(82391600, -), CAediting_1248054(82393837, -), CAediting_1248055(82394042, -), CAediting_1248056(82394052, -), CAediting_1248057(82394057, -), CAediting_1248058(82394058, -), CAediting_1248059(82394079, -), CAediting_1248060(82394086, -), CAediting_1248061(82394095, -), CAediting_1248062(82394118, -), CAediting_1248063(82394128, -), CAediting_1248064(82394154, -), CAediting_1248065(82394162, -), CAediting_1248066(82394168, -), CAediting_1248067(82394169, -), CAediting_1248068(82394171, -), CAediting_1248069(82394185, -), CAediting_1248070(82394193, -), CAediting_1248071(82394195, -), CAediting_1248072(82394196, -), CAediting_1248073(82394216, -), CAediting_1248074(82394224, -), CAediting_1248075(82394241, -), CAediting_1248076(82394254, -), CAediting_1248077(82395129, -), CAediting_1248078(82395156, -), CAediting_1248079(82395199, -), CAediting_1248080(82395228, -), CAediting_1248081(82395234, -), CAediting_1248082(82395235, -), CAediting_1248083(82395236, -), CAediting_1248084(82395251, -), CAediting_1248085(82395278, -), CAediting_1248086(82395303, -), CAediting_1248087(82395326, -), CAediting_1248088(82398636, -), CAediting_1248089(82401347, -), CAediting_1248090(82401348, -), CAediting_1248091(82402327, -), CAediting_1248092(82406775, -), CAediting_1248093(82409813, -), CAediting_1248094(82410804, -), CAediting_1248095(82410898, -), CAediting_1248096(82414236, -), CAediting_1248097(82414337, -), CAediting_1248098(82414356, -), CAediting_1248099(82414364, -),

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RNA editing positional annotations for OGFOD3 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1247972chr17_82389518_-UTR3
CAediting_1247973chr17_82389520_-UTR3
CAediting_1247974chr17_82389530_-UTR3
CAediting_1247975chr17_82389534_-UTR3
CAediting_1247976chr17_82389535_-UTR3
CAediting_1247977chr17_82389542_-UTR3
CAediting_1247978chr17_82389550_-UTR3
CAediting_1247979chr17_82389560_-UTR3
CAediting_1247980chr17_82389568_-UTR3
CAediting_1247981chr17_82389575_-UTR3
CAediting_1247982chr17_82389579_-UTR3
CAediting_1247983chr17_82389581_-UTR3
CAediting_1247984chr17_82389586_-UTR3
CAediting_1247985chr17_82389595_-UTR3
CAediting_1247986chr17_82389614_-UTR3
CAediting_1247987chr17_82389618_-UTR3
CAediting_1247988chr17_82389633_-UTR3
CAediting_1247989chr17_82389665_-UTR3
CAediting_1247990chr17_82389671_-UTR3
CAediting_1247991chr17_82389704_-UTR3
CAediting_1247992chr17_82389708_-UTR3
CAediting_1247993chr17_82389723_-UTR3
CAediting_1247994chr17_82389737_-UTR3
CAediting_1247995chr17_82389742_-UTR3
CAediting_1247996chr17_82389747_-UTR3
CAediting_1247997chr17_82389755_-UTR3
CAediting_1247998chr17_82389756_-UTR3
CAediting_1247999chr17_82389772_-UTR3
CAediting_1248000chr17_82389777_-UTR3
CAediting_1248001chr17_82389778_-UTR3
CAediting_1248002chr17_82389830_-UTR3
CAediting_1248003chr17_82389838_-UTR3
CAediting_1248004chr17_82389852_-UTR3
CAediting_1248005chr17_82389855_-UTR3
CAediting_1248006chr17_82389861_-UTR3
CAediting_1248007chr17_82389872_-UTR3
CAediting_1248008chr17_82389873_-UTR3
CAediting_1248009chr17_82389886_-UTR3
CAediting_1248010chr17_82389899_-UTR3
CAediting_1248011chr17_82389909_-UTR3
CAediting_1248012chr17_82389912_-UTR3
CAediting_1248013chr17_82389920_-UTR3
CAediting_1248014chr17_82389921_-UTR3
CAediting_1248015chr17_82389934_-UTR3
CAediting_1248016chr17_82389937_-UTR3
CAediting_1248017chr17_82389952_-UTR3
CAediting_1248018chr17_82389958_-UTR3
CAediting_1248019chr17_82389959_-UTR3
CAediting_1248020chr17_82389964_-UTR3
CAediting_1248021chr17_82389974_-UTR3
CAediting_1248022chr17_82389975_-UTR3
CAediting_1248023chr17_82389983_-UTR3
CAediting_1248024chr17_82389995_-UTR3
CAediting_1248025chr17_82390007_-UTR3
CAediting_1248026chr17_82390008_-UTR3
CAediting_1248027chr17_82390013_-UTR3
CAediting_1248028chr17_82390019_-UTR3
CAediting_1248029chr17_82391378_-ncRNA_exonic
CAediting_1248030chr17_82391397_-ncRNA_exonic
CAediting_1248031chr17_82391415_-ncRNA_exonic
CAediting_1248032chr17_82391425_-ncRNA_exonic
CAediting_1248033chr17_82391428_-ncRNA_exonic
CAediting_1248034chr17_82391439_-ncRNA_exonic
CAediting_1248035chr17_82391448_-ncRNA_exonic
CAediting_1248036chr17_82391449_-ncRNA_exonic
CAediting_1248037chr17_82391454_-ncRNA_exonic
CAediting_1248038chr17_82391458_-ncRNA_exonic
CAediting_1248039chr17_82391464_-ncRNA_exonic
CAediting_1248040chr17_82391471_-ncRNA_exonic
CAediting_1248041chr17_82391480_-ncRNA_exonic
CAediting_1248042chr17_82391481_-ncRNA_exonic
CAediting_1248043chr17_82391499_-ncRNA_exonic
CAediting_1248044chr17_82391514_-ncRNA_exonic
CAediting_1248045chr17_82391515_-ncRNA_exonic
CAediting_1248046chr17_82391516_-ncRNA_exonic
CAediting_1248047chr17_82391522_-ncRNA_exonic
CAediting_1248048chr17_82391524_-ncRNA_exonic
CAediting_1248049chr17_82391525_-ncRNA_exonic
CAediting_1248050chr17_82391540_-ncRNA_exonic
CAediting_1248051chr17_82391567_-ncRNA_exonic
CAediting_1248052chr17_82391594_-ncRNA_exonic
CAediting_1248053chr17_82391600_-ncRNA_exonic
CAediting_1248054chr17_82393837_-ncRNA_exonic
CAediting_1248055chr17_82394042_-ncRNA_intronic
CAediting_1248056chr17_82394052_-ncRNA_intronic
CAediting_1248057chr17_82394057_-ncRNA_intronic
CAediting_1248058chr17_82394058_-ncRNA_intronic
CAediting_1248059chr17_82394079_-ncRNA_intronic
CAediting_1248060chr17_82394086_-ncRNA_intronic
CAediting_1248061chr17_82394095_-ncRNA_intronic
CAediting_1248062chr17_82394118_-ncRNA_intronic
CAediting_1248063chr17_82394128_-ncRNA_intronic
CAediting_1248064chr17_82394154_-ncRNA_intronic
CAediting_1248065chr17_82394162_-ncRNA_intronic
CAediting_1248066chr17_82394168_-ncRNA_intronic
CAediting_1248067chr17_82394169_-ncRNA_intronic
CAediting_1248068chr17_82394171_-ncRNA_intronic
CAediting_1248069chr17_82394185_-ncRNA_intronic
CAediting_1248070chr17_82394193_-ncRNA_intronic
CAediting_1248071chr17_82394195_-ncRNA_intronic
CAediting_1248072chr17_82394196_-ncRNA_intronic
CAediting_1248073chr17_82394216_-ncRNA_intronic
CAediting_1248074chr17_82394224_-ncRNA_intronic
CAediting_1248075chr17_82394241_-ncRNA_intronic
CAediting_1248076chr17_82394254_-ncRNA_intronic
CAediting_1248077chr17_82395129_-ncRNA_intronic
CAediting_1248078chr17_82395156_-ncRNA_intronic
CAediting_1248079chr17_82395199_-ncRNA_intronic
CAediting_1248080chr17_82395228_-ncRNA_intronic
CAediting_1248081chr17_82395234_-ncRNA_intronic
CAediting_1248082chr17_82395235_-ncRNA_intronic
CAediting_1248083chr17_82395236_-ncRNA_intronic
CAediting_1248084chr17_82395251_-ncRNA_intronic
CAediting_1248085chr17_82395278_-ncRNA_intronic
CAediting_1248086chr17_82395303_-ncRNA_intronic
CAediting_1248087chr17_82395326_-ncRNA_intronic
CAediting_1248088chr17_82398636_-ncRNA_intronic
CAediting_1248089chr17_82401347_-ncRNA_exonic
CAediting_1248090chr17_82401348_-ncRNA_exonic
CAediting_1248091chr17_82402327_-ncRNA_intronic
CAediting_1248092chr17_82406775_-ncRNA_intronic
CAediting_1248093chr17_82409813_-ncRNA_intronic
CAediting_1248094chr17_82410804_-ncRNA_intronic
CAediting_1248095chr17_82410898_-ncRNA_intronic
CAediting_1248096chr17_82414236_-ncRNA_intronic
CAediting_1248097chr17_82414337_-ncRNA_intronic
CAediting_1248098chr17_82414356_-ncRNA_intronic
CAediting_1248099chr17_82414364_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1247972chr17_82389518_-SINEAluAluJb
CAediting_1247973chr17_82389520_-SINEAluAluJb
CAediting_1247974chr17_82389530_-SINEAluAluJb
CAediting_1247975chr17_82389534_-SINEAluAluJb
CAediting_1247976chr17_82389535_-SINEAluAluJb
CAediting_1247977chr17_82389542_-SINEAluAluJb
CAediting_1247978chr17_82389550_-SINEAluAluJb
CAediting_1247979chr17_82389560_-SINEAluAluJb
CAediting_1247980chr17_82389568_-SINEAluAluJb
CAediting_1247981chr17_82389575_-SINEAluAluJb
CAediting_1247982chr17_82389579_-SINEAluAluJb
CAediting_1247983chr17_82389581_-SINEAluAluJb
CAediting_1247984chr17_82389586_-SINEAluAluJb
CAediting_1247985chr17_82389595_-SINEAluAluJb
CAediting_1247986chr17_82389614_-SINEAluAluJb
CAediting_1247987chr17_82389618_-SINEAluAluJb
CAediting_1247988chr17_82389633_-SINEAluAluJb
CAediting_1247989chr17_82389665_-SINEAluAluJb
CAediting_1247990chr17_82389671_-SINEAluAluJb
CAediting_1247991chr17_82389704_-SINEAluAluJb
CAediting_1247992chr17_82389708_-SINEAluAluJb
CAediting_1247993chr17_82389723_-SINEAluAluJb
CAediting_1247994chr17_82389737_-SINEAluAluJb
CAediting_1247995chr17_82389742_-SINEAluAluJb
CAediting_1247996chr17_82389747_-SINEAluAluJb
CAediting_1247997chr17_82389755_-SINEAluAluJb
CAediting_1247998chr17_82389756_-SINEAluAluJb
CAediting_1247999chr17_82389772_-SINEAluAluJb
CAediting_1248000chr17_82389777_-SINEAluAluJb
CAediting_1248001chr17_82389778_-SINEAluAluJb
CAediting_1248002chr17_82389830_-SINEAluAluY
CAediting_1248003chr17_82389838_-SINEAluAluY
CAediting_1248004chr17_82389852_-SINEAluAluY
CAediting_1248005chr17_82389855_-SINEAluAluY
CAediting_1248006chr17_82389861_-SINEAluAluY
CAediting_1248007chr17_82389872_-SINEAluAluY
CAediting_1248008chr17_82389873_-SINEAluAluY
CAediting_1248009chr17_82389886_-SINEAluAluY
CAediting_1248010chr17_82389899_-SINEAluAluY
CAediting_1248011chr17_82389909_-SINEAluAluY
CAediting_1248012chr17_82389912_-SINEAluAluY
CAediting_1248013chr17_82389920_-SINEAluAluY
CAediting_1248014chr17_82389921_-SINEAluAluY
CAediting_1248015chr17_82389934_-SINEAluAluY
CAediting_1248016chr17_82389937_-SINEAluAluY
CAediting_1248017chr17_82389952_-SINEAluAluY
CAediting_1248018chr17_82389958_-SINEAluAluY
CAediting_1248019chr17_82389959_-SINEAluAluY
CAediting_1248020chr17_82389964_-SINEAluAluY
CAediting_1248021chr17_82389974_-SINEAluAluY
CAediting_1248022chr17_82389975_-SINEAluAluY
CAediting_1248023chr17_82389983_-SINEAluAluY
CAediting_1248024chr17_82389995_-SINEAluAluY
CAediting_1248025chr17_82390007_-SINEAluAluY
CAediting_1248026chr17_82390008_-SINEAluAluY
CAediting_1248027chr17_82390013_-SINEAluAluY
CAediting_1248028chr17_82390019_-SINEAluAluY
CAediting_1248029chr17_82391378_-SINEAluAluSz
CAediting_1248030chr17_82391397_-SINEAluAluSz
CAediting_1248031chr17_82391415_-SINEAluAluSz
CAediting_1248032chr17_82391425_-SINEAluAluSz
CAediting_1248033chr17_82391428_-SINEAluAluSz
CAediting_1248034chr17_82391439_-SINEAluAluSz
CAediting_1248035chr17_82391448_-SINEAluAluSz
CAediting_1248036chr17_82391449_-SINEAluAluSz
CAediting_1248037chr17_82391454_-SINEAluAluSz
CAediting_1248038chr17_82391458_-SINEAluAluSz
CAediting_1248039chr17_82391464_-SINEAluAluSz
CAediting_1248040chr17_82391471_-SINEAluAluSz
CAediting_1248041chr17_82391480_-SINEAluAluSz
CAediting_1248042chr17_82391481_-SINEAluAluSz
CAediting_1248043chr17_82391499_-SINEAluAluSz
CAediting_1248044chr17_82391514_-SINEAluAluSz
CAediting_1248045chr17_82391515_-SINEAluAluSz
CAediting_1248046chr17_82391516_-SINEAluAluSz
CAediting_1248047chr17_82391522_-SINEAluAluSz
CAediting_1248048chr17_82391524_-SINEAluAluSz
CAediting_1248049chr17_82391525_-SINEAluAluSz
CAediting_1248050chr17_82391540_-SINEAluAluSz
CAediting_1248051chr17_82391567_-SINEAluAluSz
CAediting_1248052chr17_82391594_-SINEAluAluSz
CAediting_1248053chr17_82391600_-SINEAluAluSz
CAediting_1248055chr17_82394042_-SINEAluAluY
CAediting_1248056chr17_82394052_-SINEAluAluY
CAediting_1248057chr17_82394057_-SINEAluAluY
CAediting_1248058chr17_82394058_-SINEAluAluY
CAediting_1248059chr17_82394079_-SINEAluAluY
CAediting_1248060chr17_82394086_-SINEAluAluY
CAediting_1248061chr17_82394095_-SINEAluAluY
CAediting_1248062chr17_82394118_-SINEAluAluY
CAediting_1248063chr17_82394128_-SINEAluAluY
CAediting_1248064chr17_82394154_-SINEAluAluY
CAediting_1248065chr17_82394162_-SINEAluAluY
CAediting_1248066chr17_82394168_-SINEAluAluY
CAediting_1248067chr17_82394169_-SINEAluAluY
CAediting_1248068chr17_82394171_-SINEAluAluY
CAediting_1248069chr17_82394185_-SINEAluAluY
CAediting_1248070chr17_82394193_-SINEAluAluY
CAediting_1248071chr17_82394195_-SINEAluAluY
CAediting_1248072chr17_82394196_-SINEAluAluY
CAediting_1248073chr17_82394216_-SINEAluAluY
CAediting_1248074chr17_82394224_-SINEAluAluY
CAediting_1248075chr17_82394241_-SINEAluAluY
CAediting_1248076chr17_82394254_-SINEAluAluY
CAediting_1248077chr17_82395129_-SINEAluAluJb
CAediting_1248078chr17_82395156_-SINEAluAluJb
CAediting_1248079chr17_82395199_-SINEAluAluJb
CAediting_1248080chr17_82395228_-SINEAluAluJb
CAediting_1248081chr17_82395234_-SINEAluAluJb
CAediting_1248082chr17_82395235_-SINEAluAluJb
CAediting_1248083chr17_82395236_-SINEAluAluJb
CAediting_1248084chr17_82395251_-SINEAluAluJb
CAediting_1248085chr17_82395278_-SINEAluAluJb
CAediting_1248086chr17_82395303_-SINEAluAluJb
CAediting_1248087chr17_82395326_-SINEAluAluJb
CAediting_1248088chr17_82398636_-SINEAluAluSx1
CAediting_1248089chr17_82401347_-SINEAluAluY
CAediting_1248090chr17_82401348_-SINEAluAluY
CAediting_1248091chr17_82402327_-SINEAluAluSz
CAediting_1248092chr17_82406775_-SINEAluAluJb
CAediting_1248093chr17_82409813_-SINEAluAluSg
CAediting_1248094chr17_82410804_-SINEAluAluSx
CAediting_1248095chr17_82410898_-SINEAluAluSx
CAediting_1248096chr17_82414236_-SINEAluAluJr
CAediting_1248097chr17_82414337_-SINEAluAluJr
CAediting_1248098chr17_82414356_-SINEAluAluJr
CAediting_1248099chr17_82414364_-SINEAluAluJr

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RNA A-to-I editing events in the alternative splicing sites for OGFOD3

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000181396.11.OGFOD3.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000181396.11.OGFOD3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for OGFOD3

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for OGFOD3

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for OGFOD3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_86358chr1_109598906_+ENSG00000181396.11ENST00000329197hsa-miR-197-5p82392328823923336mer8239231582392337161-34.7
CAediting_86358chr1_109598906_+ENSG00000181396.11ENST00000329197hsa-miR-197-5p82392316823923227mer-m88239231582392337161-34.7
CAediting_86358chr1_109598906_+ENSG00000181396.11ENST00000329197hsa-miR-197-5p82392096823921038mer-1a8239209682392119152-19.85
CAediting_86358chr1_109598906_+ENSG00000181396.11ENST00000583897hsa-miR-197-5p82392328823923336mer8239231582392337161-34.7
CAediting_86358chr1_109598906_+ENSG00000181396.11ENST00000583897hsa-miR-197-5p82392316823923227mer-m88239231582392337161-34.7
CAediting_1368054chr19_46709310_-ENSG00000181396.11ENST00000580445hsa-miR-320e82404065824040728mer-1a8240406582404082143-15.26
CAediting_604450chr7_133034877_-ENSG00000181396.11ENST00000580445hsa-miR-365482404068824040747mer-m88240406782404085146-20.02
CAediting_442554chr5_154685830_+ENSG00000181396.11ENST00000580445hsa-miR-130382398273823982797mer-m88239827282398290143-12.82

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for OGFOD3

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for OGFOD3

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BLCACAediting_1247981chr17_82389575_-0.03338201782565250.27284622000356....
LGGCAediting_1247981chr17_82389575_-2.60901004896105e-060.364952466627780.006627434601139520.215845695472895..
BRCACAediting_1247981chr17_82389575_-2.55716109186484e-120.34633420339285....
CESCCAediting_1247981chr17_82389575_-5.40153533293401e-070.640693356439919....
LUADCAediting_1247981chr17_82389575_-1.66039700649939e-070.430692232429804....
PRADCAediting_1247981chr17_82389575_-3.53094292343237e-050.445038223977781....
THCACAediting_1247981chr17_82389575_-0.03366456417112950.19656049478193....
KIRCCAediting_1247981chr17_82389575_-0.001182571350154610.316705130640142....
UCECCAediting_1247981chr17_82389575_-3.91568499991653e-050.453334472876797....
OVCAediting_1247981chr17_82389575_-0.005059966781106120.341150443171224....
PCPGCAediting_1247981chr17_82389575_-0.01008552597478470.220752437292424....
SKCMCAediting_1247981chr17_82389575_-0.04222909760169320.2434983720201....
TGCTCAediting_1247981chr17_82389575_-0.009493064920237380.329581101539708....
LGGCAediting_1247983chr17_82389581_-..8.96586136809944e-210.599113014769491..
BRCACAediting_1247983chr17_82389581_-5.05867914708051e-180.40078587874702....
LIHCCAediting_1247983chr17_82389581_-6.878838270398e-060.405641263424263....
CESCCAediting_1247983chr17_82389581_-0.006083858647793570.353109268238978....
LUADCAediting_1247983chr17_82389581_-2.92855801663896e-090.439064743327391....
LUSCCAediting_1247983chr17_82389581_-0.03039710052198930.243766100478707....
PRADCAediting_1247983chr17_82389581_-0.000197655286838980.2919467635779662.54150405150573e-050.328289588306184..
HNSCCAediting_1247983chr17_82389581_-0.0004111027600003720.459939033086172....
KIRCCAediting_1247983chr17_82389581_-1.63624793457588e-060.316648726611071....
UCECCAediting_1247983chr17_82389581_-0.0007937555601503680.372141295929039....
OVCAediting_1247983chr17_82389581_-0.02572233570201720.23251526945455....
PAADCAediting_1247983chr17_82389581_-0.04410883941027250.280349745492603....
PCPGCAediting_1247983chr17_82389581_-0.01740386167388090.2090920736560533.02765147891165e-050.358475904068352..
SKCMCAediting_1247983chr17_82389581_-..7.83826600716999e-050.393894898129184..
SARCCAediting_1247983chr17_82389581_-..1.52776135817367e-050.530793039432466..
TGCTCAediting_1247983chr17_82389581_-0.003139693618333660.401949769835743....
LGGCAediting_1247986chr17_82389614_-..0.0001167133885078770.425021634962862..
LGGCAediting_1247987chr17_82389618_-..0.01489038780105620.186493074636224..
BRCACAediting_1247987chr17_82389618_-1.1561962751108e-070.276020888569477....
LUADCAediting_1247987chr17_82389618_-6.45120756228046e-070.420205645072028....
LUSCCAediting_1247987chr17_82389618_-0.02221842005321330.299829821614869....
THCACAediting_1247987chr17_82389618_-0.01853871165212180.262752689600178....
KIRCCAediting_1247987chr17_82389618_-0.003384023244785910.278332391758652....
OVCAediting_1247987chr17_82389618_-0.00763141821128970.352928494181184....
PCPGCAediting_1247987chr17_82389618_-9.66024293331641e-050.378159451567654....
SARCCAediting_1247987chr17_82389618_-0.0003183417134722180.488583843715644....
BRCACAediting_1247989chr17_82389665_-0.0358099900042580.291814704560117....
BLCACAediting_1248000chr17_82389777_-0.01454246333873370.240168693880661....
LGGCAediting_1248000chr17_82389777_-0.0001709664452183040.1861610432722483.73836905730029e-060.228073383287475..
BRCACAediting_1248000chr17_82389777_-2.55782545019384e-410.488936840244877....
LIHCCAediting_1248000chr17_82389777_-0.0002532863293344850.339230080881869....
CESCCAediting_1248000chr17_82389777_-0.007572261832745140.31888443320929....
LUADCAediting_1248000chr17_82389777_-6.42846649795422e-120.441645499830549....
LUSCCAediting_1248000chr17_82389777_-0.007162295725743310.239426017459186....
GBMCAediting_1248000chr17_82389777_-8.54451595681821e-050.417668528518994....
PRADCAediting_1248000chr17_82389777_-4.57763642381579e-210.526293243464028....
HNSCCAediting_1248000chr17_82389777_-6.02312315541266e-050.473136828121575....
THCACAediting_1248000chr17_82389777_-4.14437731409379e-120.342342019146223....
KIRCCAediting_1248000chr17_82389777_-0.02157734131633840.145277267409735....
UCECCAediting_1248000chr17_82389777_-0.0004229097018247540.345935031350483....
KIRPCAediting_1248000chr17_82389777_-0.001603562835795480.297401713787865....
OVCAediting_1248000chr17_82389777_-0.0167139281014560.209562822587917....
PCPGCAediting_1248000chr17_82389777_-2.45939164304578e-050.31837782101826....
SKCMCAediting_1248000chr17_82389777_-4.82677664770659e-060.36818213870357....
SARCCAediting_1248000chr17_82389777_-0.00163694821536460.32386232937009....
TGCTCAediting_1248000chr17_82389777_-2.99648988005579e-050.518966472787551....
THYMCAediting_1248000chr17_82389777_-0.0001533591175563920.496992609266676....
BRCACAediting_1248018chr17_82389958_-0.02915666218931330.242512320426258....
LGGCAediting_1248021chr17_82389974_-..0.0003887595380499480.338363369540143..
BRCACAediting_1248021chr17_82389974_-6.13551575039667e-130.468038717790397....
LUADCAediting_1248021chr17_82389974_-0.04630785826352060.28315829841845....
THCACAediting_1248021chr17_82389974_-0.003160907255039220.307840337353188....

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Relation with cancer stages for OGFOD3

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_1248000chr17_82389777_-0.04714230716032630.196079731898507
BRCApathologic_stageCAediting_1247981chr17_82389575_-0.0006174797330713910.17531702001087
BRCApathologic_stageCAediting_1247983chr17_82389581_-0.001553204255688920.153228193677954
BRCApathologic_stageCAediting_1248000chr17_82389777_-0.0009906826080884510.128778785969026
KIRPpathologic_stageCAediting_1248000chr17_82389777_-0.04129446134054780.207615695555802
LUADpathologic_stageCAediting_1247981chr17_82389575_-0.0295802840511690.188736775046325
SKCMpathologic_stageCAediting_1247987chr17_82389618_-0.006671621460520140.361630925991978
THCApathologic_stageCAediting_1247983chr17_82389581_-0.000889801522608640.332098246074802
THCApathologic_stageCAediting_1248000chr17_82389777_-0.00287822888981730.152103465329768

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Relation with survival for OGFOD3

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
SKCMCAediting_1247987chr17_82389618_-0.01961581818123580.0278025124004

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RelatedDrugs for OGFOD3

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for OGFOD3

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource