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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: HMBOX1 (CAeditome ID:79618)

Gene summary for HMBOX1

check button Gene summary
Gene informationGene symbol

HMBOX1

Gene ID

79618

Gene namehomeobox containing 1
SynonymsHNF1LA|HOT1|PBHNF|TAH1
Cytomap

8p21.1-p12

Type of geneprotein-coding
Descriptionhomeobox-containing protein 1homeobox telomere-binding protein 1homeobox-containing protein PBHNFtelomere-associated homeobox-containing protein 1
Modification date20210518
UniProtAcc

Q6NT76

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
HMBOX1

GO:0003691

Homeobox-containing protein 1

23685356

HMBOX1

GO:0042162

Homeobox-containing protein 1

23685356

HMBOX1

GO:0043565

Homeobox-containing protein 1

23332764

HMBOX1

GO:0043565

Homeobox-containing protein 1

28473536

HMBOX1

GO:1990837

Homeobox-containing protein 1

28473536

HMBOX1

GO:1990837

Homeobox-containing protein 1

28473536

HMBOX1

GO:0000122

Homeobox-containing protein 1

21839858

HMBOX1

GO:0032212

Homeobox-containing protein 1

23685356

HMBOX1

GO:0045892

Homeobox-containing protein 1

19757162

HMBOX1

GO:0051972

Homeobox-containing protein 1

23685356

HMBOX1

GO:0051973

Homeobox-containing protein 1

23685356

HMBOX1

GO:0000781

Homeobox-containing protein 1

23685356

HMBOX1

GO:0005634

Homeobox-containing protein 1

19757162

HMBOX1

GO:0005654

Homeobox-containing protein 1

0000052

HMBOX1

GO:0005737

Homeobox-containing protein 1

19757162

HMBOX1

GO:0005813

Homeobox-containing protein 1

0000052

HMBOX1

GO:0005829

Homeobox-containing protein 1

0000052

HMBOX1

GO:0016604

Homeobox-containing protein 1

0000052


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RNA A-to-I events for HMBOX1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000147421.16
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_626270(28897065, +), CAediting_626271(28897422, +), CAediting_626272(28897473, +), CAediting_626273(28897658, +), CAediting_626274(28899996, +), CAediting_626275(28900065, +), CAediting_626276(28900093, +), CAediting_626277(28900128, +), CAediting_626278(28900129, +), CAediting_626279(28907907, +), CAediting_626280(28907944, +), CAediting_626281(28907958, +), CAediting_626282(28907963, +), CAediting_626283(28908115, +), CAediting_626284(28908127, +), CAediting_626285(28908856, +), CAediting_626286(28908861, +), CAediting_626287(28908916, +), CAediting_626288(28908979, +), CAediting_626289(28908993, +), CAediting_626290(28909052, +), CAediting_626291(28909058, +), CAediting_626292(28909066, +), CAediting_626293(28911392, +), CAediting_626294(28915303, +), CAediting_626295(28916920, +), CAediting_626296(28916930, +), CAediting_626297(28916946, +), CAediting_626298(28916960, +), CAediting_626299(28917006, +), CAediting_626300(28917054, +), CAediting_626301(28918321, +), CAediting_626302(28918410, +), CAediting_626303(28919232, +), CAediting_626304(28924682, +), CAediting_626305(28924742, +), CAediting_626306(28926155, +), CAediting_626307(28926181, +), CAediting_626308(28926668, +), CAediting_626309(28926693, +), CAediting_626310(28926697, +), CAediting_626311(28927926, +), CAediting_626312(28927959, +), CAediting_626313(28927974, +), CAediting_626314(28927988, +), CAediting_626315(28928014, +), CAediting_626316(28928020, +), CAediting_626317(28928024, +), CAediting_626318(28928056, +), CAediting_626319(28931635, +), CAediting_626320(28931667, +), CAediting_626321(28931668, +), CAediting_626322(28938576, +), CAediting_626323(28938580, +), CAediting_626324(28938586, +), CAediting_626325(28939128, +), CAediting_626326(28939139, +), CAediting_626327(28939142, +), CAediting_626328(28939168, +), CAediting_626329(28939169, +), CAediting_626330(28939174, +), CAediting_626331(28939651, +), CAediting_626332(28940095, +), CAediting_626333(28940109, +), CAediting_626334(28940137, +), CAediting_626335(28940141, +), CAediting_626336(28951245, +), CAediting_626337(28951274, +), CAediting_626338(28951383, +), CAediting_626339(28951392, +), CAediting_626340(28951891, +), CAediting_626341(28951913, +), CAediting_626342(28951926, +), CAediting_626343(28951927, +), CAediting_626344(28951934, +), CAediting_626345(28951939, +), CAediting_626346(28951952, +), CAediting_626347(28951962, +), CAediting_626348(28951986, +), CAediting_626349(28951988, +), CAediting_626350(28951990, +), CAediting_626351(28952008, +), CAediting_626352(28952029, +), CAediting_626353(28952040, +), CAediting_626354(28952055, +), CAediting_626355(28952071, +), CAediting_626356(28952072, +), CAediting_626357(28952096, +), CAediting_626358(28952104, +), CAediting_626359(28952146, +), CAediting_626360(28952334, +), CAediting_626361(28952351, +), CAediting_626362(28952363, +), CAediting_626363(28952418, +), CAediting_626364(28952419, +), CAediting_626365(28952424, +), CAediting_626366(28952439, +), CAediting_626367(28952443, +), CAediting_626368(28952508, +), CAediting_626369(28955727, +), CAediting_626370(28955777, +), CAediting_626371(28955788, +), CAediting_626372(28955795, +), CAediting_626373(28955797, +), CAediting_626374(28955802, +), CAediting_626375(28955832, +), CAediting_626376(28955845, +), CAediting_626377(28955859, +), CAediting_626378(28955874, +), CAediting_626379(28978676, +), CAediting_626380(28990719, +), CAediting_626381(28992654, +), CAediting_626382(28992659, +), CAediting_626383(28992662, +), CAediting_626384(28992667, +), CAediting_626385(28992683, +), CAediting_626386(28992685, +), CAediting_626387(28992687, +), CAediting_626388(28992698, +), CAediting_626389(28992704, +), CAediting_626390(28992707, +), CAediting_626391(28992708, +), CAediting_626392(28992709, +), CAediting_626393(28992710, +), CAediting_626394(28992713, +), CAediting_626395(28992716, +), CAediting_626396(28992717, +), CAediting_626397(28992723, +), CAediting_626398(28992733, +), CAediting_626399(28992749, +), CAediting_626400(28992750, +), CAediting_626401(28992755, +), CAediting_626402(28992759, +), CAediting_626403(28992763, +), CAediting_626404(29020941, +), CAediting_626405(29020942, +), CAediting_626406(29020949, +), CAediting_626407(29020966, +), CAediting_626408(29020989, +), CAediting_626409(29020993, +), CAediting_626410(29020999, +), CAediting_626411(29021082, +), CAediting_626412(29022207, +), CAediting_626413(29022226, +), CAediting_626414(29022235, +), CAediting_626415(29022324, +), CAediting_626416(29022353, +), CAediting_626417(29022359, +), CAediting_626418(29023446, +), CAediting_626419(29023472, +), CAediting_626420(29023585, +), CAediting_626421(29023654, +), CAediting_626422(29046817, +), CAediting_626423(29063918, +),

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RNA editing positional annotations for HMBOX1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_626270chr8_28897065_+ncRNA_intronic
CAediting_626271chr8_28897422_+ncRNA_intronic
CAediting_626272chr8_28897473_+ncRNA_intronic
CAediting_626273chr8_28897658_+ncRNA_intronic
CAediting_626274chr8_28899996_+ncRNA_intronic
CAediting_626275chr8_28900065_+ncRNA_intronic
CAediting_626276chr8_28900093_+ncRNA_intronic
CAediting_626277chr8_28900128_+ncRNA_intronic
CAediting_626278chr8_28900129_+ncRNA_intronic
CAediting_626279chr8_28907907_+ncRNA_intronic
CAediting_626280chr8_28907944_+ncRNA_intronic
CAediting_626281chr8_28907958_+ncRNA_intronic
CAediting_626282chr8_28907963_+ncRNA_intronic
CAediting_626283chr8_28908115_+ncRNA_intronic
CAediting_626284chr8_28908127_+ncRNA_intronic
CAediting_626285chr8_28908856_+ncRNA_intronic
CAediting_626286chr8_28908861_+ncRNA_intronic
CAediting_626287chr8_28908916_+ncRNA_intronic
CAediting_626288chr8_28908979_+ncRNA_intronic
CAediting_626289chr8_28908993_+ncRNA_intronic
CAediting_626290chr8_28909052_+ncRNA_intronic
CAediting_626291chr8_28909058_+ncRNA_intronic
CAediting_626292chr8_28909066_+ncRNA_intronic
CAediting_626293chr8_28911392_+ncRNA_intronic
CAediting_626294chr8_28915303_+ncRNA_intronic
CAediting_626295chr8_28916920_+ncRNA_intronic
CAediting_626296chr8_28916930_+ncRNA_intronic
CAediting_626297chr8_28916946_+ncRNA_intronic
CAediting_626298chr8_28916960_+ncRNA_intronic
CAediting_626299chr8_28917006_+ncRNA_intronic
CAediting_626300chr8_28917054_+ncRNA_intronic
CAediting_626301chr8_28918321_+ncRNA_intronic
CAediting_626302chr8_28918410_+ncRNA_intronic
CAediting_626303chr8_28919232_+ncRNA_intronic
CAediting_626304chr8_28924682_+ncRNA_intronic
CAediting_626305chr8_28924742_+ncRNA_intronic
CAediting_626306chr8_28926155_+ncRNA_intronic
CAediting_626307chr8_28926181_+ncRNA_intronic
CAediting_626308chr8_28926668_+ncRNA_intronic
CAediting_626309chr8_28926693_+ncRNA_intronic
CAediting_626310chr8_28926697_+ncRNA_intronic
CAediting_626311chr8_28927926_+ncRNA_intronic
CAediting_626312chr8_28927959_+ncRNA_intronic
CAediting_626313chr8_28927974_+ncRNA_intronic
CAediting_626314chr8_28927988_+ncRNA_intronic
CAediting_626315chr8_28928014_+ncRNA_intronic
CAediting_626316chr8_28928020_+ncRNA_intronic
CAediting_626317chr8_28928024_+ncRNA_intronic
CAediting_626318chr8_28928056_+ncRNA_intronic
CAediting_626319chr8_28931635_+ncRNA_intronic
CAediting_626320chr8_28931667_+ncRNA_intronic
CAediting_626321chr8_28931668_+ncRNA_intronic
CAediting_626322chr8_28938576_+ncRNA_intronic
CAediting_626323chr8_28938580_+ncRNA_intronic
CAediting_626324chr8_28938586_+ncRNA_intronic
CAediting_626325chr8_28939128_+ncRNA_intronic
CAediting_626326chr8_28939139_+ncRNA_intronic
CAediting_626327chr8_28939142_+ncRNA_intronic
CAediting_626328chr8_28939168_+ncRNA_intronic
CAediting_626329chr8_28939169_+ncRNA_intronic
CAediting_626330chr8_28939174_+ncRNA_intronic
CAediting_626331chr8_28939651_+ncRNA_intronic
CAediting_626332chr8_28940095_+ncRNA_intronic
CAediting_626333chr8_28940109_+ncRNA_intronic
CAediting_626334chr8_28940137_+ncRNA_intronic
CAediting_626335chr8_28940141_+ncRNA_intronic
CAediting_626336chr8_28951245_+ncRNA_intronic
CAediting_626337chr8_28951274_+ncRNA_intronic
CAediting_626338chr8_28951383_+ncRNA_intronic
CAediting_626339chr8_28951392_+ncRNA_intronic
CAediting_626340chr8_28951891_+ncRNA_intronic
CAediting_626341chr8_28951913_+ncRNA_intronic
CAediting_626342chr8_28951926_+ncRNA_intronic
CAediting_626343chr8_28951927_+ncRNA_intronic
CAediting_626344chr8_28951934_+ncRNA_intronic
CAediting_626345chr8_28951939_+ncRNA_intronic
CAediting_626346chr8_28951952_+ncRNA_intronic
CAediting_626347chr8_28951962_+ncRNA_intronic
CAediting_626348chr8_28951986_+ncRNA_intronic
CAediting_626349chr8_28951988_+ncRNA_intronic
CAediting_626350chr8_28951990_+ncRNA_intronic
CAediting_626351chr8_28952008_+ncRNA_intronic
CAediting_626352chr8_28952029_+ncRNA_intronic
CAediting_626353chr8_28952040_+ncRNA_intronic
CAediting_626354chr8_28952055_+ncRNA_intronic
CAediting_626355chr8_28952071_+ncRNA_intronic
CAediting_626356chr8_28952072_+ncRNA_intronic
CAediting_626357chr8_28952096_+ncRNA_intronic
CAediting_626358chr8_28952104_+ncRNA_intronic
CAediting_626359chr8_28952146_+ncRNA_intronic
CAediting_626360chr8_28952334_+ncRNA_intronic
CAediting_626361chr8_28952351_+ncRNA_intronic
CAediting_626362chr8_28952363_+ncRNA_intronic
CAediting_626363chr8_28952418_+ncRNA_intronic
CAediting_626364chr8_28952419_+ncRNA_intronic
CAediting_626365chr8_28952424_+ncRNA_intronic
CAediting_626366chr8_28952439_+ncRNA_intronic
CAediting_626367chr8_28952443_+ncRNA_intronic
CAediting_626368chr8_28952508_+ncRNA_intronic
CAediting_626369chr8_28955727_+ncRNA_intronic
CAediting_626370chr8_28955777_+ncRNA_intronic
CAediting_626371chr8_28955788_+ncRNA_intronic
CAediting_626372chr8_28955795_+ncRNA_intronic
CAediting_626373chr8_28955797_+ncRNA_intronic
CAediting_626374chr8_28955802_+ncRNA_intronic
CAediting_626375chr8_28955832_+ncRNA_intronic
CAediting_626376chr8_28955845_+ncRNA_intronic
CAediting_626377chr8_28955859_+ncRNA_exonic
CAediting_626378chr8_28955874_+ncRNA_exonic
CAediting_626379chr8_28978676_+ncRNA_intronic
CAediting_626380chr8_28990719_+ncRNA_intronic
CAediting_626381chr8_28992654_+ncRNA_intronic
CAediting_626382chr8_28992659_+ncRNA_intronic
CAediting_626383chr8_28992662_+ncRNA_intronic
CAediting_626384chr8_28992667_+ncRNA_intronic
CAediting_626385chr8_28992683_+ncRNA_intronic
CAediting_626386chr8_28992685_+ncRNA_intronic
CAediting_626387chr8_28992687_+ncRNA_intronic
CAediting_626388chr8_28992698_+ncRNA_intronic
CAediting_626389chr8_28992704_+ncRNA_intronic
CAediting_626390chr8_28992707_+ncRNA_intronic
CAediting_626391chr8_28992708_+ncRNA_intronic
CAediting_626392chr8_28992709_+ncRNA_intronic
CAediting_626393chr8_28992710_+ncRNA_intronic
CAediting_626394chr8_28992713_+ncRNA_intronic
CAediting_626395chr8_28992716_+ncRNA_intronic
CAediting_626396chr8_28992717_+ncRNA_intronic
CAediting_626397chr8_28992723_+ncRNA_intronic
CAediting_626398chr8_28992733_+ncRNA_intronic
CAediting_626399chr8_28992749_+ncRNA_intronic
CAediting_626400chr8_28992750_+ncRNA_intronic
CAediting_626401chr8_28992755_+ncRNA_intronic
CAediting_626402chr8_28992759_+ncRNA_intronic
CAediting_626403chr8_28992763_+ncRNA_intronic
CAediting_626404chr8_29020941_+intronic
CAediting_626405chr8_29020942_+intronic
CAediting_626406chr8_29020949_+intronic
CAediting_626407chr8_29020966_+intronic
CAediting_626408chr8_29020989_+intronic
CAediting_626409chr8_29020993_+intronic
CAediting_626410chr8_29020999_+intronic
CAediting_626411chr8_29021082_+intronic
CAediting_626412chr8_29022207_+intronic
CAediting_626413chr8_29022226_+intronic
CAediting_626414chr8_29022235_+intronic
CAediting_626415chr8_29022324_+intronic
CAediting_626416chr8_29022353_+intronic
CAediting_626417chr8_29022359_+intronic
CAediting_626418chr8_29023446_+intronic
CAediting_626419chr8_29023472_+intronic
CAediting_626420chr8_29023585_+intronic
CAediting_626421chr8_29023654_+intronic
CAediting_626422chr8_29046817_+ncRNA_intronic
CAediting_626423chr8_29063918_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_626270chr8_28897065_+SINEAluAluSp
CAediting_626271chr8_28897422_+SINEAluAluSg
CAediting_626272chr8_28897473_+SINEAluAluSg
CAediting_626273chr8_28897658_+SINEAluAluSg
CAediting_626274chr8_28899996_+SINEAluAluSx3
CAediting_626275chr8_28900065_+SINEAluAluSx3
CAediting_626276chr8_28900093_+SINEAluAluSx3
CAediting_626277chr8_28900128_+SINEAluAluSx3
CAediting_626278chr8_28900129_+SINEAluAluSx3
CAediting_626279chr8_28907907_+SINEAluAluJb
CAediting_626280chr8_28907944_+SINEAluAluJb
CAediting_626281chr8_28907958_+SINEAluAluJb
CAediting_626282chr8_28907963_+SINEAluAluJb
CAediting_626283chr8_28908115_+SINEAluAluJb
CAediting_626284chr8_28908127_+SINEAluAluJb
CAediting_626285chr8_28908856_+SINEAluAluJr
CAediting_626286chr8_28908861_+SINEAluAluJr
CAediting_626287chr8_28908916_+SINEAluAluJr
CAediting_626288chr8_28908979_+SINEAluAluJr
CAediting_626289chr8_28908993_+SINEAluAluJr
CAediting_626290chr8_28909052_+SINEAluAluJr
CAediting_626291chr8_28909058_+SINEAluAluJr
CAediting_626292chr8_28909066_+SINEAluAluJr
CAediting_626293chr8_28911392_+SINEAluAluSx1
CAediting_626294chr8_28915303_+SINEAluAluY
CAediting_626295chr8_28916920_+SINEAluAluJr
CAediting_626296chr8_28916930_+SINEAluAluJr
CAediting_626297chr8_28916946_+SINEAluAluJr
CAediting_626298chr8_28916960_+SINEAluAluJr
CAediting_626299chr8_28917006_+SINEAluAluJr
CAediting_626300chr8_28917054_+SINEAluAluJr
CAediting_626301chr8_28918321_+SINEAluAluSc8
CAediting_626302chr8_28918410_+SINEAluAluSc8
CAediting_626303chr8_28919232_+DNATcMar-TiggerMER2B
CAediting_626304chr8_28924682_+SINEAluAluSp
CAediting_626305chr8_28924742_+SINEAluAluSp
CAediting_626306chr8_28926155_+SINEAluAluJo
CAediting_626307chr8_28926181_+SINEAluAluJo
CAediting_626308chr8_28926668_+SINEAluAluJr4
CAediting_626309chr8_28926693_+SINEAluAluJr4
CAediting_626310chr8_28926697_+SINEAluAluJr4
CAediting_626311chr8_28927926_+SINEAluAluSc
CAediting_626312chr8_28927959_+SINEAluAluSc
CAediting_626313chr8_28927974_+SINEAluAluSc
CAediting_626314chr8_28927988_+SINEAluAluSc
CAediting_626315chr8_28928014_+SINEAluAluSc
CAediting_626316chr8_28928020_+SINEAluAluSc
CAediting_626317chr8_28928024_+SINEAluAluSc
CAediting_626318chr8_28928056_+SINEAluAluSc
CAediting_626319chr8_28931635_+SINEAluAluJb
CAediting_626320chr8_28931667_+SINEAluAluJb
CAediting_626321chr8_28931668_+SINEAluAluJb
CAediting_626322chr8_28938576_+SINEAluAluJr
CAediting_626323chr8_28938580_+SINEAluAluJr
CAediting_626324chr8_28938586_+SINEAluAluJr
CAediting_626325chr8_28939128_+SINEAluAluSp
CAediting_626326chr8_28939139_+SINEAluAluSp
CAediting_626327chr8_28939142_+SINEAluAluSp
CAediting_626328chr8_28939168_+SINEAluAluSp
CAediting_626329chr8_28939169_+SINEAluAluSp
CAediting_626330chr8_28939174_+SINEAluAluSp
CAediting_626331chr8_28939651_+SINEAluAluSq2
CAediting_626332chr8_28940095_+SINEAluAluSp
CAediting_626333chr8_28940109_+SINEAluAluSp
CAediting_626334chr8_28940137_+SINEAluAluSp
CAediting_626335chr8_28940141_+SINEAluAluSp
CAediting_626336chr8_28951245_+SINEAluAluSc
CAediting_626337chr8_28951274_+SINEAluAluSc
CAediting_626338chr8_28951383_+SINEAluAluSc
CAediting_626339chr8_28951392_+SINEAluAluSc
CAediting_626340chr8_28951891_+SINEAluAluJr
CAediting_626341chr8_28951913_+SINEAluAluJr
CAediting_626342chr8_28951926_+SINEAluAluJr
CAediting_626343chr8_28951927_+SINEAluAluJr
CAediting_626344chr8_28951934_+SINEAluAluJr
CAediting_626345chr8_28951939_+SINEAluAluJr
CAediting_626346chr8_28951952_+SINEAluAluJr
CAediting_626347chr8_28951962_+SINEAluAluJr
CAediting_626348chr8_28951986_+SINEAluAluJr
CAediting_626349chr8_28951988_+SINEAluAluJr
CAediting_626350chr8_28951990_+SINEAluAluJr
CAediting_626351chr8_28952008_+SINEAluAluJr
CAediting_626352chr8_28952029_+SINEAluAluJr
CAediting_626353chr8_28952040_+SINEAluAluJr
CAediting_626354chr8_28952055_+SINEAluAluJr
CAediting_626355chr8_28952071_+SINEAluAluJr
CAediting_626356chr8_28952072_+SINEAluAluJr
CAediting_626357chr8_28952096_+SINEAluAluJr
CAediting_626358chr8_28952104_+SINEAluAluJr
CAediting_626359chr8_28952146_+SINEAluAluJr
CAediting_626360chr8_28952334_+SINEAluAluSx1
CAediting_626361chr8_28952351_+SINEAluAluSx1
CAediting_626362chr8_28952363_+SINEAluAluSx1
CAediting_626363chr8_28952418_+SINEAluAluSx1
CAediting_626364chr8_28952419_+SINEAluAluSx1
CAediting_626365chr8_28952424_+SINEAluAluSx1
CAediting_626366chr8_28952439_+SINEAluAluSx1
CAediting_626367chr8_28952443_+SINEAluAluSx1
CAediting_626368chr8_28952508_+SINEAluAluSx1
CAediting_626369chr8_28955727_+SINEAluAluSx1
CAediting_626370chr8_28955777_+SINEAluAluSx1
CAediting_626371chr8_28955788_+SINEAluAluSx1
CAediting_626372chr8_28955795_+SINEAluAluSx1
CAediting_626373chr8_28955797_+SINEAluAluSx1
CAediting_626374chr8_28955802_+SINEAluAluSx1
CAediting_626375chr8_28955832_+SINEAluAluSx1
CAediting_626376chr8_28955845_+SINEAluAluSx1
CAediting_626377chr8_28955859_+SINEAluAluSx1
CAediting_626378chr8_28955874_+SINEAluAluSx1
CAediting_626379chr8_28978676_+SINEAluAluSz
CAediting_626380chr8_28990719_+SINEAluAluSx1
CAediting_626381chr8_28992654_+SINEAluAluSx3
CAediting_626382chr8_28992659_+SINEAluAluSx3
CAediting_626383chr8_28992662_+SINEAluAluSx3
CAediting_626384chr8_28992667_+SINEAluAluSx3
CAediting_626385chr8_28992683_+SINEAluAluSx3
CAediting_626386chr8_28992685_+SINEAluAluSx3
CAediting_626387chr8_28992687_+SINEAluAluSx3
CAediting_626388chr8_28992698_+SINEAluAluSx3
CAediting_626389chr8_28992704_+SINEAluAluSx3
CAediting_626390chr8_28992707_+SINEAluAluSx3
CAediting_626391chr8_28992708_+SINEAluAluSx3
CAediting_626392chr8_28992709_+SINEAluAluSx3
CAediting_626393chr8_28992710_+SINEAluAluSx3
CAediting_626394chr8_28992713_+SINEAluAluSx3
CAediting_626395chr8_28992716_+SINEAluAluSx3
CAediting_626396chr8_28992717_+SINEAluAluSx3
CAediting_626397chr8_28992723_+SINEAluAluSx3
CAediting_626398chr8_28992733_+SINEAluAluSx3
CAediting_626399chr8_28992749_+SINEAluAluSx3
CAediting_626400chr8_28992750_+SINEAluAluSx3
CAediting_626401chr8_28992755_+SINEAluAluSx3
CAediting_626402chr8_28992759_+SINEAluAluSx3
CAediting_626403chr8_28992763_+SINEAluAluSx3
CAediting_626404chr8_29020941_+SINEAluAluJr4
CAediting_626405chr8_29020942_+SINEAluAluJr4
CAediting_626406chr8_29020949_+SINEAluAluJr4
CAediting_626407chr8_29020966_+SINEAluAluJr4
CAediting_626408chr8_29020989_+SINEAluAluJr4
CAediting_626409chr8_29020993_+SINEAluAluJr4
CAediting_626410chr8_29020999_+SINEAluAluJr4
CAediting_626411chr8_29021082_+SINEAluAluJr4
CAediting_626412chr8_29022207_+SINEAluAluJo
CAediting_626413chr8_29022226_+SINEAluAluJo
CAediting_626414chr8_29022235_+SINEAluAluJo
CAediting_626415chr8_29022324_+SINEAluAluJo
CAediting_626416chr8_29022353_+SINEAluAluJo
CAediting_626417chr8_29022359_+SINEAluAluJo
CAediting_626418chr8_29023446_+SINEAluAluJr
CAediting_626419chr8_29023472_+SINEAluAluJr
CAediting_626420chr8_29023585_+SINEAluAluJr
CAediting_626421chr8_29023654_+SINEAluAluJr
CAediting_626422chr8_29046817_+SINEAluAluJo

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RNA A-to-I editing events in the alternative splicing sites for HMBOX1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000147421.16.HMBOX1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000147421.16.HMBOX1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HMBOX1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for HMBOX1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for HMBOX1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000147421.16ENST00000397358hsa-miR-605-3p29051306290513138mer-1a2905129229051313171-25.59
CAediting_748296chr10_51299626_+ENSG00000147421.16ENST00000521516hsa-miR-605-3p29051306290513138mer-1a2905129229051313171-25.59
CAediting_748296chr10_51299626_+ENSG00000147421.16ENST00000524238hsa-miR-605-3p29051306290513138mer-1a2905129229051313171-25.59
CAediting_1054808chr15_66496985_-ENSG00000147421.16ENST00000558662hsa-miR-451229049492290494998mer-1a2904947629049499148-25.55
CAediting_1229413chr17_67471544_+ENSG00000147421.16ENST00000397358hsa-miR-548aa29053052290530587mer-m82905303729053059148-14.21
CAediting_1054808chr15_66496985_-ENSG00000147421.16ENST00000522468hsa-miR-451229064558290645658mer-1a2906454429064565140-21.49
CAediting_1368054chr19_46709310_-ENSG00000147421.16ENST00000522468hsa-miR-320e29064276290642838mer-1a2906426629064283151-19.85
CAediting_86358chr1_109598906_+ENSG00000147421.16ENST00000522468hsa-miR-197-5p29064563290645697mer-1a2906456329064585144-34.04
CAediting_468389chr6_31355314_-ENSG00000147421.16ENST00000522468hsa-miR-6891-5p29064616290646227mer-m82906460529064623140-15.14

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000147421.16ENST00000397358hsa-miR-200b-3p29051333290513408mer-1a2905131729051340148-13.08
CAediting_604450chr7_133034877_-ENSG00000147421.16ENST00000397358hsa-miR-365429051975290519817mer-m82905196329051982143-13.78
CAediting_117844chr1_162342605_+ENSG00000147421.16ENST00000397358hsa-miR-556-3p29052420290524267mer-m82905240529052427150-13.55
CAediting_524911chr7_5495852_-ENSG00000147421.16ENST00000397358hsa-miR-589-3p29051285290512917mer-m82905126529051292151-18.2
CAediting_980496chr14_31014685_-ENSG00000147421.16ENST00000397358hsa-miR-624-3p29052825290528306mer2905281229052831141-9.55
CAediting_393chr1_1167164_+ENSG00000147421.16ENST00000521516hsa-miR-200b-3p29051333290513408mer-1a2905131729051340148-13.08
CAediting_393chr1_1167164_+ENSG00000147421.16ENST00000524238hsa-miR-200b-3p29051333290513408mer-1a2905131729051340148-13.08

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HMBOX1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000519662.4protein_codingSoverviewSoverview
ENST00000522468.1nonsense_mediated_decaySoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_626304ENST00000519662.4chr8_28924682_+-276.30-276.30-275.80
CAediting_626305ENST00000519662.4chr8_28924742_+-275.80-276.30-275.80
CAediting_626423ENST00000522468.1chr8_29063918_+-283.20-279.50-283.20

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Relation with ADAR for HMBOX1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BLCACAediting_626423chr8_29063918_+0.03851695954948180.293586955839173....
LGGCAediting_626423chr8_29063918_+2.66387033043638e-060.486784359565697....
LUADCAediting_626423chr8_29063918_+0.02194172534666040.266075630146454....
LUSCCAediting_626423chr8_29063918_+0.02452476712958160.292590739397593....
KIRCCAediting_626423chr8_29063918_+0.00141726582429250.278104526803232....

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Relation with cancer stages for HMBOX1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
KIRCpathologic_stageCAediting_626423chr8_29063918_+0.03905750132999130.181939700537266
STADpathologic_stageCAediting_626361chr8_28952351_+0.0207637279872355-0.329542876796287

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Relation with survival for HMBOX1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for HMBOX1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for HMBOX1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource