CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ZSCAN5A (CAeditome ID:79149)

Gene summary for ZSCAN5A

check button Gene summary
Gene informationGene symbol

ZSCAN5A

Gene ID

79149

Gene namezinc finger and SCAN domain containing 5A
SynonymsZNF495|ZSCAN5
Cytomap

19q13.43

Type of geneprotein-coding
Descriptionzinc finger and SCAN domain-containing protein 5Azinc finger and SCAN domain containing 5zinc finger protein 495
Modification date20210518
UniProtAcc

Q9BUG6

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ZSCAN5A

GO:1990837

Zinc finger and SCAN domain-containing protein 5A

28473536


Top

RNA A-to-I events for ZSCAN5A

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000131848.8

check button RNA A-to-I editing events in Cancer.
CAediting_1391867(56221942, -), CAediting_1391868(56222136, -), CAediting_1391869(56222139, -), CAediting_1391870(56222147, -), CAediting_1391871(56222171, -), CAediting_1391872(56222173, -), CAediting_1391873(56222202, -), CAediting_1391874(56222257, -), CAediting_1391875(56222270, -), CAediting_1391876(56222286, -), CAediting_1391877(56222287, -), CAediting_1391878(56222677, -), CAediting_1391879(56222684, -), CAediting_1391880(56222692, -), CAediting_1391881(56223707, -), CAediting_1391882(56223742, -), CAediting_1391883(56223772, -), CAediting_1391884(56223773, -), CAediting_1391885(56225037, -), CAediting_1391886(56225038, -), CAediting_1391887(56225104, -), CAediting_1391888(56225128, -), CAediting_1391889(56225138, -), CAediting_1391890(56230983, -), CAediting_1391891(56232085, -), CAediting_1391892(56232184, -), CAediting_1391893(56232195, -), CAediting_1391894(56234008, -), CAediting_1391895(56234044, -), CAediting_1391896(56248333, -), CAediting_1391897(56248376, -), CAediting_1391898(56248442, -), CAediting_1391899(56248455, -), CAediting_1391900(56259350, -), CAediting_1391901(56259753, -), CAediting_1391902(56259825, -), CAediting_1391903(56259826, -), CAediting_1391904(56259830, -), CAediting_1391905(56259845, -), CAediting_1391906(56259850, -), CAediting_1391907(56259852, -), CAediting_1391908(56259862, -), CAediting_1391909(56259874, -), CAediting_1391910(56259889, -), CAediting_1391911(56259922, -), CAediting_1391912(56260352, -), CAediting_1391913(56260353, -), CAediting_1391914(56260393, -), CAediting_1391915(56262099, -), CAediting_1391916(56262107, -), CAediting_1391917(56262142, -), CAediting_1391918(56262146, -), CAediting_1391919(56262198, -), CAediting_1391920(56262490, -), CAediting_1391921(56262507, -), CAediting_1391922(56262514, -), CAediting_1391923(56262518, -), CAediting_1391924(56262586, -), CAediting_1391925(56262594, -), CAediting_1391926(56262721, -), CAediting_1391927(56266608, -), CAediting_1391928(56266618, -), CAediting_1391929(56266684, -), CAediting_1391930(56266708, -), CAediting_1391931(56268844, -), CAediting_1391932(56268856, -), CAediting_1391933(56268905, -), CAediting_1391934(56268906, -), CAediting_1391935(56268907, -), CAediting_1391936(56268908, -), CAediting_1391937(56268944, -), CAediting_1391938(56268949, -), CAediting_1391939(56268951, -), CAediting_1391940(56268968, -), CAediting_1391941(56268970, -), CAediting_1391942(56268971, -), CAediting_1391943(56268978, -), CAediting_1391944(56268990, -), CAediting_1391945(56268992, -), CAediting_1391946(56269102, -), CAediting_1391947(56269134, -), CAediting_1391948(56269197, -), CAediting_1391949(56269209, -), CAediting_1391950(56269212, -), CAediting_1391951(56269265, -),

Top

RNA editing positional annotations for ZSCAN5A using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_1391871chr19_56222171_-nonsynonymous SNVENST00000391713.4c.A895Gp.R299GDDD
CAediting_1391871chr19_56222171_-nonsynonymous SNVENST00000587340.4c.A895Gp.R299GDDD
CAediting_1391871chr19_56222171_-nonsynonymous SNVENST00000587492.4c.A457Gp.R153GDDD
CAediting_1391871chr19_56222171_-nonsynonymous SNVENST00000592355.4c.A892Gp.R298GDDD
CAediting_1391871chr19_56222171_-nonsynonymous SNVENST00000593106.4c.A457Gp.R153GDDD
CAediting_1391874chr19_56222257_-nonsynonymous SNVENST00000391713.4c.A809Gp.D270GDDN
CAediting_1391874chr19_56222257_-nonsynonymous SNVENST00000587340.4c.A809Gp.D270GDDN
CAediting_1391874chr19_56222257_-nonsynonymous SNVENST00000587492.4c.A371Gp.D124GDDN
CAediting_1391874chr19_56222257_-nonsynonymous SNVENST00000592355.4c.A806Gp.D269GDDN
CAediting_1391874chr19_56222257_-nonsynonymous SNVENST00000593106.4c.A371Gp.D124GDDN
CAediting_1391875chr19_56222270_-nonsynonymous SNVENST00000391713.4c.A796Gp.N266DTDN
CAediting_1391875chr19_56222270_-nonsynonymous SNVENST00000587340.4c.A796Gp.N266DTDN
CAediting_1391875chr19_56222270_-nonsynonymous SNVENST00000587492.4c.A358Gp.N120DTDN
CAediting_1391875chr19_56222270_-nonsynonymous SNVENST00000592355.4c.A793Gp.N265DTDN
CAediting_1391875chr19_56222270_-nonsynonymous SNVENST00000593106.4c.A358Gp.N120DTDN
CAediting_1391880chr19_56222692_-nonsynonymous SNVENST00000391713.4c.A638Gp.K213RDBN
CAediting_1391880chr19_56222692_-nonsynonymous SNVENST00000587340.4c.A638Gp.K213RDBN
CAediting_1391880chr19_56222692_-nonsynonymous SNVENST00000587492.4c.A200Gp.K67RDBN
CAediting_1391880chr19_56222692_-nonsynonymous SNVENST00000592355.4c.A638Gp.K213RDBN
CAediting_1391880chr19_56222692_-nonsynonymous SNVENST00000593106.4c.A200Gp.K67RDBN
CAediting_1391884chr19_56223773_-nonsynonymous SNVENST00000391713.4c.A446Gp.E149GTBD
CAediting_1391884chr19_56223773_-nonsynonymous SNVENST00000587340.4c.A446Gp.E149GTBD
CAediting_1391884chr19_56223773_-nonsynonymous SNVENST00000587492.4c.A8Gp.E3GTBD
CAediting_1391884chr19_56223773_-nonsynonymous SNVENST00000592355.4c.A446Gp.E149GTBD
CAediting_1391884chr19_56223773_-nonsynonymous SNVENST00000593106.4c.A8Gp.E3GTBD

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1391867chr19_56221942_-exonic
CAediting_1391868chr19_56222136_-exonic
CAediting_1391869chr19_56222139_-exonic
CAediting_1391870chr19_56222147_-exonic
CAediting_1391871chr19_56222171_-exonic
CAediting_1391872chr19_56222173_-exonic
CAediting_1391873chr19_56222202_-exonic
CAediting_1391874chr19_56222257_-exonic
CAediting_1391875chr19_56222270_-exonic
CAediting_1391876chr19_56222286_-exonic
CAediting_1391877chr19_56222287_-exonic
CAediting_1391878chr19_56222677_-exonic
CAediting_1391879chr19_56222684_-exonic
CAediting_1391880chr19_56222692_-exonic
CAediting_1391881chr19_56223707_-exonic
CAediting_1391882chr19_56223742_-exonic
CAediting_1391883chr19_56223772_-exonic
CAediting_1391884chr19_56223773_-exonic
CAediting_1391885chr19_56225037_-exonic
CAediting_1391886chr19_56225038_-exonic
CAediting_1391887chr19_56225104_-ncRNA_exonic
CAediting_1391888chr19_56225128_-ncRNA_exonic
CAediting_1391889chr19_56225138_-ncRNA_exonic
CAediting_1391890chr19_56230983_-intronic
CAediting_1391891chr19_56232085_-intronic
CAediting_1391892chr19_56232184_-intronic
CAediting_1391893chr19_56232195_-intronic
CAediting_1391894chr19_56234008_-intronic
CAediting_1391895chr19_56234044_-intronic
CAediting_1391896chr19_56248333_-intronic
CAediting_1391897chr19_56248376_-intronic
CAediting_1391898chr19_56248442_-intronic
CAediting_1391899chr19_56248455_-intronic
CAediting_1391900chr19_56259350_-intronic
CAediting_1391901chr19_56259753_-intronic
CAediting_1391902chr19_56259825_-intronic
CAediting_1391903chr19_56259826_-intronic
CAediting_1391904chr19_56259830_-intronic
CAediting_1391905chr19_56259845_-intronic
CAediting_1391906chr19_56259850_-intronic
CAediting_1391907chr19_56259852_-intronic
CAediting_1391908chr19_56259862_-intronic
CAediting_1391909chr19_56259874_-intronic
CAediting_1391910chr19_56259889_-intronic
CAediting_1391911chr19_56259922_-intronic
CAediting_1391912chr19_56260352_-intronic
CAediting_1391913chr19_56260353_-intronic
CAediting_1391914chr19_56260393_-intronic
CAediting_1391915chr19_56262099_-intronic
CAediting_1391916chr19_56262107_-intronic
CAediting_1391917chr19_56262142_-intronic
CAediting_1391918chr19_56262146_-intronic
CAediting_1391919chr19_56262198_-intronic
CAediting_1391920chr19_56262490_-intronic
CAediting_1391921chr19_56262507_-intronic
CAediting_1391922chr19_56262514_-intronic
CAediting_1391923chr19_56262518_-intronic
CAediting_1391924chr19_56262586_-intronic
CAediting_1391925chr19_56262594_-intronic
CAediting_1391926chr19_56262721_-intronic
CAediting_1391927chr19_56266608_-ncRNA_exonic
CAediting_1391928chr19_56266618_-ncRNA_exonic
CAediting_1391929chr19_56266684_-ncRNA_exonic
CAediting_1391930chr19_56266708_-ncRNA_exonic
CAediting_1391931chr19_56268844_-ncRNA_intronic
CAediting_1391932chr19_56268856_-ncRNA_intronic
CAediting_1391933chr19_56268905_-ncRNA_intronic
CAediting_1391934chr19_56268906_-ncRNA_intronic
CAediting_1391935chr19_56268907_-ncRNA_intronic
CAediting_1391936chr19_56268908_-ncRNA_intronic
CAediting_1391937chr19_56268944_-ncRNA_intronic
CAediting_1391938chr19_56268949_-ncRNA_intronic
CAediting_1391939chr19_56268951_-ncRNA_intronic
CAediting_1391940chr19_56268968_-ncRNA_intronic
CAediting_1391941chr19_56268970_-ncRNA_intronic
CAediting_1391942chr19_56268971_-ncRNA_intronic
CAediting_1391943chr19_56268978_-ncRNA_intronic
CAediting_1391944chr19_56268990_-ncRNA_intronic
CAediting_1391945chr19_56268992_-ncRNA_intronic
CAediting_1391946chr19_56269102_-ncRNA_intronic
CAediting_1391947chr19_56269134_-ncRNA_intronic
CAediting_1391948chr19_56269197_-ncRNA_intronic
CAediting_1391949chr19_56269209_-ncRNA_intronic
CAediting_1391950chr19_56269212_-ncRNA_intronic
CAediting_1391951chr19_56269265_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1391890chr19_56230983_-DNATcMar-TiggerTigger5
CAediting_1391891chr19_56232085_-SINEAluAluJb
CAediting_1391892chr19_56232184_-SINEAluAluJb
CAediting_1391893chr19_56232195_-SINEAluAluJb
CAediting_1391894chr19_56234008_-SINEAluAluJr
CAediting_1391895chr19_56234044_-SINEAluAluJr
CAediting_1391896chr19_56248333_-SINEAluAluJb
CAediting_1391897chr19_56248376_-SINEAluAluJb
CAediting_1391898chr19_56248442_-SINEAluAluJb
CAediting_1391899chr19_56248455_-SINEAluAluJb
CAediting_1391900chr19_56259350_-SINEAluFLAM_C
CAediting_1391901chr19_56259753_-SINEAluAluJb
CAediting_1391902chr19_56259825_-SINEAluAluJb
CAediting_1391903chr19_56259826_-SINEAluAluJb
CAediting_1391904chr19_56259830_-SINEAluAluJb
CAediting_1391905chr19_56259845_-SINEAluAluJb
CAediting_1391906chr19_56259850_-SINEAluAluJb
CAediting_1391907chr19_56259852_-SINEAluAluJb
CAediting_1391908chr19_56259862_-SINEAluAluJb
CAediting_1391909chr19_56259874_-SINEAluAluJb
CAediting_1391910chr19_56259889_-SINEAluAluJb
CAediting_1391911chr19_56259922_-SINEAluAluJb
CAediting_1391912chr19_56260352_-SINEAluAluSp
CAediting_1391913chr19_56260353_-SINEAluAluSp
CAediting_1391914chr19_56260393_-SINEAluAluSp
CAediting_1391915chr19_56262099_-SINEAluAluSx1
CAediting_1391916chr19_56262107_-SINEAluAluSx1
CAediting_1391917chr19_56262142_-SINEAluAluSx1
CAediting_1391918chr19_56262146_-SINEAluAluSx1
CAediting_1391919chr19_56262198_-SINEAluAluSx1
CAediting_1391920chr19_56262490_-SINEAluAluSq2
CAediting_1391921chr19_56262507_-SINEAluAluSq2
CAediting_1391922chr19_56262514_-SINEAluAluSq2
CAediting_1391923chr19_56262518_-SINEAluAluSq2
CAediting_1391924chr19_56262586_-SINEAluAluSq2
CAediting_1391925chr19_56262594_-SINEAluAluSq2
CAediting_1391926chr19_56262721_-SINEAluAluSq2
CAediting_1391927chr19_56266608_-SINEAluAluSc8
CAediting_1391928chr19_56266618_-SINEAluAluSc8
CAediting_1391929chr19_56266684_-SINEAluAluSc8
CAediting_1391930chr19_56266708_-SINEAluAluSc8
CAediting_1391931chr19_56268844_-LINEL1L1MB5
CAediting_1391932chr19_56268856_-LINEL1L1MB5
CAediting_1391933chr19_56268905_-LINEL1L1MB5
CAediting_1391934chr19_56268906_-LINEL1L1MB5
CAediting_1391935chr19_56268907_-LINEL1L1MB5
CAediting_1391936chr19_56268908_-LINEL1L1MB5
CAediting_1391937chr19_56268944_-LINEL1L1MB5
CAediting_1391938chr19_56268949_-LINEL1L1MB5
CAediting_1391939chr19_56268951_-LINEL1L1MB5
CAediting_1391940chr19_56268968_-LINEL1L1MB5
CAediting_1391941chr19_56268970_-LINEL1L1MB5
CAediting_1391942chr19_56268971_-LINEL1L1MB5
CAediting_1391943chr19_56268978_-LINEL1L1MB5
CAediting_1391944chr19_56268990_-LINEL1L1MB5
CAediting_1391945chr19_56268992_-LINEL1L1MB5
CAediting_1391946chr19_56269102_-LINEL1L1MB5
CAediting_1391947chr19_56269134_-LINEL1L1MB5
CAediting_1391948chr19_56269197_-LINEL1L1MB5
CAediting_1391949chr19_56269209_-LINEL1L1MB5
CAediting_1391950chr19_56269212_-LINEL1L1MB5
CAediting_1391951chr19_56269265_-LINEL1L1MB5

Top

RNA A-to-I editing events in the alternative splicing sites for ZSCAN5A

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000131848.8.ZSCAN5A.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000131848.8.ZSCAN5A.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZSCAN5A

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for ZSCAN5A

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


Top

The effects of the RNA editing to the miRNA binding sites for ZSCAN5A

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000131848.8ENST00000391713hsa-miR-605-3p56219937562199437mer-m85621993656219959154-15.86
CAediting_688081chr9_63819627_+ENSG00000131848.8ENST00000391713hsa-miR-4477b56220083562200897mer-m85622008256220104154-14.63
CAediting_1229414chr17_67471546_+ENSG00000131848.8ENST00000391713hsa-miR-548aa56220240562202478mer-1a5622024056220266146-17.2
CAediting_1229414chr17_67471546_+ENSG00000131848.8ENST00000391713hsa-miR-548aa56219791562197977mer-m85621979056219812148-17.87
CAediting_1229414chr17_67471546_+ENSG00000131848.8ENST00000391713hsa-miR-548aa56220860562208667mer-m85622085956220883140-12.81
CAediting_524911chr7_5495852_-ENSG00000131848.8ENST00000391713hsa-miR-589-3p56220361562203677mer-m85622036056220382158-18.19

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000131848.8ENST00000391713hsa-miR-195-3p56221305562213117mer-m85622130456221325146-10.21
CAediting_688081chr9_63819627_+ENSG00000131848.8ENST00000391713hsa-miR-4477b56220817562208237mer-m85622081656220837140-7.82
CAediting_748296chr10_51299626_+ENSG00000131848.8ENST00000391713hsa-miR-605-3p56221551562215577mer-m85622155056221572145-16.11
CAediting_468389chr6_31355314_-ENSG00000131848.8ENST00000391713hsa-miR-6891-5p56219956562199638mer-1a5621995656219976148-21.17
CAediting_468389chr6_31355314_-ENSG00000131848.8ENST00000391713hsa-miR-6891-5p56220818562208258mer-1a5622081856220836149-22.87

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for ZSCAN5A

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for ZSCAN5A

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

Top

Relation with cancer stages for ZSCAN5A

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

Top

Relation with survival for ZSCAN5A

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for ZSCAN5A

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for ZSCAN5A

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource