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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TAF1D (CAeditome ID:79101)

Gene summary for TAF1D

check button Gene summary
Gene informationGene symbol

TAF1D

Gene ID

79101

Gene nameTATA-box binding protein associated factor, RNA polymerase I subunit D
SynonymsJOSD3|RAFI41|TAF(I)41|TAFI41
Cytomap

11q21

Type of geneprotein-coding
DescriptionTATA box-binding protein-associated factor RNA polymerase I subunit DJosephin domain containing 3RNA polymerase I-specific TBP-associated factor 41 kDaTATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDaTATA box-binding protein
Modification date20210518
UniProtAcc

Q9H5J8

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TAF1D

GO:0005654

TATA box-binding protein-associated factor RNA polymerase I subunit D

0000052

TAF1D

GO:0005730

TATA box-binding protein-associated factor RNA polymerase I subunit D

0000052

TAF1D

GO:0005829

TATA box-binding protein-associated factor RNA polymerase I subunit D

0000052

TAF1D

GO:0034451

TATA box-binding protein-associated factor RNA polymerase I subunit D

0000052

TAF1D

GO:0072686

TATA box-binding protein-associated factor RNA polymerase I subunit D

0000052


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RNA A-to-I events for TAF1D

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000166012.13
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_846600(93730431, -), CAediting_846601(93730714, -), CAediting_846602(93731801, -), CAediting_846603(93733703, -), CAediting_846604(93733708, -), CAediting_846605(93733730, -), CAediting_846606(93733734, -), CAediting_846607(93733736, -), CAediting_846608(93733755, -), CAediting_846609(93733773, -), CAediting_846610(93733774, -), CAediting_846611(93733779, -), CAediting_846612(93734587, -), CAediting_846613(93734595, -), CAediting_846614(93734803, -), CAediting_846615(93734811, -), CAediting_846616(93734813, -), CAediting_846617(93734814, -), CAediting_846618(93734817, -), CAediting_846619(93734833, -), CAediting_846620(93734836, -), CAediting_846621(93734867, -), CAediting_846622(93734871, -), CAediting_846623(93734884, -), CAediting_846624(93734885, -), CAediting_846625(93734902, -), CAediting_846626(93734912, -), CAediting_846627(93734931, -), CAediting_846628(93734932, -), CAediting_846629(93734933, -), CAediting_846630(93734934, -), CAediting_846631(93734941, -), CAediting_846632(93734942, -), CAediting_846633(93734945, -), CAediting_846634(93734951, -), CAediting_846635(93734955, -), CAediting_846636(93734956, -), CAediting_846637(93734963, -), CAediting_846638(93734964, -), CAediting_846639(93734968, -), CAediting_846640(93734980, -), CAediting_846641(93734982, -), CAediting_846642(93734983, -), CAediting_846643(93734988, -), CAediting_846644(93734991, -), CAediting_846645(93734994, -), CAediting_846646(93734995, -), CAediting_846647(93735004, -), CAediting_846648(93735007, -), CAediting_846649(93735034, -), CAediting_846650(93735035, -), CAediting_846651(93735042, -), CAediting_846652(93735043, -), CAediting_846653(93735049, -), CAediting_846654(93735054, -), CAediting_846655(93735417, -), CAediting_846656(93735437, -), CAediting_846657(93735438, -), CAediting_846658(93735461, -), CAediting_846659(93735466, -), CAediting_846660(93735478, -), CAediting_846661(93735479, -), CAediting_846662(93735491, -), CAediting_846663(93735503, -), CAediting_846664(93735505, -), CAediting_846665(93735523, -), CAediting_846666(93735527, -), CAediting_846667(93735531, -), CAediting_846668(93735540, -), CAediting_846669(93735547, -), CAediting_846670(93735549, -), CAediting_846671(93735552, -), CAediting_846672(93735559, -), CAediting_846673(93735585, -), CAediting_846674(93735586, -), CAediting_846675(93735605, -), CAediting_846676(93735606, -), CAediting_846677(93735611, -), CAediting_846678(93735631, -), CAediting_846679(93735643, -), CAediting_846680(93735647, -), CAediting_846681(93735661, -), CAediting_846682(93735663, -), CAediting_846683(93765382, -), CAediting_846684(93765393, -), CAediting_846685(93765400, -), CAediting_846686(93765409, -), CAediting_846687(93765417, -), CAediting_846688(93765430, -), CAediting_846689(93765468, -), CAediting_846690(93765489, -), CAediting_846691(93765499, -), CAediting_846692(93765505, -), CAediting_846693(93765510, -), CAediting_846694(93765513, -), CAediting_846695(93765536, -), CAediting_846696(93765538, -), CAediting_846697(93765954, -), CAediting_846698(93765963, -), CAediting_846699(93765972, -), CAediting_846700(93765975, -), CAediting_846701(93765999, -), CAediting_846702(93766008, -), CAediting_846703(93766011, -), CAediting_846704(93766012, -), CAediting_846705(93766037, -), CAediting_846706(93766072, -), CAediting_846707(93766084, -), CAediting_846708(93766100, -), CAediting_846709(93766106, -), CAediting_846710(93766109, -), CAediting_846711(93766116, -), CAediting_846712(93766128, -), CAediting_846713(93766153, -), CAediting_846714(93766166, -), CAediting_846715(93766202, -), CAediting_846716(93766214, -), CAediting_846717(93766224, -), CAediting_846718(93767519, -), CAediting_846719(93767527, -), CAediting_846720(93767967, -), CAediting_846721(93767970, -), CAediting_846722(93768010, -), CAediting_846723(93771248, -), CAediting_846724(93771258, -), CAediting_846725(93771297, -), CAediting_846726(93776235, -), CAediting_846727(93780765, -),

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RNA editing positional annotations for TAF1D using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_846600chr11_93730431_-ncRNA_exonic
CAediting_846601chr11_93730714_-ncRNA_exonic;splicing
CAediting_846602chr11_93731801_-ncRNA_exonic;splicing
CAediting_846603chr11_93733703_-ncRNA_exonic
CAediting_846604chr11_93733708_-ncRNA_exonic
CAediting_846605chr11_93733730_-ncRNA_exonic
CAediting_846606chr11_93733734_-ncRNA_exonic
CAediting_846607chr11_93733736_-ncRNA_exonic
CAediting_846608chr11_93733755_-ncRNA_exonic
CAediting_846609chr11_93733773_-ncRNA_exonic
CAediting_846610chr11_93733774_-ncRNA_exonic
CAediting_846611chr11_93733779_-ncRNA_exonic
CAediting_846612chr11_93734587_-ncRNA_exonic
CAediting_846613chr11_93734595_-ncRNA_exonic
CAediting_846614chr11_93734803_-ncRNA_exonic
CAediting_846615chr11_93734811_-ncRNA_exonic
CAediting_846616chr11_93734813_-ncRNA_exonic
CAediting_846617chr11_93734814_-ncRNA_exonic
CAediting_846618chr11_93734817_-ncRNA_exonic
CAediting_846619chr11_93734833_-ncRNA_exonic
CAediting_846620chr11_93734836_-ncRNA_exonic
CAediting_846621chr11_93734867_-ncRNA_exonic
CAediting_846622chr11_93734871_-ncRNA_exonic
CAediting_846623chr11_93734884_-ncRNA_exonic
CAediting_846624chr11_93734885_-ncRNA_exonic
CAediting_846625chr11_93734902_-ncRNA_exonic
CAediting_846626chr11_93734912_-ncRNA_exonic
CAediting_846627chr11_93734931_-ncRNA_exonic
CAediting_846628chr11_93734932_-ncRNA_exonic
CAediting_846629chr11_93734933_-ncRNA_exonic
CAediting_846630chr11_93734934_-ncRNA_exonic
CAediting_846631chr11_93734941_-ncRNA_exonic
CAediting_846632chr11_93734942_-ncRNA_exonic
CAediting_846633chr11_93734945_-ncRNA_exonic
CAediting_846634chr11_93734951_-ncRNA_exonic
CAediting_846635chr11_93734955_-ncRNA_exonic
CAediting_846636chr11_93734956_-ncRNA_exonic
CAediting_846637chr11_93734963_-ncRNA_exonic
CAediting_846638chr11_93734964_-ncRNA_exonic
CAediting_846639chr11_93734968_-ncRNA_exonic
CAediting_846640chr11_93734980_-ncRNA_exonic
CAediting_846641chr11_93734982_-ncRNA_exonic
CAediting_846642chr11_93734983_-ncRNA_exonic
CAediting_846643chr11_93734988_-ncRNA_exonic
CAediting_846644chr11_93734991_-ncRNA_exonic
CAediting_846645chr11_93734994_-ncRNA_exonic
CAediting_846646chr11_93734995_-ncRNA_exonic
CAediting_846647chr11_93735004_-ncRNA_exonic
CAediting_846648chr11_93735007_-ncRNA_exonic
CAediting_846649chr11_93735034_-ncRNA_exonic
CAediting_846650chr11_93735035_-ncRNA_exonic
CAediting_846651chr11_93735042_-ncRNA_exonic
CAediting_846652chr11_93735043_-ncRNA_exonic
CAediting_846653chr11_93735049_-ncRNA_exonic
CAediting_846654chr11_93735054_-ncRNA_exonic
CAediting_846655chr11_93735417_-ncRNA_exonic
CAediting_846656chr11_93735437_-ncRNA_exonic
CAediting_846657chr11_93735438_-ncRNA_exonic
CAediting_846658chr11_93735461_-ncRNA_exonic
CAediting_846659chr11_93735466_-ncRNA_exonic
CAediting_846660chr11_93735478_-ncRNA_exonic
CAediting_846661chr11_93735479_-ncRNA_exonic
CAediting_846662chr11_93735491_-ncRNA_exonic
CAediting_846663chr11_93735503_-ncRNA_exonic
CAediting_846664chr11_93735505_-ncRNA_exonic
CAediting_846665chr11_93735523_-ncRNA_exonic
CAediting_846666chr11_93735527_-ncRNA_exonic
CAediting_846667chr11_93735531_-ncRNA_exonic
CAediting_846668chr11_93735540_-ncRNA_exonic
CAediting_846669chr11_93735547_-ncRNA_exonic
CAediting_846670chr11_93735549_-ncRNA_exonic
CAediting_846671chr11_93735552_-ncRNA_exonic
CAediting_846672chr11_93735559_-ncRNA_exonic
CAediting_846673chr11_93735585_-ncRNA_exonic
CAediting_846674chr11_93735586_-ncRNA_exonic
CAediting_846675chr11_93735605_-ncRNA_exonic
CAediting_846676chr11_93735606_-ncRNA_exonic
CAediting_846677chr11_93735611_-ncRNA_exonic
CAediting_846678chr11_93735631_-ncRNA_exonic
CAediting_846679chr11_93735643_-ncRNA_exonic
CAediting_846680chr11_93735647_-ncRNA_exonic
CAediting_846681chr11_93735661_-ncRNA_exonic
CAediting_846682chr11_93735663_-ncRNA_exonic
CAediting_846683chr11_93765382_-intronic
CAediting_846684chr11_93765393_-intronic
CAediting_846685chr11_93765400_-intronic
CAediting_846686chr11_93765409_-intronic
CAediting_846687chr11_93765417_-intronic
CAediting_846688chr11_93765430_-intronic
CAediting_846689chr11_93765468_-intronic
CAediting_846690chr11_93765489_-intronic
CAediting_846691chr11_93765499_-intronic
CAediting_846692chr11_93765505_-intronic
CAediting_846693chr11_93765510_-intronic
CAediting_846694chr11_93765513_-intronic
CAediting_846695chr11_93765536_-intronic
CAediting_846696chr11_93765538_-intronic
CAediting_846697chr11_93765954_-intronic
CAediting_846698chr11_93765963_-intronic
CAediting_846699chr11_93765972_-intronic
CAediting_846700chr11_93765975_-intronic
CAediting_846701chr11_93765999_-intronic
CAediting_846702chr11_93766008_-intronic
CAediting_846703chr11_93766011_-intronic
CAediting_846704chr11_93766012_-intronic
CAediting_846705chr11_93766037_-intronic
CAediting_846706chr11_93766072_-intronic
CAediting_846707chr11_93766084_-intronic
CAediting_846708chr11_93766100_-intronic
CAediting_846709chr11_93766106_-intronic
CAediting_846710chr11_93766109_-intronic
CAediting_846711chr11_93766116_-intronic
CAediting_846712chr11_93766128_-intronic
CAediting_846713chr11_93766153_-intronic
CAediting_846714chr11_93766166_-intronic
CAediting_846715chr11_93766202_-intronic
CAediting_846716chr11_93766214_-intronic
CAediting_846717chr11_93766224_-intronic
CAediting_846718chr11_93767519_-intronic
CAediting_846719chr11_93767527_-intronic
CAediting_846720chr11_93767967_-intronic
CAediting_846721chr11_93767970_-intronic
CAediting_846722chr11_93768010_-intronic
CAediting_846723chr11_93771248_-intronic
CAediting_846724chr11_93771258_-intronic
CAediting_846725chr11_93771297_-intronic
CAediting_846726chr11_93776235_-intronic
CAediting_846727chr11_93780765_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_846603chr11_93733703_-SINEAluAluJo
CAediting_846604chr11_93733708_-SINEAluAluJo
CAediting_846605chr11_93733730_-SINEAluAluJo
CAediting_846606chr11_93733734_-SINEAluAluJo
CAediting_846607chr11_93733736_-SINEAluAluJo
CAediting_846608chr11_93733755_-SINEAluAluJo
CAediting_846609chr11_93733773_-SINEAluAluJo
CAediting_846610chr11_93733774_-SINEAluAluJo
CAediting_846611chr11_93733779_-SINEAluAluJo
CAediting_846614chr11_93734803_-SINEAluAluJr
CAediting_846615chr11_93734811_-SINEAluAluJr
CAediting_846616chr11_93734813_-SINEAluAluJr
CAediting_846617chr11_93734814_-SINEAluAluJr
CAediting_846618chr11_93734817_-SINEAluAluJr
CAediting_846619chr11_93734833_-SINEAluAluJr
CAediting_846620chr11_93734836_-SINEAluAluJr
CAediting_846621chr11_93734867_-SINEAluAluJr
CAediting_846622chr11_93734871_-SINEAluAluJr
CAediting_846623chr11_93734884_-SINEAluAluJr
CAediting_846624chr11_93734885_-SINEAluAluJr
CAediting_846625chr11_93734902_-SINEAluAluJr
CAediting_846626chr11_93734912_-SINEAluAluJr
CAediting_846627chr11_93734931_-SINEAluAluJr
CAediting_846628chr11_93734932_-SINEAluAluJr
CAediting_846629chr11_93734933_-SINEAluAluJr
CAediting_846630chr11_93734934_-SINEAluAluJr
CAediting_846631chr11_93734941_-SINEAluAluJr
CAediting_846632chr11_93734942_-SINEAluAluJr
CAediting_846633chr11_93734945_-SINEAluAluJr
CAediting_846634chr11_93734951_-SINEAluAluJr
CAediting_846635chr11_93734955_-SINEAluAluJr
CAediting_846636chr11_93734956_-SINEAluAluJr
CAediting_846637chr11_93734963_-SINEAluAluJr
CAediting_846638chr11_93734964_-SINEAluAluJr
CAediting_846639chr11_93734968_-SINEAluAluJr
CAediting_846640chr11_93734980_-SINEAluAluJr
CAediting_846641chr11_93734982_-SINEAluAluJr
CAediting_846642chr11_93734983_-SINEAluAluJr
CAediting_846643chr11_93734988_-SINEAluAluJr
CAediting_846644chr11_93734991_-SINEAluAluJr
CAediting_846645chr11_93734994_-SINEAluAluJr
CAediting_846646chr11_93734995_-SINEAluAluJr
CAediting_846647chr11_93735004_-SINEAluAluJr
CAediting_846648chr11_93735007_-SINEAluAluJr
CAediting_846649chr11_93735034_-SINEAluAluJr
CAediting_846650chr11_93735035_-SINEAluAluJr
CAediting_846651chr11_93735042_-SINEAluAluJr
CAediting_846652chr11_93735043_-SINEAluAluJr
CAediting_846653chr11_93735049_-SINEAluAluJr
CAediting_846655chr11_93735417_-SINEAluAluSx1
CAediting_846656chr11_93735437_-SINEAluAluSx1
CAediting_846657chr11_93735438_-SINEAluAluSx1
CAediting_846658chr11_93735461_-SINEAluAluSx1
CAediting_846659chr11_93735466_-SINEAluAluSx1
CAediting_846660chr11_93735478_-SINEAluAluSx1
CAediting_846661chr11_93735479_-SINEAluAluSx1
CAediting_846662chr11_93735491_-SINEAluAluSx1
CAediting_846663chr11_93735503_-SINEAluAluSx1
CAediting_846664chr11_93735505_-SINEAluAluSx1
CAediting_846665chr11_93735523_-SINEAluAluSx1
CAediting_846666chr11_93735527_-SINEAluAluSx1
CAediting_846667chr11_93735531_-SINEAluAluSx1
CAediting_846668chr11_93735540_-SINEAluAluSx1
CAediting_846669chr11_93735547_-SINEAluAluSx1
CAediting_846670chr11_93735549_-SINEAluAluSx1
CAediting_846671chr11_93735552_-SINEAluAluSx1
CAediting_846672chr11_93735559_-SINEAluAluSx1
CAediting_846673chr11_93735585_-SINEAluAluSx1
CAediting_846674chr11_93735586_-SINEAluAluSx1
CAediting_846675chr11_93735605_-SINEAluAluSx1
CAediting_846676chr11_93735606_-SINEAluAluSx1
CAediting_846677chr11_93735611_-SINEAluAluSx1
CAediting_846678chr11_93735631_-SINEAluAluSx1
CAediting_846679chr11_93735643_-SINEAluAluSx1
CAediting_846680chr11_93735647_-SINEAluAluSx1
CAediting_846681chr11_93735661_-SINEAluAluSx1
CAediting_846682chr11_93735663_-SINEAluAluSx1
CAediting_846683chr11_93765382_-SINEAluAluJb
CAediting_846684chr11_93765393_-SINEAluAluJb
CAediting_846685chr11_93765400_-SINEAluAluJb
CAediting_846686chr11_93765409_-SINEAluAluJb
CAediting_846687chr11_93765417_-SINEAluAluJb
CAediting_846688chr11_93765430_-SINEAluAluJb
CAediting_846689chr11_93765468_-SINEAluAluJb
CAediting_846690chr11_93765489_-SINEAluAluJb
CAediting_846691chr11_93765499_-SINEAluAluJb
CAediting_846692chr11_93765505_-SINEAluAluJb
CAediting_846693chr11_93765510_-SINEAluAluJb
CAediting_846694chr11_93765513_-SINEAluAluJb
CAediting_846695chr11_93765536_-SINEAluAluJb
CAediting_846696chr11_93765538_-SINEAluAluJb
CAediting_846697chr11_93765954_-SINEAluAluJb
CAediting_846698chr11_93765963_-SINEAluAluJb
CAediting_846699chr11_93765972_-SINEAluAluJb
CAediting_846700chr11_93765975_-SINEAluAluJb
CAediting_846701chr11_93765999_-SINEAluAluJb
CAediting_846702chr11_93766008_-SINEAluAluJb
CAediting_846703chr11_93766011_-SINEAluAluJb
CAediting_846704chr11_93766012_-SINEAluAluJb
CAediting_846705chr11_93766037_-SINEAluAluJb
CAediting_846706chr11_93766072_-SINEAluAluJb
CAediting_846707chr11_93766084_-SINEAluAluJb
CAediting_846708chr11_93766100_-SINEAluAluJb
CAediting_846709chr11_93766106_-SINEAluAluJb
CAediting_846710chr11_93766109_-SINEAluAluJb
CAediting_846711chr11_93766116_-SINEAluAluJb
CAediting_846712chr11_93766128_-SINEAluAluJb
CAediting_846713chr11_93766153_-SINEAluAluJb
CAediting_846714chr11_93766166_-SINEAluAluJb
CAediting_846715chr11_93766202_-SINEAluAluJb
CAediting_846716chr11_93766214_-SINEAluAluJb
CAediting_846717chr11_93766224_-SINEAluAluJb
CAediting_846718chr11_93767519_-SINEAluAluY
CAediting_846719chr11_93767527_-SINEAluAluY
CAediting_846720chr11_93767967_-SINEAluAluJb
CAediting_846721chr11_93767970_-SINEAluAluJb
CAediting_846722chr11_93768010_-SINEAluAluJb
CAediting_846723chr11_93771248_-SINEAluAluJb
CAediting_846724chr11_93771258_-SINEAluAluJb
CAediting_846725chr11_93771297_-SINEAluAluJb
CAediting_846726chr11_93776235_-SINEAluAluJr
CAediting_846727chr11_93780765_-SINEAluAluSx1

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RNA A-to-I editing events in the alternative splicing sites for TAF1D

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_846601chr11_93730714_-93730710:937307323SS0+2iTTTATACTATTGTTATGTAGGGC6.8TTTATACTATTGTTATGTGGGGC-1.16
IRCAediting_846601chr11_93730714_-93730710:937307323SS0+2iTTTATACTATTGTTATGTAGGGC6.8TTTATACTATTGTTATGTGGGGC-1.16
MEX_1CAediting_846601chr11_93730714_-93730710:937307323SS0+2iTTTATACTATTGTTATGTAGGGC6.8TTTATACTATTGTTATGTGGGGC-1.16
ESCAediting_846602chr11_93731801_-93731797:937318193SS0+2iTTGTACAATTCAACTTCTAGGAC8.43TTGTACAATTCAACTTCTGGGAC0.48
IRCAediting_846602chr11_93731801_-93731797:937318193SS0+2iTTGTACAATTCAACTTCTAGGAC8.43TTGTACAATTCAACTTCTGGGAC0.48
IRCAediting_846636chr11_93734956_-93734956:937349645SS0+6iAAGTAAGAA-10.36AAGTAAGAG-10.31
IRCAediting_846637chr11_93734963_-93734956:937349645SS2+0iAAGTAAGAA-10.36AGGTAAGAA-15.87
IRCAediting_846638chr11_93734964_-93734956:937349645SS3+0iAAGTAAGAA-10.36GAGTAAGAA-12.14

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000166012.13.TAF1D.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000166012.13.TAF1D.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TAF1D

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
BLCA.CAediting_846675.ENSG00000166012.TAF1D.png
Soverview
HNSC.CAediting_846660.ENSG00000166012.TAF1D.png
Soverview
KIRC.CAediting_846665.ENSG00000166012.TAF1D.png
Soverview
KIRP.CAediting_846676.ENSG00000166012.TAF1D.png
Soverview
OV.CAediting_846603.ENSG00000166012.TAF1D.png
Soverview
PAAD.CAediting_846604.ENSG00000166012.TAF1D.png
Soverview
PAAD.CAediting_846660.ENSG00000166012.TAF1D.png
Soverview
THYM.CAediting_846604.ENSG00000166012.TAF1D.png
Soverview

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Protein coding region RNA A-to-I editings for TAF1D

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for TAF1D

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_846675chr11_93735605_-ENSG00000166012.13ENST00000448108hsa-miR-17-3p93735605937356117mer-m89373560493735624153.00-18.74
CAediting_846675chr11_93735605_-ENSG00000166012.13ENST00000448108hsa-miR-485-5p93735601937356077mer-m89373560093735620149.00-16.78
CAediting_846675chr11_93735605_-ENSG00000166012.13ENST00000448108hsa-miR-60493735603937356086mer9373560293735621144.00-25.70
CAediting_846675chr11_93735605_-ENSG00000166012.13ENST00000448108hsa-miR-6884-5p93735601937356077mer-m89373560093735622154.00-17.69
CAediting_846681chr11_93735661_-ENSG00000166012.13ENST00000448108hsa-miR-10a-5p93735659937356657mer-m89373565893735680145.00-12.08
CAediting_846681chr11_93735661_-ENSG00000166012.13ENST00000448108hsa-miR-10b-5p93735659937356657mer-m89373565893735680153.00-13.18
CAediting_846681chr11_93735661_-ENSG00000166012.13ENST00000448108hsa-miR-339-5p93735660937356667mer-m89373565993735680145.00-14.96
CAediting_846681chr11_93735661_-ENSG00000166012.13ENST00000448108hsa-miR-4725-5p93735658937356647mer-m89373565793735677140.00-15.96
CAediting_846681chr11_93735661_-ENSG00000166012.13ENST00000448108hsa-miR-504-5p93735658937356647mer-m89373565793735677149.00-18.80
CAediting_846681chr11_93735661_-ENSG00000166012.13ENST00000448108hsa-miR-5699-3p93735661937356677mer-m89373566093735681140.00-16.12
CAediting_846600chr11_93730431_-ENSG00000166012.13ENST00000323981hsa-miR-3156-5p93730426937304327mer-m89373042593730446141.00-15.04
CAediting_846600chr11_93730431_-ENSG00000166012.13ENST00000323981hsa-miR-3156-5p93730426937304327mer-m89373042593730446141.00-15.04
CAediting_846600chr11_93730431_-ENSG00000166012.13ENST00000323981hsa-miR-3156-5p93730426937304327mer-m89373042593730446141.00-15.04
CAediting_846600chr11_93730431_-ENSG00000166012.13ENST00000526015hsa-miR-3156-5p93730426937304327mer-m89373042593730446141.00-15.04
CAediting_846600chr11_93730431_-ENSG00000166012.13ENST00000526015hsa-miR-3156-5p93730426937304327mer-m89373042593730446141.00-15.04
CAediting_846600chr11_93730431_-ENSG00000166012.13ENST00000526015hsa-miR-3156-5p93730426937304327mer-m89373042593730446141.00-15.04
CAediting_846600chr11_93730431_-ENSG00000166012.13ENST00000393259hsa-miR-3156-5p93730426937304327mer-m89373042593730446141.00-15.04
CAediting_846600chr11_93730431_-ENSG00000166012.13ENST00000393259hsa-miR-3156-5p93730426937304327mer-m89373042593730446141.00-15.04
CAediting_846600chr11_93730431_-ENSG00000166012.13ENST00000393259hsa-miR-3156-5p93730426937304327mer-m89373042593730446141.00-15.04
CAediting_846601chr11_93730714_-ENSG00000166012.13ENST00000323981hsa-miR-432393730709937307157mer-m89373070893730725150.00-24.63
CAediting_846601chr11_93730714_-ENSG00000166012.13ENST00000323981hsa-miR-4758-3p93730710937307167mer-m89373070993730731147.00-14.80
CAediting_846673chr11_93735585_-ENSG00000166012.13ENST00000448108hsa-miR-453993735585937355906mer9373558493735603145.00-21.50
CAediting_846673chr11_93735585_-ENSG00000166012.13ENST00000448108hsa-miR-607893735581937355888mer-1a9373558193735599149.00-20.85
CAediting_846679chr11_93735643_-ENSG00000166012.13ENST00000448108hsa-miR-3940-3p93735639937356457mer-m89373563893735659151.00-22.47
CAediting_846680chr11_93735647_-ENSG00000166012.13ENST00000448108hsa-miR-1273c93735646937356516mer9373564593735666152.00-32.55
CAediting_846680chr11_93735647_-ENSG00000166012.13ENST00000448108hsa-miR-1285-3p93735642937356476mer9373564193735662148.00-26.94
CAediting_846680chr11_93735647_-ENSG00000166012.13ENST00000448108hsa-miR-1285-3p93735642937356476mer9373564193735662148.00-26.94
CAediting_846680chr11_93735647_-ENSG00000166012.13ENST00000448108hsa-miR-448693735642937356487mer-m89373564193735658146.00-19.49

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_846679chr11_93735643_-ENSG00000166012.13ENST00000448108hsa-miR-126293735643937356497mer-m89373564293735664144-15.92
CAediting_846680chr11_93735647_-ENSG00000166012.13ENST00000448108hsa-miR-126293735643937356497mer-m89373564293735664144-15.92
CAediting_846678chr11_93735631_-ENSG00000166012.13ENST00000448108hsa-miR-32-5p93735629937356357mer-m89373562893735650143-11.56
CAediting_846678chr11_93735631_-ENSG00000166012.13ENST00000448108hsa-miR-363-3p93735629937356357mer-m89373562893735649151-12.41
CAediting_846681chr11_93735661_-ENSG00000166012.13ENST00000448108hsa-miR-3664-5p93735659937356657mer-m89373565893735679150-15.71
CAediting_846682chr11_93735663_-ENSG00000166012.13ENST00000448108hsa-miR-3664-5p93735659937356657mer-m89373565893735679150-15.71
CAediting_846675chr11_93735605_-ENSG00000166012.13ENST00000448108hsa-miR-377-5p93735601937356077mer-m89373560093735621155-15.08
CAediting_846676chr11_93735606_-ENSG00000166012.13ENST00000448108hsa-miR-377-5p93735601937356077mer-m89373560093735621155-15.08
CAediting_846681chr11_93735661_-ENSG00000166012.13ENST00000448108hsa-miR-452293735658937356647mer-m89373565793735677152-14.23
CAediting_846682chr11_93735663_-ENSG00000166012.13ENST00000448108hsa-miR-452293735658937356647mer-m89373565793735677152-14.23
CAediting_846679chr11_93735643_-ENSG00000166012.13ENST00000448108hsa-miR-4701-3p93735643937356497mer-m89373564293735661153-18.65
CAediting_846680chr11_93735647_-ENSG00000166012.13ENST00000448108hsa-miR-4701-3p93735643937356497mer-m89373564293735661153-18.65
CAediting_846675chr11_93735605_-ENSG00000166012.13ENST00000448108hsa-miR-608693735601937356077mer-m89373560093735620153-21.13
CAediting_846676chr11_93735606_-ENSG00000166012.13ENST00000448108hsa-miR-608693735601937356077mer-m89373560093735620153-21.13
CAediting_846679chr11_93735643_-ENSG00000166012.13ENST00000448108hsa-miR-66193735640937356467mer-m89373563993735662150-21
CAediting_846679chr11_93735643_-ENSG00000166012.13ENST00000448108hsa-miR-6736-5p93735643937356497mer-m89373564293735661149-22.37
CAediting_846680chr11_93735647_-ENSG00000166012.13ENST00000448108hsa-miR-6736-5p93735643937356497mer-m89373564293735661149-22.37
CAediting_846679chr11_93735643_-ENSG00000166012.13ENST00000448108hsa-miR-6742-3p93735641937356477mer-m89373564093735659140-14.94
CAediting_846679chr11_93735643_-ENSG00000166012.13ENST00000448108hsa-miR-6776-5p93735642937356487mer-m89373564193735661151-24.49
CAediting_846680chr11_93735647_-ENSG00000166012.13ENST00000448108hsa-miR-6776-5p93735642937356487mer-m89373564193735661151-24.49
CAediting_846681chr11_93735661_-ENSG00000166012.13ENST00000448108hsa-miR-6888-3p93735661937356677mer-m89373566093735680143-9.14
CAediting_846682chr11_93735663_-ENSG00000166012.13ENST00000448108hsa-miR-6888-3p93735661937356677mer-m89373566093735680143-9.14
CAediting_846678chr11_93735631_-ENSG00000166012.13ENST00000448108hsa-miR-92a-3p93735629937356357mer-m89373562893735650152-23.76
CAediting_846678chr11_93735631_-ENSG00000166012.13ENST00000448108hsa-miR-92a-3p93735629937356357mer-m89373562893735650152-23.76

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000166012.13ENST00000448108hsa-miR-624-3p93736012937360187mer-m89373601193736030147-16.54
CAediting_1368054chr19_46709310_-ENSG00000166012.13ENST00000323981hsa-miR-320e93730413937304197mer-m89373041293730429156-21.95
CAediting_524911chr7_5495852_-ENSG00000166012.13ENST00000323981hsa-miR-589-3p93730121937301277mer-m89373012093730143149-18.79
CAediting_1368054chr19_46709310_-ENSG00000166012.13ENST00000526015hsa-miR-320e93730413937304197mer-m89373041293730429156-21.95
CAediting_1368054chr19_46709310_-ENSG00000166012.13ENST00000393259hsa-miR-320e93730413937304197mer-m89373041293730429156-21.95
CAediting_580943chr7_100356700_+ENSG00000166012.13ENST00000448108hsa-miR-6840-3p93735590937355967mer-m89373558993735610143-25.53

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_573000chr7_92204081_-ENSG00000166012.13ENST00000323981hsa-miR-1285-5p93730906937309127mer-m89373090593730925146-12.22
CAediting_1229415chr17_67471547_+ENSG00000166012.13ENST00000323981hsa-miR-548aa93731135937311417mer-m89373113493731155153-13.2

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TAF1D

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TAF1D

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BLCACAediting_846604chr11_93733708_-8.88508076081734e-050.270913055610862....
LGGCAediting_846604chr11_93733708_-0.004101027854154790.1854131343776795.37799611815404e-080.3435366530370640.01051425259636850.165564690691494
BRCACAediting_846604chr11_93733708_-7.58233836809159e-110.317190021896622....
CESCCAediting_846604chr11_93733708_-9.21300758593566e-060.347844281953092....
LUADCAediting_846604chr11_93733708_-2.88965283656584e-110.393173297408695....
COADCAediting_846604chr11_93733708_-0.000234098035796720.275477954912319....
LUSCCAediting_846604chr11_93733708_-1.9330305766477e-070.303460167892498....
PRADCAediting_846604chr11_93733708_-0.001497374393648240.264044734474504....
HNSCCAediting_846604chr11_93733708_-0.005907729574837150.201677235984118....
STADCAediting_846604chr11_93733708_-0.001174777029923350.204898158183304....
UCECCAediting_846604chr11_93733708_-0.03211931951552760.213422081397535....
KIRPCAediting_846604chr11_93733708_-0.01603463429751960.260527673408043....
PAADCAediting_846604chr11_93733708_-0.01275586074651270.236779013150313....
SKCMCAediting_846604chr11_93733708_-0.03474202676215030.171398791021746....
TGCTCAediting_846604chr11_93733708_-1.47809648535607e-060.482355370598935....
BLCACAediting_846617chr11_93734814_-0.001114769375147850.259438188668828....
LGGCAediting_846617chr11_93734814_-0.01553961116291650.1269173706974842.1000226289179e-200.459960154241045..
BRCACAediting_846617chr11_93734814_-1.94073096709953e-080.254682095663238....
LIHCCAediting_846617chr11_93734814_-0.02412014588625560.216940800549142....
CESCCAediting_846617chr11_93734814_-6.41123178512463e-050.386938426094127....
LUADCAediting_846617chr11_93734814_-1.1565359523428e-080.342764350934128....
LUSCCAediting_846617chr11_93734814_-2.06711013222169e-070.315915965702826..0.03945269963710280.128059074285728
ESCACAediting_846617chr11_93734814_-0.01483470044499890.271531343322506....
PAADCAediting_846617chr11_93734814_-0.0001620124627913290.375686768441771....
SKCMCAediting_846617chr11_93734814_-..0.03912247389774090.178445939276695..
SARCCAediting_846617chr11_93734814_-0.0003343556140525440.43446346772013....
LGGCAediting_846625chr11_93734902_-..2.38416133118429e-100.335263023569613..
LUADCAediting_846625chr11_93734902_-0.0006113925915463420.272211231574712....
LGGCAediting_846642chr11_93734983_-..0.003646778728080570.347914628909907..
LGGCAediting_846646chr11_93734995_-..3.61870614543084e-060.448562015511009..
LGGCAediting_846653chr11_93735049_-..0.001450180447379870.370931360082534..
BLCACAediting_846660chr11_93735478_-0.002806341382016680.240007914798208....
LGGCAediting_846660chr11_93735478_-..7.43188483311533e-090.434759784317177..
BRCACAediting_846660chr11_93735478_-4.38056027315553e-080.257894067023992....
CESCCAediting_846660chr11_93735478_-0.04025790438356930.176780985123854....
LUADCAediting_846660chr11_93735478_-0.0002232338634610730.220836922400855....
COADCAediting_846660chr11_93735478_-0.003550207692465250.222447780551631....
LUSCCAediting_846660chr11_93735478_-7.83049555388056e-060.255684550293893....
PRADCAediting_846660chr11_93735478_-0.009450979982276780.273695600269166....
STADCAediting_846660chr11_93735478_-8.45960832233993e-050.249964887084004....
THCACAediting_846660chr11_93735478_-0.03136327893838910.209223847651189....
KIRPCAediting_846660chr11_93735478_-0.03714761512990680.279236330046408....
READCAediting_846660chr11_93735478_-0.003036471643459680.399560676030315....
TGCTCAediting_846660chr11_93735478_-9.97464484370709e-050.500485939325947....
BRCACAediting_846664chr11_93735505_-..0.0210255683739980.140386671916588..
LUSCCAediting_846664chr11_93735505_-0.043697143812450.158203592056679....
STADCAediting_846664chr11_93735505_-..0.01694411161785060.201547312598742..
LGGCAediting_846665chr11_93735523_-0.04591310564217670.239419118259109....
BRCACAediting_846665chr11_93735523_-0.002298423026049060.20316367959188....
LUADCAediting_846665chr11_93735523_-0.02754878775094960.171584201432405....
LUSCCAediting_846665chr11_93735523_-0.0004311228921384450.267041955767345....
SKCMCAediting_846665chr11_93735523_-....0.01209117608064060.29635678900649
LGGCAediting_846675chr11_93735605_-..0.002512735410517030.240314949439963..
LUSCCAediting_846675chr11_93735605_-0.01038410050742730.151065638254135....
HNSCCAediting_846675chr11_93735605_-0.003583715723062940.216628469797646....
ESCACAediting_846675chr11_93735605_-..0.04430618193865080.166143149684377..
OVCAediting_846675chr11_93735605_-0.01174103601901720.156066685539972....
SKCMCAediting_846675chr11_93735605_-..0.001378172280613950.257230748131241..
TGCTCAediting_846675chr11_93735605_-0.006627640887683480.338667425031159....
TGCTCAediting_846676chr11_93735606_-0.0004749192529540680.467520248148769....

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Relation with cancer stages for TAF1D

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_846604chr11_93733708_-0.0001283062311971890.265588077634562
BLCApathologic_stageCAediting_846660chr11_93735478_-0.001249567462879380.260257021664271
BLCApathologic_stageCAediting_846665chr11_93735523_-0.0003624554889910970.38445274493907
BLCApathologic_stageCAediting_846675chr11_93735605_-0.03906116398470180.170989868634404
BRCApathologic_stageCAediting_846665chr11_93735523_-0.02065541406630120.155957504752172
BRCApathologic_stageCAediting_846676chr11_93735606_-0.009292564473558930.133804833480469
COADpathologic_stageCAediting_846660chr11_93735478_-0.0165294423503410.186951721708759
ESCApathologic_stageCAediting_846604chr11_93733708_-0.0418118058693990.173525414107279
HNSCclinical_stageCAediting_846604chr11_93733708_-0.007023916397303470.203103539780451
HNSCclinical_stageCAediting_846617chr11_93734814_-0.01456437565557060.199136701948698
HNSCclinical_stageCAediting_846665chr11_93735523_-0.01691417703428950.263146090768451
HNSCclinical_stageCAediting_846676chr11_93735606_-0.0007488756427628750.272301346089135
HNSCpathologic_stageCAediting_846604chr11_93733708_-0.0003906369885339940.267413590748699
HNSCpathologic_stageCAediting_846660chr11_93735478_-4.44774594249082e-050.32178525082204
HNSCpathologic_stageCAediting_846665chr11_93735523_-0.02944481836404950.251599783574397
HNSCpathologic_stageCAediting_846675chr11_93735605_-0.01767241506621160.18677907603061
HNSCpathologic_stageCAediting_846676chr11_93735606_-0.007492203971910030.227546640880094
KIRCpathologic_stageCAediting_846604chr11_93733708_-5.34055188448245e-060.320165864279027
KIRCpathologic_stageCAediting_846660chr11_93735478_-0.01888622687351860.166734712326419
KIRCpathologic_stageCAediting_846675chr11_93735605_-0.001925030650900980.194478047721412
KIRPpathologic_stageCAediting_846604chr11_93733708_-0.008362251253237840.312869522693546
KIRPpathologic_stageCAediting_846660chr11_93735478_-0.01402571734643160.356089133516788
KIRPpathologic_stageCAediting_846676chr11_93735606_-0.02680980139120840.301333750933209
LUADpathologic_stageCAediting_846675chr11_93735605_-0.04972078989447950.121135241360771
LUSCpathologic_stageCAediting_846604chr11_93733708_-0.0007067849076770030.20052718896427
LUSCpathologic_stageCAediting_846660chr11_93735478_-0.02769466971896420.127763680795199
LUSCpathologic_stageCAediting_846676chr11_93735606_-0.008114379910662450.156531067956861
SKCMpathologic_stageCAediting_846604chr11_93733708_-0.02373012565759570.196038068169457
SKCMpathologic_stageCAediting_846676chr11_93735606_-0.01926405554717130.234899145877704
STADpathologic_stageCAediting_846604chr11_93733708_-0.03847557955510790.133421466024854

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Relation with survival for TAF1D

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LUADCAediting_846617chr11_93734814_-0.02533143105156790.0250460.0419102
HNSCCAediting_846675chr11_93735605_-0.03982624578262810.02953710.110068
KIRCCAediting_846675chr11_93735605_-0.03223214963737120.03165625.44935
SKCMCAediting_846664chr11_93735505_-0.0003215450537996663.5419e-051300.54

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RelatedDrugs for TAF1D

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TAF1D

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
TAF1DC0037274Dermatologic disorders1CTD_human
TAF1DC0274861Arsenic Poisoning, Inorganic1CTD_human
TAF1DC0274862Nervous System, Organic Arsenic Poisoning1CTD_human
TAF1DC0311375Arsenic Poisoning1CTD_human
TAF1DC0751851Arsenic Encephalopathy1CTD_human
TAF1DC0751852Arsenic Induced Polyneuropathy1CTD_human