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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: C1orf50 (CAeditome ID:79078)

Gene summary for C1orf50

check button Gene summary
Gene informationGene symbol

C1orf50

Gene ID

79078

Gene namechromosome 1 open reading frame 50
Synonyms-
Cytomap

1p34.2

Type of geneprotein-coding
Descriptionuncharacterized protein C1orf50
Modification date20210518
UniProtAcc

Q9BV19

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for C1orf50

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000164008.12
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_53077(42769054, +), CAediting_53078(42770523, +), CAediting_53079(42770606, +), CAediting_53080(42770652, +), CAediting_53081(42770654, +), CAediting_53082(42770694, +), CAediting_53083(42771535, +), CAediting_53084(42771544, +), CAediting_53085(42771604, +), CAediting_53086(42771723, +), CAediting_53087(42771768, +), CAediting_53088(42771867, +), CAediting_53089(42771899, +), CAediting_53090(42772716, +), CAediting_53091(42777121, +), CAediting_53092(42777134, +), CAediting_53093(42777150, +), CAediting_53094(42777160, +), CAediting_53095(42777161, +), CAediting_53096(42777166, +), CAediting_53097(42777176, +), CAediting_53098(42777196, +), CAediting_53099(42777225, +), CAediting_53100(42777230, +), CAediting_53101(42777235, +), CAediting_53102(42777261, +), CAediting_53103(42777276, +), CAediting_53104(42777279, +), CAediting_53105(42777285, +), CAediting_53106(42777330, +), CAediting_53107(42777337, +), CAediting_53108(42777346, +), CAediting_53109(42777379, +), CAediting_53110(42779122, +), CAediting_53111(42779123, +), CAediting_53112(42779128, +), CAediting_53113(42779145, +), CAediting_53114(42779166, +), CAediting_53115(42779169, +), CAediting_53116(42779190, +), CAediting_53117(42779192, +), CAediting_53118(42779194, +), CAediting_53119(42779198, +), CAediting_53120(42779226, +), CAediting_53121(42779227, +), CAediting_53122(42779230, +), CAediting_53123(42779256, +), CAediting_53124(42779257, +), CAediting_53125(42779262, +), CAediting_53126(42779266, +), CAediting_53127(42779297, +), CAediting_53128(42779298, +), CAediting_53129(42779311, +), CAediting_53130(42779318, +), CAediting_53131(42779322, +), CAediting_53132(42779327, +), CAediting_53133(42779337, +), CAediting_53134(42779342, +), CAediting_53135(42779357, +), CAediting_53136(42779359, +), CAediting_53137(42779364, +), CAediting_53138(42780124, +), CAediting_53139(42780126, +), CAediting_53140(42780128, +), CAediting_53141(42780134, +), CAediting_53142(42780142, +), CAediting_53143(42780153, +), CAediting_53144(42780155, +), CAediting_53145(42780158, +), CAediting_53146(42780161, +), CAediting_53147(42780166, +), CAediting_53148(42780172, +), CAediting_53149(42780182, +), CAediting_53150(42780190, +), CAediting_53151(42780202, +), CAediting_53152(42780203, +), CAediting_53153(42780207, +), CAediting_53154(42780220, +), CAediting_53155(42780228, +), CAediting_53156(42780229, +), CAediting_53157(42780232, +), CAediting_53158(42780236, +), CAediting_53159(42780239, +), CAediting_53160(42780242, +), CAediting_53161(42780244, +), CAediting_53162(42780252, +), CAediting_53163(42780268, +), CAediting_53164(42780269, +), CAediting_53165(42780290, +), CAediting_53166(42780298, +), CAediting_53167(42780307, +), CAediting_53168(42780316, +), CAediting_53169(42780525, +), CAediting_53170(42781288, +), CAediting_53171(42781292, +), CAediting_53172(42781302, +), CAediting_53173(42781310, +), CAediting_53174(42781311, +), CAediting_53175(42781316, +), CAediting_53176(42781319, +), CAediting_53177(42781333, +), CAediting_53178(42781334, +), CAediting_53179(42781346, +), CAediting_53180(42781349, +), CAediting_53181(42781354, +), CAediting_53182(42781357, +), CAediting_53183(42781363, +), CAediting_53184(42781378, +), CAediting_53185(42781380, +), CAediting_53186(42781387, +), CAediting_53187(42781388, +), CAediting_53188(42781399, +), CAediting_53189(42781403, +), CAediting_53190(42781408, +), CAediting_53191(42781415, +), CAediting_53192(42781418, +), CAediting_53193(42781444, +), CAediting_53194(42781450, +), CAediting_53195(42781454, +), CAediting_53196(42781467, +), CAediting_53197(42781471, +), CAediting_53198(42781474, +), CAediting_53199(42781477, +), CAediting_53200(42781485, +), CAediting_53201(42781486, +), CAediting_53202(42781504, +), CAediting_53203(42781506, +), CAediting_53204(42781510, +), CAediting_53205(42781515, +), CAediting_53206(42781525, +), CAediting_53207(42781535, +), CAediting_53208(42781545, +), CAediting_53209(42781547, +), CAediting_53210(42781553, +), CAediting_53211(42781555, +), CAediting_53212(42781565, +), CAediting_53213(42781571, +), CAediting_53214(42781572, +), CAediting_53215(42782082, +), CAediting_53216(42782117, +), CAediting_53217(42782141, +), CAediting_53218(42782150, +), CAediting_53219(42782181, +), CAediting_53220(42782191, +), CAediting_53221(42782231, +), CAediting_53222(42782237, +), CAediting_53223(42782241, +), CAediting_53224(42782272, +), CAediting_53225(42782624, +), CAediting_53226(42782632, +), CAediting_53227(42782646, +), CAediting_53228(42782647, +), CAediting_53229(42782651, +), CAediting_53230(42782686, +), CAediting_53231(42782702, +), CAediting_53232(42782718, +), CAediting_53233(42782722, +), CAediting_53234(42782753, +), CAediting_53235(42783530, +),

Top

RNA editing positional annotations for C1orf50 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_53077chr1_42769054_+intronic
CAediting_53078chr1_42770523_+ncRNA_intronic
CAediting_53079chr1_42770606_+ncRNA_intronic
CAediting_53080chr1_42770652_+ncRNA_intronic
CAediting_53081chr1_42770654_+ncRNA_intronic
CAediting_53082chr1_42770694_+ncRNA_intronic
CAediting_53083chr1_42771535_+ncRNA_intronic
CAediting_53084chr1_42771544_+ncRNA_intronic
CAediting_53085chr1_42771604_+ncRNA_intronic
CAediting_53086chr1_42771723_+ncRNA_intronic
CAediting_53087chr1_42771768_+ncRNA_intronic
CAediting_53088chr1_42771867_+ncRNA_intronic
CAediting_53089chr1_42771899_+ncRNA_intronic
CAediting_53090chr1_42772716_+ncRNA_intronic
CAediting_53091chr1_42777121_+intronic
CAediting_53092chr1_42777134_+intronic
CAediting_53093chr1_42777150_+intronic
CAediting_53094chr1_42777160_+intronic
CAediting_53095chr1_42777161_+intronic
CAediting_53096chr1_42777166_+intronic
CAediting_53097chr1_42777176_+intronic
CAediting_53098chr1_42777196_+intronic
CAediting_53099chr1_42777225_+intronic
CAediting_53100chr1_42777230_+intronic
CAediting_53101chr1_42777235_+intronic
CAediting_53102chr1_42777261_+intronic
CAediting_53103chr1_42777276_+intronic
CAediting_53104chr1_42777279_+intronic
CAediting_53105chr1_42777285_+intronic
CAediting_53106chr1_42777330_+intronic
CAediting_53107chr1_42777337_+intronic
CAediting_53108chr1_42777346_+intronic
CAediting_53109chr1_42777379_+intronic
CAediting_53110chr1_42779122_+intronic
CAediting_53111chr1_42779123_+intronic
CAediting_53112chr1_42779128_+intronic
CAediting_53113chr1_42779145_+intronic
CAediting_53114chr1_42779166_+intronic
CAediting_53115chr1_42779169_+intronic
CAediting_53116chr1_42779190_+intronic
CAediting_53117chr1_42779192_+intronic
CAediting_53118chr1_42779194_+intronic
CAediting_53119chr1_42779198_+intronic
CAediting_53120chr1_42779226_+intronic
CAediting_53121chr1_42779227_+intronic
CAediting_53122chr1_42779230_+intronic
CAediting_53123chr1_42779256_+intronic
CAediting_53124chr1_42779257_+intronic
CAediting_53125chr1_42779262_+intronic
CAediting_53126chr1_42779266_+intronic
CAediting_53127chr1_42779297_+intronic
CAediting_53128chr1_42779298_+intronic
CAediting_53129chr1_42779311_+intronic
CAediting_53130chr1_42779318_+intronic
CAediting_53131chr1_42779322_+intronic
CAediting_53132chr1_42779327_+intronic
CAediting_53133chr1_42779337_+intronic
CAediting_53134chr1_42779342_+intronic
CAediting_53135chr1_42779357_+intronic
CAediting_53136chr1_42779359_+intronic
CAediting_53137chr1_42779364_+intronic
CAediting_53138chr1_42780124_+intronic
CAediting_53139chr1_42780126_+intronic
CAediting_53140chr1_42780128_+intronic
CAediting_53141chr1_42780134_+intronic
CAediting_53142chr1_42780142_+intronic
CAediting_53143chr1_42780153_+intronic
CAediting_53144chr1_42780155_+intronic
CAediting_53145chr1_42780158_+intronic
CAediting_53146chr1_42780161_+intronic
CAediting_53147chr1_42780166_+intronic
CAediting_53148chr1_42780172_+intronic
CAediting_53149chr1_42780182_+intronic
CAediting_53150chr1_42780190_+intronic
CAediting_53151chr1_42780202_+intronic
CAediting_53152chr1_42780203_+intronic
CAediting_53153chr1_42780207_+intronic
CAediting_53154chr1_42780220_+intronic
CAediting_53155chr1_42780228_+intronic
CAediting_53156chr1_42780229_+intronic
CAediting_53157chr1_42780232_+intronic
CAediting_53158chr1_42780236_+intronic
CAediting_53159chr1_42780239_+intronic
CAediting_53160chr1_42780242_+intronic
CAediting_53161chr1_42780244_+intronic
CAediting_53162chr1_42780252_+intronic
CAediting_53163chr1_42780268_+intronic
CAediting_53164chr1_42780269_+intronic
CAediting_53165chr1_42780290_+intronic
CAediting_53166chr1_42780298_+intronic
CAediting_53167chr1_42780307_+intronic
CAediting_53168chr1_42780316_+intronic
CAediting_53169chr1_42780525_+intronic
CAediting_53170chr1_42781288_+intronic
CAediting_53171chr1_42781292_+intronic
CAediting_53172chr1_42781302_+intronic
CAediting_53173chr1_42781310_+intronic
CAediting_53174chr1_42781311_+intronic
CAediting_53175chr1_42781316_+intronic
CAediting_53176chr1_42781319_+intronic
CAediting_53177chr1_42781333_+intronic
CAediting_53178chr1_42781334_+intronic
CAediting_53179chr1_42781346_+intronic
CAediting_53180chr1_42781349_+intronic
CAediting_53181chr1_42781354_+intronic
CAediting_53182chr1_42781357_+intronic
CAediting_53183chr1_42781363_+intronic
CAediting_53184chr1_42781378_+intronic
CAediting_53185chr1_42781380_+intronic
CAediting_53186chr1_42781387_+intronic
CAediting_53187chr1_42781388_+intronic
CAediting_53188chr1_42781399_+intronic
CAediting_53189chr1_42781403_+intronic
CAediting_53190chr1_42781408_+intronic
CAediting_53191chr1_42781415_+intronic
CAediting_53192chr1_42781418_+intronic
CAediting_53193chr1_42781444_+intronic
CAediting_53194chr1_42781450_+intronic
CAediting_53195chr1_42781454_+intronic
CAediting_53196chr1_42781467_+intronic
CAediting_53197chr1_42781471_+intronic
CAediting_53198chr1_42781474_+intronic
CAediting_53199chr1_42781477_+intronic
CAediting_53200chr1_42781485_+intronic
CAediting_53201chr1_42781486_+intronic
CAediting_53202chr1_42781504_+intronic
CAediting_53203chr1_42781506_+intronic
CAediting_53204chr1_42781510_+intronic
CAediting_53205chr1_42781515_+intronic
CAediting_53206chr1_42781525_+intronic
CAediting_53207chr1_42781535_+intronic
CAediting_53208chr1_42781545_+intronic
CAediting_53209chr1_42781547_+intronic
CAediting_53210chr1_42781553_+intronic
CAediting_53211chr1_42781555_+intronic
CAediting_53212chr1_42781565_+intronic
CAediting_53213chr1_42781571_+intronic
CAediting_53214chr1_42781572_+intronic
CAediting_53215chr1_42782082_+intronic
CAediting_53216chr1_42782117_+intronic
CAediting_53217chr1_42782141_+intronic
CAediting_53218chr1_42782150_+intronic
CAediting_53219chr1_42782181_+intronic
CAediting_53220chr1_42782191_+intronic
CAediting_53221chr1_42782231_+intronic
CAediting_53222chr1_42782237_+intronic
CAediting_53223chr1_42782241_+intronic
CAediting_53224chr1_42782272_+intronic
CAediting_53225chr1_42782624_+intronic
CAediting_53226chr1_42782632_+intronic
CAediting_53227chr1_42782646_+intronic
CAediting_53228chr1_42782647_+intronic
CAediting_53229chr1_42782651_+intronic
CAediting_53230chr1_42782686_+intronic
CAediting_53231chr1_42782702_+intronic
CAediting_53232chr1_42782718_+intronic
CAediting_53233chr1_42782722_+intronic
CAediting_53234chr1_42782753_+intronic
CAediting_53235chr1_42783530_+intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_53077chr1_42769054_+SINEAluAluSz
CAediting_53078chr1_42770523_+SINEAluAluSp
CAediting_53079chr1_42770606_+SINEAluAluSp
CAediting_53080chr1_42770652_+SINEAluAluSp
CAediting_53081chr1_42770654_+SINEAluAluSp
CAediting_53082chr1_42770694_+SINEAluAluSp
CAediting_53083chr1_42771535_+DNAhAT-CharlieCharlie5
CAediting_53084chr1_42771544_+DNAhAT-CharlieCharlie5
CAediting_53085chr1_42771604_+DNAhAT-CharlieCharlie5
CAediting_53086chr1_42771723_+SINEAluAluSz6
CAediting_53087chr1_42771768_+SINEAluAluSz6
CAediting_53088chr1_42771867_+SINEAluAluSz6
CAediting_53089chr1_42771899_+SINEAluAluSz6
CAediting_53090chr1_42772716_+SINEAluAluSq2
CAediting_53091chr1_42777121_+SINEAluAluSc
CAediting_53092chr1_42777134_+SINEAluAluSc
CAediting_53093chr1_42777150_+SINEAluAluSc
CAediting_53094chr1_42777160_+SINEAluAluSc
CAediting_53095chr1_42777161_+SINEAluAluSc
CAediting_53096chr1_42777166_+SINEAluAluSc
CAediting_53097chr1_42777176_+SINEAluAluSc
CAediting_53098chr1_42777196_+SINEAluAluSc
CAediting_53099chr1_42777225_+SINEAluAluSc
CAediting_53100chr1_42777230_+SINEAluAluSc
CAediting_53101chr1_42777235_+SINEAluAluSc
CAediting_53102chr1_42777261_+SINEAluAluSc
CAediting_53103chr1_42777276_+SINEAluAluSc
CAediting_53104chr1_42777279_+SINEAluAluSc
CAediting_53105chr1_42777285_+SINEAluAluSc
CAediting_53106chr1_42777330_+SINEAluAluSc
CAediting_53107chr1_42777337_+SINEAluAluSc
CAediting_53108chr1_42777346_+SINEAluAluSc
CAediting_53109chr1_42777379_+SINEAluAluSc
CAediting_53110chr1_42779122_+SINEAluAluY
CAediting_53111chr1_42779123_+SINEAluAluY
CAediting_53112chr1_42779128_+SINEAluAluY
CAediting_53113chr1_42779145_+SINEAluAluY
CAediting_53114chr1_42779166_+SINEAluAluY
CAediting_53115chr1_42779169_+SINEAluAluY
CAediting_53116chr1_42779190_+SINEAluAluY
CAediting_53117chr1_42779192_+SINEAluAluY
CAediting_53118chr1_42779194_+SINEAluAluY
CAediting_53119chr1_42779198_+SINEAluAluY
CAediting_53120chr1_42779226_+SINEAluAluY
CAediting_53121chr1_42779227_+SINEAluAluY
CAediting_53122chr1_42779230_+SINEAluAluY
CAediting_53123chr1_42779256_+SINEAluAluY
CAediting_53124chr1_42779257_+SINEAluAluY
CAediting_53125chr1_42779262_+SINEAluAluY
CAediting_53126chr1_42779266_+SINEAluAluY
CAediting_53127chr1_42779297_+SINEAluAluY
CAediting_53128chr1_42779298_+SINEAluAluY
CAediting_53129chr1_42779311_+SINEAluAluY
CAediting_53130chr1_42779318_+SINEAluAluY
CAediting_53131chr1_42779322_+SINEAluAluY
CAediting_53132chr1_42779327_+SINEAluAluY
CAediting_53133chr1_42779337_+SINEAluAluY
CAediting_53134chr1_42779342_+SINEAluAluY
CAediting_53135chr1_42779357_+SINEAluAluY
CAediting_53136chr1_42779359_+SINEAluAluY
CAediting_53137chr1_42779364_+SINEAluAluY
CAediting_53138chr1_42780124_+SINEAluAluJr
CAediting_53139chr1_42780126_+SINEAluAluJr
CAediting_53140chr1_42780128_+SINEAluAluJr
CAediting_53141chr1_42780134_+SINEAluAluJr
CAediting_53142chr1_42780142_+SINEAluAluJr
CAediting_53143chr1_42780153_+SINEAluAluJr
CAediting_53144chr1_42780155_+SINEAluAluJr
CAediting_53145chr1_42780158_+SINEAluAluJr
CAediting_53146chr1_42780161_+SINEAluAluJr
CAediting_53147chr1_42780166_+SINEAluAluJr
CAediting_53148chr1_42780172_+SINEAluAluJr
CAediting_53149chr1_42780182_+SINEAluAluJr
CAediting_53150chr1_42780190_+SINEAluAluJr
CAediting_53151chr1_42780202_+SINEAluAluJr
CAediting_53152chr1_42780203_+SINEAluAluJr
CAediting_53153chr1_42780207_+SINEAluAluJr
CAediting_53154chr1_42780220_+SINEAluAluJr
CAediting_53155chr1_42780228_+SINEAluAluJr
CAediting_53156chr1_42780229_+SINEAluAluJr
CAediting_53157chr1_42780232_+SINEAluAluJr
CAediting_53158chr1_42780236_+SINEAluAluJr
CAediting_53159chr1_42780239_+SINEAluAluJr
CAediting_53160chr1_42780242_+SINEAluAluJr
CAediting_53161chr1_42780244_+SINEAluAluJr
CAediting_53162chr1_42780252_+SINEAluAluJr
CAediting_53163chr1_42780268_+SINEAluAluJr
CAediting_53164chr1_42780269_+SINEAluAluJr
CAediting_53165chr1_42780290_+SINEAluAluJr
CAediting_53166chr1_42780298_+SINEAluAluJr
CAediting_53167chr1_42780307_+SINEAluAluJr
CAediting_53168chr1_42780316_+SINEAluAluJr
CAediting_53170chr1_42781288_+SINEAluAluY
CAediting_53171chr1_42781292_+SINEAluAluY
CAediting_53172chr1_42781302_+SINEAluAluY
CAediting_53173chr1_42781310_+SINEAluAluY
CAediting_53174chr1_42781311_+SINEAluAluY
CAediting_53175chr1_42781316_+SINEAluAluY
CAediting_53176chr1_42781319_+SINEAluAluY
CAediting_53177chr1_42781333_+SINEAluAluY
CAediting_53178chr1_42781334_+SINEAluAluY
CAediting_53179chr1_42781346_+SINEAluAluY
CAediting_53180chr1_42781349_+SINEAluAluY
CAediting_53181chr1_42781354_+SINEAluAluY
CAediting_53182chr1_42781357_+SINEAluAluY
CAediting_53183chr1_42781363_+SINEAluAluY
CAediting_53184chr1_42781378_+SINEAluAluY
CAediting_53185chr1_42781380_+SINEAluAluY
CAediting_53186chr1_42781387_+SINEAluAluY
CAediting_53187chr1_42781388_+SINEAluAluY
CAediting_53188chr1_42781399_+SINEAluAluY
CAediting_53189chr1_42781403_+SINEAluAluY
CAediting_53190chr1_42781408_+SINEAluAluY
CAediting_53191chr1_42781415_+SINEAluAluY
CAediting_53192chr1_42781418_+SINEAluAluY
CAediting_53193chr1_42781444_+SINEAluAluY
CAediting_53194chr1_42781450_+SINEAluAluY
CAediting_53195chr1_42781454_+SINEAluAluY
CAediting_53196chr1_42781467_+SINEAluAluY
CAediting_53197chr1_42781471_+SINEAluAluY
CAediting_53198chr1_42781474_+SINEAluAluY
CAediting_53199chr1_42781477_+SINEAluAluY
CAediting_53200chr1_42781485_+SINEAluAluY
CAediting_53201chr1_42781486_+SINEAluAluY
CAediting_53202chr1_42781504_+SINEAluAluY
CAediting_53203chr1_42781506_+SINEAluAluY
CAediting_53204chr1_42781510_+SINEAluAluY
CAediting_53205chr1_42781515_+SINEAluAluY
CAediting_53206chr1_42781525_+SINEAluAluY
CAediting_53207chr1_42781535_+SINEAluAluY
CAediting_53208chr1_42781545_+SINEAluAluY
CAediting_53209chr1_42781547_+SINEAluAluY
CAediting_53210chr1_42781553_+SINEAluAluY
CAediting_53211chr1_42781555_+SINEAluAluY
CAediting_53212chr1_42781565_+SINEAluAluY
CAediting_53213chr1_42781571_+SINEAluAluY
CAediting_53214chr1_42781572_+SINEAluAluY
CAediting_53215chr1_42782082_+SINEAluAluSx1
CAediting_53216chr1_42782117_+SINEAluAluSx1
CAediting_53217chr1_42782141_+SINEAluAluSx1
CAediting_53218chr1_42782150_+SINEAluAluSx1
CAediting_53219chr1_42782181_+SINEAluAluSx1
CAediting_53220chr1_42782191_+SINEAluAluSx1
CAediting_53221chr1_42782231_+SINEAluAluSx1
CAediting_53222chr1_42782237_+SINEAluAluSx1
CAediting_53223chr1_42782241_+SINEAluAluSx1
CAediting_53224chr1_42782272_+SINEAluAluSx1
CAediting_53225chr1_42782624_+SINEAluAluJo
CAediting_53226chr1_42782632_+SINEAluAluJo
CAediting_53227chr1_42782646_+SINEAluAluJo
CAediting_53228chr1_42782647_+SINEAluAluJo
CAediting_53229chr1_42782651_+SINEAluAluJo
CAediting_53230chr1_42782686_+SINEAluAluJo
CAediting_53231chr1_42782702_+SINEAluAluJo
CAediting_53232chr1_42782718_+SINEAluAluJo
CAediting_53233chr1_42782722_+SINEAluAluJo
CAediting_53234chr1_42782753_+SINEAluAluJo
CAediting_53235chr1_42783530_+SINEAluAluSx3

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RNA A-to-I editing events in the alternative splicing sites for C1orf50

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000164008.12.C1orf50.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000164008.12.C1orf50.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for C1orf50

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for C1orf50

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for C1orf50

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_442554chr5_154685830_+ENSG00000164008.12ENST00000464081hsa-miR-130342774859427748668mer-1a4277484542774866146-12.36

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for C1orf50

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for C1orf50

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LGGCAediting_53141chr1_42780134_+0.01082678948162590.197324277663....
OVCAediting_53141chr1_42780134_+0.03170858365693560.266762081442678....
LGGCAediting_53142chr1_42780142_+0.01282742458741030.264320870529453....
LGGCAediting_53146chr1_42780161_+0.03543534411274370.176059659361808....
OVCAediting_53146chr1_42780161_+0.02055688750886830.255425198829347....
LGGCAediting_53157chr1_42780232_+..1.57551968676556e-060.5158492273702170.01523702043686980.275675156245133
LGGCAediting_53158chr1_42780236_+0.04933129714471350.19234156104719....
LGGCAediting_53167chr1_42780307_+0.000343342307838040.346026719682175....
THCACAediting_53193chr1_42781444_+0.03518144022405820.255896725267722....
THCACAediting_53194chr1_42781450_+0.04116560534553670.209928793351415....

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Relation with cancer stages for C1orf50

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
OVclinical_stageCAediting_53202chr1_42781504_+0.04326147082007190.281434815958286
THCApathologic_stageCAediting_53194chr1_42781450_+0.00580393750352355-0.282493564960907

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Relation with survival for C1orf50

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for C1orf50

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for C1orf50

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource