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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: DDX54 (CAeditome ID:79039) |
Gene summary for DDX54 |
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Gene information | Gene symbol | DDX54 | Gene ID | 79039 |
Gene name | DEAD-box helicase 54 | |
Synonyms | DP97 | |
Cytomap | 12q24.13 | |
Type of gene | protein-coding | |
Description | ATP-dependent RNA helicase DDX54ATP-dependent RNA helicase DP97DEAD (Asp-Glu-Ala-Asp) box polypeptide 54DEAD box RNA helicase 97 kDaDEAD box helicase 97 KDaDEAD box protein 54 | |
Modification date | 20210518 | |
UniProtAcc | Q8TDD1 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
DDX54 | GO:0003714 | ATP-dependent RNA helicase DDX54 | 12466272 |
DDX54 | GO:0003724 | ATP-dependent RNA helicase DDX54 | 12466272 |
DDX54 | GO:0005102 | ATP-dependent RNA helicase DDX54 | 12466272 |
DDX54 | GO:0030331 | ATP-dependent RNA helicase DDX54 | 12466272 |
DDX54 | GO:0006396 | ATP-dependent RNA helicase DDX54 | 12466272 |
DDX54 | GO:0016070 | ATP-dependent RNA helicase DDX54 | 12466272 |
DDX54 | GO:0005634 | ATP-dependent RNA helicase DDX54 | 12466272 |
DDX54 | GO:0005654 | ATP-dependent RNA helicase DDX54 | 0000052 |
DDX54 | GO:0005730 | ATP-dependent RNA helicase DDX54 | 0000052 |
DDX54 | GO:0005730 | ATP-dependent RNA helicase DDX54 | 12466272 |
DDX54 | GO:0005794 | ATP-dependent RNA helicase DDX54 | 0000052 |
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RNA A-to-I events for DDX54 |
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CAediting_929619(113177993, -), CAediting_929620(113178018, -), CAediting_929621(113178044, -), CAediting_929622(113178048, -), CAediting_929623(113178093, -), CAediting_929624(113178113, -), CAediting_929625(113178115, -), CAediting_929626(113178125, -), CAediting_929627(113178175, -), CAediting_929628(113178180, -), CAediting_929629(113178181, -), CAediting_929630(113178185, -), CAediting_929631(113178187, -), CAediting_929632(113178201, -), CAediting_929633(113178215, -), CAediting_929634(113178555, -), CAediting_929635(113178589, -), CAediting_929636(113178610, -), CAediting_929637(113178615, -), CAediting_929638(113178626, -), CAediting_929639(113178639, -), CAediting_929640(113178653, -), CAediting_929641(113178680, -), CAediting_929642(113178681, -), CAediting_929643(113178707, -), CAediting_929644(113178710, -), CAediting_929645(113178711, -), CAediting_929646(113178712, -), CAediting_929647(113178713, -), CAediting_929648(113178716, -), CAediting_929649(113178718, -), CAediting_929650(113178719, -), CAediting_929651(113178720, -), CAediting_929652(113178721, -), CAediting_929653(113178722, -), CAediting_929654(113178725, -), CAediting_929655(113178739, -), CAediting_929656(113178746, -), CAediting_929657(113178756, -), CAediting_929658(113178761, -), CAediting_929659(113178770, -), CAediting_929660(113178775, -), CAediting_929661(113178785, -), CAediting_929662(113178810, -), CAediting_929663(113178815, -), CAediting_929664(113178816, -), CAediting_929665(113178824, -), CAediting_929666(113181408, -), CAediting_929667(113182721, -), CAediting_929668(113182730, -), CAediting_929669(113184085, -), CAediting_929670(113184709, -), CAediting_929671(113184714, -), |
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RNA editing positional annotations for DDX54 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_929619 | chr12_113177993_- | intronic |
CAediting_929620 | chr12_113178018_- | intronic |
CAediting_929621 | chr12_113178044_- | intronic |
CAediting_929622 | chr12_113178048_- | intronic |
CAediting_929623 | chr12_113178093_- | intronic |
CAediting_929624 | chr12_113178113_- | intronic |
CAediting_929625 | chr12_113178115_- | intronic |
CAediting_929626 | chr12_113178125_- | intronic |
CAediting_929627 | chr12_113178175_- | intronic |
CAediting_929628 | chr12_113178180_- | intronic |
CAediting_929629 | chr12_113178181_- | intronic |
CAediting_929630 | chr12_113178185_- | intronic |
CAediting_929631 | chr12_113178187_- | intronic |
CAediting_929632 | chr12_113178201_- | intronic |
CAediting_929633 | chr12_113178215_- | intronic |
CAediting_929634 | chr12_113178555_- | intronic |
CAediting_929635 | chr12_113178589_- | intronic |
CAediting_929636 | chr12_113178610_- | intronic |
CAediting_929637 | chr12_113178615_- | intronic |
CAediting_929638 | chr12_113178626_- | intronic |
CAediting_929639 | chr12_113178639_- | intronic |
CAediting_929640 | chr12_113178653_- | intronic |
CAediting_929641 | chr12_113178680_- | intronic |
CAediting_929642 | chr12_113178681_- | intronic |
CAediting_929643 | chr12_113178707_- | intronic |
CAediting_929644 | chr12_113178710_- | intronic |
CAediting_929645 | chr12_113178711_- | intronic |
CAediting_929646 | chr12_113178712_- | intronic |
CAediting_929647 | chr12_113178713_- | intronic |
CAediting_929648 | chr12_113178716_- | intronic |
CAediting_929649 | chr12_113178718_- | intronic |
CAediting_929650 | chr12_113178719_- | intronic |
CAediting_929651 | chr12_113178720_- | intronic |
CAediting_929652 | chr12_113178721_- | intronic |
CAediting_929653 | chr12_113178722_- | intronic |
CAediting_929654 | chr12_113178725_- | intronic |
CAediting_929655 | chr12_113178739_- | intronic |
CAediting_929656 | chr12_113178746_- | intronic |
CAediting_929657 | chr12_113178756_- | intronic |
CAediting_929658 | chr12_113178761_- | intronic |
CAediting_929659 | chr12_113178770_- | intronic |
CAediting_929660 | chr12_113178775_- | intronic |
CAediting_929661 | chr12_113178785_- | intronic |
CAediting_929662 | chr12_113178810_- | intronic |
CAediting_929663 | chr12_113178815_- | intronic |
CAediting_929664 | chr12_113178816_- | intronic |
CAediting_929665 | chr12_113178824_- | intronic |
CAediting_929666 | chr12_113181408_- | intronic |
CAediting_929667 | chr12_113182721_- | intronic |
CAediting_929668 | chr12_113182730_- | intronic |
CAediting_929669 | chr12_113184085_- | intronic |
CAediting_929670 | chr12_113184709_- | intronic |
CAediting_929671 | chr12_113184714_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_929619 | chr12_113177993_- | SINE | Alu | AluJb |
CAediting_929620 | chr12_113178018_- | SINE | Alu | AluJb |
CAediting_929621 | chr12_113178044_- | SINE | Alu | AluJb |
CAediting_929622 | chr12_113178048_- | SINE | Alu | AluJb |
CAediting_929623 | chr12_113178093_- | SINE | Alu | AluJb |
CAediting_929624 | chr12_113178113_- | SINE | Alu | AluJb |
CAediting_929625 | chr12_113178115_- | SINE | Alu | AluJb |
CAediting_929626 | chr12_113178125_- | SINE | Alu | AluJb |
CAediting_929627 | chr12_113178175_- | SINE | Alu | AluJb |
CAediting_929628 | chr12_113178180_- | SINE | Alu | AluJb |
CAediting_929629 | chr12_113178181_- | SINE | Alu | AluJb |
CAediting_929630 | chr12_113178185_- | SINE | Alu | AluJb |
CAediting_929631 | chr12_113178187_- | SINE | Alu | AluJb |
CAediting_929632 | chr12_113178201_- | SINE | Alu | AluJb |
CAediting_929633 | chr12_113178215_- | SINE | Alu | AluJb |
CAediting_929634 | chr12_113178555_- | SINE | Alu | AluSx |
CAediting_929635 | chr12_113178589_- | SINE | Alu | AluSx |
CAediting_929636 | chr12_113178610_- | SINE | Alu | AluSx |
CAediting_929637 | chr12_113178615_- | SINE | Alu | AluSx |
CAediting_929638 | chr12_113178626_- | SINE | Alu | AluSx |
CAediting_929639 | chr12_113178639_- | SINE | Alu | AluSx |
CAediting_929640 | chr12_113178653_- | SINE | Alu | AluSx |
CAediting_929641 | chr12_113178680_- | SINE | Alu | AluSx |
CAediting_929642 | chr12_113178681_- | SINE | Alu | AluSx |
CAediting_929643 | chr12_113178707_- | SINE | Alu | AluSx |
CAediting_929644 | chr12_113178710_- | SINE | Alu | AluSx |
CAediting_929645 | chr12_113178711_- | SINE | Alu | AluSx |
CAediting_929646 | chr12_113178712_- | SINE | Alu | AluSx |
CAediting_929647 | chr12_113178713_- | SINE | Alu | AluSx |
CAediting_929648 | chr12_113178716_- | SINE | Alu | AluSx |
CAediting_929649 | chr12_113178718_- | SINE | Alu | AluSx |
CAediting_929650 | chr12_113178719_- | SINE | Alu | AluSx |
CAediting_929651 | chr12_113178720_- | SINE | Alu | AluSx |
CAediting_929652 | chr12_113178721_- | SINE | Alu | AluSx |
CAediting_929653 | chr12_113178722_- | SINE | Alu | AluSx |
CAediting_929654 | chr12_113178725_- | SINE | Alu | AluSx |
CAediting_929655 | chr12_113178739_- | SINE | Alu | AluSx |
CAediting_929656 | chr12_113178746_- | SINE | Alu | AluSx |
CAediting_929657 | chr12_113178756_- | SINE | Alu | AluSx |
CAediting_929658 | chr12_113178761_- | SINE | Alu | AluSx |
CAediting_929659 | chr12_113178770_- | SINE | Alu | AluSx |
CAediting_929660 | chr12_113178775_- | SINE | Alu | AluSx |
CAediting_929661 | chr12_113178785_- | SINE | Alu | AluSx |
CAediting_929662 | chr12_113178810_- | SINE | Alu | AluSx |
CAediting_929663 | chr12_113178815_- | SINE | Alu | AluSx |
CAediting_929664 | chr12_113178816_- | SINE | Alu | AluSx |
CAediting_929665 | chr12_113178824_- | SINE | Alu | AluSx |
CAediting_929666 | chr12_113181408_- | SINE | Alu | AluJr |
CAediting_929667 | chr12_113182721_- | SINE | Alu | AluSz |
CAediting_929668 | chr12_113182730_- | SINE | Alu | AluSz |
CAediting_929669 | chr12_113184085_- | SINE | Alu | AluSx |
CAediting_929670 | chr12_113184709_- | SINE | Alu | AluJr |
CAediting_929671 | chr12_113184714_- | SINE | Alu | AluJr |
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RNA A-to-I editing events in the alternative splicing sites for DDX54 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
ES | CAediting_929624 | chr12_113178113_- | 113178105:113178113 | 5SS | 3+0i | AGGTGTGCA | -27.62 | GGGTGTGCA | -31.5 |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for DDX54 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for DDX54 |
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The effects of the RNA editing to the miRNA binding sites for DDX54 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_980496 | chr14_31014685_- | ENSG00000123064.11 | ENST00000314045 | hsa-miR-624-3p | 113158007 | 113158013 | 7mer-m8 | 113158006 | 113158027 | 146 | -13.25 |
CAediting_604450 | chr7_133034877_- | ENSG00000123064.11 | ENST00000314045 | hsa-miR-3654 | 113157550 | 113157556 | 7mer-m8 | 113157549 | 113157565 | 147 | -20.18 |
CAediting_77128 | chr1_85133844_+ | ENSG00000123064.11 | ENST00000551344 | hsa-miR-4423-3p | 113179216 | 113179222 | 7mer-m8 | 113179215 | 113179235 | 140 | -12.68 |
CAediting_396018 | chr5_1062918_- | ENSG00000123064.11 | ENST00000551344 | hsa-miR-4635 | 113179002 | 113179009 | 8mer-1a | 113179002 | 113179024 | 162 | -24.8 |
CAediting_468389 | chr6_31355314_- | ENSG00000123064.11 | ENST00000314045 | hsa-miR-6891-5p | 113157883 | 113157890 | 8mer-1a | 113157883 | 113157900 | 151 | -26.57 |
CAediting_468389 | chr6_31355314_- | ENSG00000123064.11 | ENST00000551344 | hsa-miR-6891-5p | 113179251 | 113179257 | 7mer-m8 | 113179250 | 113179268 | 147 | -22.79 |
CAediting_1524209 | chrX_134546392_- | ENSG00000123064.11 | ENST00000551344 | hsa-miR-503-5p | 113175065 | 113175071 | 7mer-m8 | 113175064 | 113175092 | 151 | -26.57 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1524209 | chrX_134546392_- | ENSG00000123064.11 | ENST00000314045 | hsa-miR-503-5p | 113157694 | 113157700 | 7mer-m8 | 113157693 | 113157715 | 155 | -23.35 |
CAediting_1524209 | chrX_134546392_- | ENSG00000123064.11 | ENST00000314045 | hsa-miR-503-5p | 113158605 | 113158610 | 6mer | 113158598 | 113158620 | 141 | -19.53 |
CAediting_1524209 | chrX_134546392_- | ENSG00000123064.11 | ENST00000314045 | hsa-miR-503-5p | 113158602 | 113158607 | 6mer | 113158598 | 113158620 | 141 | -19.53 |
CAediting_1524209 | chrX_134546392_- | ENSG00000123064.11 | ENST00000314045 | hsa-miR-503-5p | 113158599 | 113158604 | 6mer | 113158598 | 113158620 | 141 | -19.53 |
CAediting_980496 | chr14_31014685_- | ENSG00000123064.11 | ENST00000314045 | hsa-miR-624-3p | 113158374 | 113158379 | 6mer | 113158373 | 113158394 | 142 | -18.45 |
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The effects of the RNA editing to the stability of the RNA structures for DDX54 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for DDX54 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for DDX54 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for DDX54 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for DDX54 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for DDX54 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
DDX54 | C0023903 | Liver neoplasms | 1 | CTD_human |
DDX54 | C0032460 | Polycystic Ovary Syndrome | 1 | CTD_human |
DDX54 | C0032927 | Precancerous Conditions | 1 | CTD_human |
DDX54 | C0282313 | Condition, Preneoplastic | 1 | CTD_human |
DDX54 | C0345904 | Malignant neoplasm of liver | 1 | CTD_human |
DDX54 | C1136382 | Sclerocystic Ovaries | 1 | CTD_human |