CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ST8SIA4 (CAeditome ID:7903)

Gene summary for ST8SIA4

check button Gene summary
Gene informationGene symbol

ST8SIA4

Gene ID

7903

Gene nameST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
SynonymsPST|PST1|SIAT8D|ST8SIA-IV
Cytomap

5q21.1

Type of geneprotein-coding
DescriptionCMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferaseCMP-N-acetylneuraminate-poly-alpha-2,8-sialyl transferaseSIAT8-DST8 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase 4ST8SiaIValpha-2,8-sialyltransferase 8Dpolysialyltransferase-1sialyltr
Modification date20210518
UniProtAcc

Q92187

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ST8SIA4

GO:0003828

CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase

10766765

ST8SIA4

GO:0001574

CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase

10766765

ST8SIA4

GO:0006486

CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase

10766765

ST8SIA4

GO:0006491

CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase

10766765

ST8SIA4

GO:0009311

CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase

10766765


Top

RNA A-to-I events for ST8SIA4

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000113532.11

check button RNA A-to-I editing events in Cancer.
CAediting_421498(100809215, -), CAediting_421499(100809278, -), CAediting_421500(100809342, -), CAediting_421501(100809398, -), CAediting_421502(100810919, -), CAediting_421503(100810933, -), CAediting_421504(100810988, -), CAediting_421505(100811002, -), CAediting_421506(100811013, -), CAediting_421507(100811029, -), CAediting_421508(100811039, -), CAediting_421509(100811065, -), CAediting_421510(100811100, -), CAediting_421511(100817010, -), CAediting_421512(100817011, -), CAediting_421513(100817080, -), CAediting_421514(100849537, -), CAediting_421515(100849539, -), CAediting_421516(100849547, -), CAediting_421517(100849560, -), CAediting_421518(100849565, -), CAediting_421519(100849576, -), CAediting_421520(100849589, -), CAediting_421521(100849601, -), CAediting_421522(100849615, -), CAediting_421523(100849660, -), CAediting_421524(100849663, -), CAediting_421525(100849667, -), CAediting_421526(100849669, -), CAediting_421527(100849672, -), CAediting_421528(100849679, -), CAediting_421529(100849682, -), CAediting_421530(100849691, -), CAediting_421531(100849718, -), CAediting_421532(100849775, -), CAediting_421533(100849789, -), CAediting_421534(100849793, -), CAediting_421535(100850113, -), CAediting_421536(100850115, -), CAediting_421537(100850992, -), CAediting_421538(100851027, -), CAediting_421539(100851035, -), CAediting_421540(100851036, -), CAediting_421541(100851045, -), CAediting_421542(100851057, -), CAediting_421543(100851080, -), CAediting_421544(100851085, -), CAediting_421545(100851088, -), CAediting_421546(100851097, -), CAediting_421547(100851098, -), CAediting_421548(100851120, -), CAediting_421549(100851124, -), CAediting_421550(100851133, -), CAediting_421551(100851136, -), CAediting_421552(100851137, -), CAediting_421553(100851165, -), CAediting_421554(100851174, -), CAediting_421555(100851179, -), CAediting_421556(100851185, -), CAediting_421557(100851233, -), CAediting_421558(100851234, -), CAediting_421559(100851252, -), CAediting_421560(100852154, -), CAediting_421561(100852156, -), CAediting_421562(100852168, -), CAediting_421563(100852183, -), CAediting_421564(100852193, -), CAediting_421565(100852197, -), CAediting_421566(100852206, -), CAediting_421567(100852214, -), CAediting_421568(100852218, -), CAediting_421569(100852219, -), CAediting_421570(100852224, -), CAediting_421571(100852233, -), CAediting_421572(100852243, -), CAediting_421573(100852250, -), CAediting_421574(100852260, -), CAediting_421575(100852270, -), CAediting_421576(100852289, -), CAediting_421577(100852290, -), CAediting_421578(100852295, -), CAediting_421579(100852297, -), CAediting_421580(100852298, -), CAediting_421581(100852299, -), CAediting_421582(100852300, -), CAediting_421583(100852301, -), CAediting_421584(100852315, -), CAediting_421585(100852323, -), CAediting_421586(100852325, -), CAediting_421587(100852326, -), CAediting_421588(100852349, -), CAediting_421589(100852372, -), CAediting_421590(100852373, -), CAediting_421591(100852388, -), CAediting_421592(100852389, -), CAediting_421593(100852403, -), CAediting_421594(100852411, -), CAediting_421595(100854327, -), CAediting_421596(100854339, -), CAediting_421597(100854340, -), CAediting_421598(100854394, -), CAediting_421599(100854461, -), CAediting_421600(100854520, -), CAediting_421601(100864466, -), CAediting_421602(100864467, -),

Top

RNA editing positional annotations for ST8SIA4 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_421498chr5_100809215_-UTR3
CAediting_421499chr5_100809278_-UTR3
CAediting_421500chr5_100809342_-UTR3
CAediting_421501chr5_100809398_-UTR3
CAediting_421502chr5_100810919_-UTR3
CAediting_421503chr5_100810933_-UTR3
CAediting_421504chr5_100810988_-UTR3
CAediting_421505chr5_100811002_-UTR3
CAediting_421506chr5_100811013_-UTR3
CAediting_421507chr5_100811029_-UTR3
CAediting_421508chr5_100811039_-UTR3
CAediting_421509chr5_100811065_-UTR3
CAediting_421510chr5_100811100_-UTR3
CAediting_421511chr5_100817010_-intronic
CAediting_421512chr5_100817011_-intronic
CAediting_421513chr5_100817080_-intronic
CAediting_421514chr5_100849537_-intronic
CAediting_421515chr5_100849539_-intronic
CAediting_421516chr5_100849547_-intronic
CAediting_421517chr5_100849560_-intronic
CAediting_421518chr5_100849565_-intronic
CAediting_421519chr5_100849576_-intronic
CAediting_421520chr5_100849589_-intronic
CAediting_421521chr5_100849601_-intronic
CAediting_421522chr5_100849615_-intronic
CAediting_421523chr5_100849660_-intronic
CAediting_421524chr5_100849663_-intronic
CAediting_421525chr5_100849667_-intronic
CAediting_421526chr5_100849669_-intronic
CAediting_421527chr5_100849672_-intronic
CAediting_421528chr5_100849679_-intronic
CAediting_421529chr5_100849682_-intronic
CAediting_421530chr5_100849691_-intronic
CAediting_421531chr5_100849718_-intronic
CAediting_421532chr5_100849775_-intronic
CAediting_421533chr5_100849789_-intronic
CAediting_421534chr5_100849793_-intronic
CAediting_421535chr5_100850113_-intronic
CAediting_421536chr5_100850115_-intronic
CAediting_421537chr5_100850992_-intronic
CAediting_421538chr5_100851027_-intronic
CAediting_421539chr5_100851035_-intronic
CAediting_421540chr5_100851036_-intronic
CAediting_421541chr5_100851045_-intronic
CAediting_421542chr5_100851057_-intronic
CAediting_421543chr5_100851080_-intronic
CAediting_421544chr5_100851085_-intronic
CAediting_421545chr5_100851088_-intronic
CAediting_421546chr5_100851097_-intronic
CAediting_421547chr5_100851098_-intronic
CAediting_421548chr5_100851120_-intronic
CAediting_421549chr5_100851124_-intronic
CAediting_421550chr5_100851133_-intronic
CAediting_421551chr5_100851136_-intronic
CAediting_421552chr5_100851137_-intronic
CAediting_421553chr5_100851165_-intronic
CAediting_421554chr5_100851174_-intronic
CAediting_421555chr5_100851179_-intronic
CAediting_421556chr5_100851185_-intronic
CAediting_421557chr5_100851233_-intronic
CAediting_421558chr5_100851234_-intronic
CAediting_421559chr5_100851252_-intronic
CAediting_421560chr5_100852154_-intronic
CAediting_421561chr5_100852156_-intronic
CAediting_421562chr5_100852168_-intronic
CAediting_421563chr5_100852183_-intronic
CAediting_421564chr5_100852193_-intronic
CAediting_421565chr5_100852197_-intronic
CAediting_421566chr5_100852206_-intronic
CAediting_421567chr5_100852214_-intronic
CAediting_421568chr5_100852218_-intronic
CAediting_421569chr5_100852219_-intronic
CAediting_421570chr5_100852224_-intronic
CAediting_421571chr5_100852233_-intronic
CAediting_421572chr5_100852243_-intronic
CAediting_421573chr5_100852250_-intronic
CAediting_421574chr5_100852260_-intronic
CAediting_421575chr5_100852270_-intronic
CAediting_421576chr5_100852289_-intronic
CAediting_421577chr5_100852290_-intronic
CAediting_421578chr5_100852295_-intronic
CAediting_421579chr5_100852297_-intronic
CAediting_421580chr5_100852298_-intronic
CAediting_421581chr5_100852299_-intronic
CAediting_421582chr5_100852300_-intronic
CAediting_421583chr5_100852301_-intronic
CAediting_421584chr5_100852315_-intronic
CAediting_421585chr5_100852323_-intronic
CAediting_421586chr5_100852325_-intronic
CAediting_421587chr5_100852326_-intronic
CAediting_421588chr5_100852349_-intronic
CAediting_421589chr5_100852372_-intronic
CAediting_421590chr5_100852373_-intronic
CAediting_421591chr5_100852388_-intronic
CAediting_421592chr5_100852389_-intronic
CAediting_421593chr5_100852403_-intronic
CAediting_421594chr5_100852411_-intronic
CAediting_421595chr5_100854327_-intronic
CAediting_421596chr5_100854339_-intronic
CAediting_421597chr5_100854340_-intronic
CAediting_421598chr5_100854394_-intronic
CAediting_421599chr5_100854461_-intronic
CAediting_421600chr5_100854520_-intronic
CAediting_421601chr5_100864466_-intronic
CAediting_421602chr5_100864467_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_421498chr5_100809215_-SINEAluAluSx1
CAediting_421499chr5_100809278_-SINEAluAluSx1
CAediting_421500chr5_100809342_-SINEAluAluSx1
CAediting_421501chr5_100809398_-SINEAluAluSx1
CAediting_421502chr5_100810919_-SINEAluAluY
CAediting_421503chr5_100810933_-SINEAluAluY
CAediting_421504chr5_100810988_-SINEAluAluY
CAediting_421505chr5_100811002_-SINEAluAluY
CAediting_421506chr5_100811013_-SINEAluAluY
CAediting_421507chr5_100811029_-SINEAluAluY
CAediting_421508chr5_100811039_-SINEAluAluY
CAediting_421509chr5_100811065_-SINEAluAluY
CAediting_421510chr5_100811100_-SINEAluAluY
CAediting_421511chr5_100817010_-SINEAluAluSg
CAediting_421512chr5_100817011_-SINEAluAluSg
CAediting_421513chr5_100817080_-SINEAluAluSg
CAediting_421514chr5_100849537_-SINEAluAluSx
CAediting_421515chr5_100849539_-SINEAluAluSx
CAediting_421516chr5_100849547_-SINEAluAluSx
CAediting_421517chr5_100849560_-SINEAluAluSx
CAediting_421518chr5_100849565_-SINEAluAluSx
CAediting_421519chr5_100849576_-SINEAluAluSx
CAediting_421520chr5_100849589_-SINEAluAluSx
CAediting_421521chr5_100849601_-SINEAluAluSx
CAediting_421522chr5_100849615_-SINEAluAluSx
CAediting_421523chr5_100849660_-SINEAluAluSx
CAediting_421524chr5_100849663_-SINEAluAluSx
CAediting_421525chr5_100849667_-SINEAluAluSx
CAediting_421526chr5_100849669_-SINEAluAluSx
CAediting_421527chr5_100849672_-SINEAluAluSx
CAediting_421528chr5_100849679_-SINEAluAluSx
CAediting_421529chr5_100849682_-SINEAluAluSx
CAediting_421530chr5_100849691_-SINEAluAluSx
CAediting_421531chr5_100849718_-SINEAluAluSx
CAediting_421532chr5_100849775_-SINEAluAluSx
CAediting_421533chr5_100849789_-SINEAluAluSx
CAediting_421534chr5_100849793_-SINEAluAluSx
CAediting_421535chr5_100850113_-DNATcMar-MarinerMADE1
CAediting_421536chr5_100850115_-DNATcMar-MarinerMADE1
CAediting_421537chr5_100850992_-SINEAluAluSz
CAediting_421538chr5_100851027_-SINEAluAluSz
CAediting_421539chr5_100851035_-SINEAluAluSz
CAediting_421540chr5_100851036_-SINEAluAluSz
CAediting_421541chr5_100851045_-SINEAluAluSz
CAediting_421542chr5_100851057_-SINEAluAluSz
CAediting_421543chr5_100851080_-SINEAluAluSz
CAediting_421544chr5_100851085_-SINEAluAluSz
CAediting_421545chr5_100851088_-SINEAluAluSz
CAediting_421546chr5_100851097_-SINEAluAluSz
CAediting_421547chr5_100851098_-SINEAluAluSz
CAediting_421548chr5_100851120_-SINEAluAluSz
CAediting_421549chr5_100851124_-SINEAluAluSz
CAediting_421550chr5_100851133_-SINEAluAluSz
CAediting_421551chr5_100851136_-SINEAluAluSz
CAediting_421552chr5_100851137_-SINEAluAluSz
CAediting_421553chr5_100851165_-SINEAluAluSz
CAediting_421554chr5_100851174_-SINEAluAluSz
CAediting_421555chr5_100851179_-SINEAluAluSz
CAediting_421556chr5_100851185_-SINEAluAluSz
CAediting_421557chr5_100851233_-SINEAluAluSz
CAediting_421558chr5_100851234_-SINEAluAluSz
CAediting_421559chr5_100851252_-SINEAluAluSz
CAediting_421560chr5_100852154_-SINEAluAluSx
CAediting_421561chr5_100852156_-SINEAluAluSx
CAediting_421562chr5_100852168_-SINEAluAluSx
CAediting_421563chr5_100852183_-SINEAluAluSx
CAediting_421564chr5_100852193_-SINEAluAluSx
CAediting_421565chr5_100852197_-SINEAluAluSx
CAediting_421566chr5_100852206_-SINEAluAluSx
CAediting_421567chr5_100852214_-SINEAluAluSx
CAediting_421568chr5_100852218_-SINEAluAluSx
CAediting_421569chr5_100852219_-SINEAluAluSx
CAediting_421570chr5_100852224_-SINEAluAluSx
CAediting_421571chr5_100852233_-SINEAluAluSx
CAediting_421572chr5_100852243_-SINEAluAluSx
CAediting_421573chr5_100852250_-SINEAluAluSx
CAediting_421574chr5_100852260_-SINEAluAluSx
CAediting_421575chr5_100852270_-SINEAluAluSx
CAediting_421576chr5_100852289_-SINEAluAluSx
CAediting_421577chr5_100852290_-SINEAluAluSx
CAediting_421578chr5_100852295_-SINEAluAluSx
CAediting_421579chr5_100852297_-SINEAluAluSx
CAediting_421580chr5_100852298_-SINEAluAluSx
CAediting_421581chr5_100852299_-SINEAluAluSx
CAediting_421582chr5_100852300_-SINEAluAluSx
CAediting_421583chr5_100852301_-SINEAluAluSx
CAediting_421584chr5_100852315_-SINEAluAluSx
CAediting_421585chr5_100852323_-SINEAluAluSx
CAediting_421586chr5_100852325_-SINEAluAluSx
CAediting_421587chr5_100852326_-SINEAluAluSx
CAediting_421588chr5_100852349_-SINEAluAluSx
CAediting_421589chr5_100852372_-SINEAluAluSx
CAediting_421590chr5_100852373_-SINEAluAluSx
CAediting_421591chr5_100852388_-SINEAluAluSx
CAediting_421592chr5_100852389_-SINEAluAluSx
CAediting_421593chr5_100852403_-SINEAluAluSx
CAediting_421594chr5_100852411_-SINEAluAluSx
CAediting_421595chr5_100854327_-SINEAluAluY
CAediting_421596chr5_100854339_-SINEAluAluY
CAediting_421597chr5_100854340_-SINEAluAluY
CAediting_421598chr5_100854394_-SINEAluAluY
CAediting_421599chr5_100854461_-SINEAluAluY
CAediting_421600chr5_100854520_-SINEAluAluY
CAediting_421601chr5_100864466_-SINEAluAluY
CAediting_421602chr5_100864467_-SINEAluAluY

Top

RNA A-to-I editing events in the alternative splicing sites for ST8SIA4

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000113532.11.ST8SIA4.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000113532.11.ST8SIA4.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ST8SIA4

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for ST8SIA4

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for ST8SIA4

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1399425chr20_1392958_-ENSG00000113532.11ENST00000523381hsa-miR-6869-5p1009003981009004058mer-1a100900398100900419143-18.88

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for ST8SIA4

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000231461.8protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_421498ENST00000231461.8chr5_100809215_--1614.04-1609.74-1642.44
CAediting_421499ENST00000231461.8chr5_100809278_--1609.84-1609.74-1642.44
CAediting_421500ENST00000231461.8chr5_100809342_--1609.74-1609.74-1642.44
CAediting_421501ENST00000231461.8chr5_100809398_--1613.84-1609.74-1642.44
CAediting_421502ENST00000231461.8chr5_100810919_--1611.64-1609.74-1642.44
CAediting_421503ENST00000231461.8chr5_100810933_--1616.34-1609.74-1642.44
CAediting_421504ENST00000231461.8chr5_100810988_--1615.64-1609.74-1642.44
CAediting_421505ENST00000231461.8chr5_100811002_--1611.14-1609.74-1642.44
CAediting_421506ENST00000231461.8chr5_100811013_--1611.34-1609.74-1642.44
CAediting_421507ENST00000231461.8chr5_100811029_--1610.84-1609.74-1642.44
CAediting_421508ENST00000231461.8chr5_100811039_--1612.70-1609.74-1642.44
CAediting_421509ENST00000231461.8chr5_100811065_--1612.44-1609.74-1642.44
CAediting_421510ENST00000231461.8chr5_100811100_--1610.74-1609.74-1642.44

Top

Relation with ADAR for ST8SIA4

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

Top

Relation with cancer stages for ST8SIA4

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

Top

Relation with survival for ST8SIA4

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for ST8SIA4

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for ST8SIA4

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource