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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ZNF232 (CAeditome ID:7775)

Gene summary for ZNF232

check button Gene summary
Gene informationGene symbol

ZNF232

Gene ID

7775

Gene namezinc finger protein 232
SynonymsZSCAN11
Cytomap

17p13.2

Type of geneprotein-coding
Descriptionzinc finger protein 232zinc finger and SCAN domain-containing protein 11
Modification date20210518
UniProtAcc

Q9UNY5

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ZNF232

GO:0005654

Zinc finger protein 232

0000052

ZNF232

GO:0005829

Zinc finger protein 232

0000052

ZNF232

GO:0043231

Zinc finger protein 232

0000052


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RNA A-to-I events for ZNF232

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000167840.12

check button RNA A-to-I editing events in Cancer.
CAediting_1158644(5106063, -), CAediting_1158645(5106097, -), CAediting_1158646(5106099, -), CAediting_1158647(5107123, -), CAediting_1158648(5107130, -), CAediting_1158649(5107132, -), CAediting_1158650(5107144, -), CAediting_1158651(5107145, -), CAediting_1158652(5107146, -), CAediting_1158653(5107167, -), CAediting_1158654(5107195, -), CAediting_1158655(5107207, -), CAediting_1158656(5107221, -), CAediting_1158657(5107224, -), CAediting_1158658(5107240, -), CAediting_1158659(5107264, -), CAediting_1158660(5107276, -), CAediting_1158661(5107288, -), CAediting_1158662(5107319, -), CAediting_1158663(5107325, -), CAediting_1158664(5107331, -), CAediting_1158665(5107350, -), CAediting_1158666(5107593, -), CAediting_1158667(5107601, -), CAediting_1158668(5107607, -), CAediting_1158669(5107611, -), CAediting_1158670(5107624, -), CAediting_1158671(5107635, -), CAediting_1158672(5107644, -), CAediting_1158673(5107654, -), CAediting_1158674(5107660, -), CAediting_1158675(5107671, -), CAediting_1158676(5107676, -), CAediting_1158677(5107677, -), CAediting_1158678(5107700, -), CAediting_1158679(5107705, -), CAediting_1158680(5107711, -), CAediting_1158681(5107712, -), CAediting_1158682(5107713, -), CAediting_1158683(5107714, -), CAediting_1158684(5107715, -), CAediting_1158685(5107718, -), CAediting_1158686(5107729, -), CAediting_1158687(5107739, -), CAediting_1158688(5107754, -), CAediting_1158689(5107755, -), CAediting_1158690(5107760, -), CAediting_1158691(5107781, -), CAediting_1158692(5107785, -), CAediting_1158693(5107802, -), CAediting_1158694(5107807, -), CAediting_1158695(5107816, -), CAediting_1158696(5115386, -), CAediting_1158697(5115439, -), CAediting_1158698(5115504, -), CAediting_1158699(5115524, -),

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RNA editing positional annotations for ZNF232 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_1158644chr17_5106063_-nonsynonymous SNVENST00000250076.6c.A1096Gp.K366ED.D
CAediting_1158644chr17_5106063_-nonsynonymous SNVENST00000575898.4c.A1069Gp.K357ED.D
CAediting_1158646chr17_5106099_-nonsynonymous SNVENST00000250076.6c.A1060Gp.T354AD.D
CAediting_1158646chr17_5106099_-nonsynonymous SNVENST00000575898.4c.A1033Gp.T345AD.D

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1158644chr17_5106063_-exonic
CAediting_1158645chr17_5106097_-exonic
CAediting_1158646chr17_5106099_-exonic
CAediting_1158647chr17_5107123_-ncRNA_intronic
CAediting_1158648chr17_5107130_-ncRNA_intronic
CAediting_1158649chr17_5107132_-ncRNA_intronic
CAediting_1158650chr17_5107144_-ncRNA_intronic
CAediting_1158651chr17_5107145_-ncRNA_intronic
CAediting_1158652chr17_5107146_-ncRNA_intronic
CAediting_1158653chr17_5107167_-ncRNA_intronic
CAediting_1158654chr17_5107195_-ncRNA_intronic
CAediting_1158655chr17_5107207_-ncRNA_intronic
CAediting_1158656chr17_5107221_-ncRNA_intronic
CAediting_1158657chr17_5107224_-ncRNA_intronic
CAediting_1158658chr17_5107240_-ncRNA_intronic
CAediting_1158659chr17_5107264_-ncRNA_intronic
CAediting_1158660chr17_5107276_-ncRNA_intronic
CAediting_1158661chr17_5107288_-ncRNA_intronic
CAediting_1158662chr17_5107319_-ncRNA_intronic
CAediting_1158663chr17_5107325_-ncRNA_intronic
CAediting_1158664chr17_5107331_-ncRNA_intronic
CAediting_1158665chr17_5107350_-ncRNA_intronic
CAediting_1158666chr17_5107593_-ncRNA_intronic
CAediting_1158667chr17_5107601_-ncRNA_intronic
CAediting_1158668chr17_5107607_-ncRNA_intronic
CAediting_1158669chr17_5107611_-ncRNA_intronic
CAediting_1158670chr17_5107624_-ncRNA_intronic
CAediting_1158671chr17_5107635_-ncRNA_intronic
CAediting_1158672chr17_5107644_-ncRNA_intronic
CAediting_1158673chr17_5107654_-ncRNA_intronic
CAediting_1158674chr17_5107660_-ncRNA_intronic
CAediting_1158675chr17_5107671_-ncRNA_intronic
CAediting_1158676chr17_5107676_-ncRNA_intronic
CAediting_1158677chr17_5107677_-ncRNA_intronic
CAediting_1158678chr17_5107700_-ncRNA_intronic
CAediting_1158679chr17_5107705_-ncRNA_intronic
CAediting_1158680chr17_5107711_-ncRNA_intronic
CAediting_1158681chr17_5107712_-ncRNA_intronic
CAediting_1158682chr17_5107713_-ncRNA_intronic
CAediting_1158683chr17_5107714_-ncRNA_intronic
CAediting_1158684chr17_5107715_-ncRNA_intronic
CAediting_1158685chr17_5107718_-ncRNA_intronic
CAediting_1158686chr17_5107729_-ncRNA_intronic
CAediting_1158687chr17_5107739_-ncRNA_intronic
CAediting_1158688chr17_5107754_-ncRNA_intronic
CAediting_1158689chr17_5107755_-ncRNA_intronic
CAediting_1158690chr17_5107760_-ncRNA_intronic
CAediting_1158691chr17_5107781_-ncRNA_intronic
CAediting_1158692chr17_5107785_-ncRNA_intronic
CAediting_1158693chr17_5107802_-ncRNA_intronic
CAediting_1158694chr17_5107807_-ncRNA_intronic
CAediting_1158695chr17_5107816_-ncRNA_intronic
CAediting_1158696chr17_5115386_-intronic
CAediting_1158697chr17_5115439_-intronic
CAediting_1158698chr17_5115504_-intronic
CAediting_1158699chr17_5115524_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1158647chr17_5107123_-SINEAluAluY
CAediting_1158648chr17_5107130_-SINEAluAluY
CAediting_1158649chr17_5107132_-SINEAluAluY
CAediting_1158650chr17_5107144_-SINEAluAluY
CAediting_1158651chr17_5107145_-SINEAluAluY
CAediting_1158652chr17_5107146_-SINEAluAluY
CAediting_1158653chr17_5107167_-SINEAluAluY
CAediting_1158654chr17_5107195_-SINEAluAluY
CAediting_1158655chr17_5107207_-SINEAluAluY
CAediting_1158656chr17_5107221_-SINEAluAluY
CAediting_1158657chr17_5107224_-SINEAluAluY
CAediting_1158658chr17_5107240_-SINEAluAluY
CAediting_1158659chr17_5107264_-SINEAluAluY
CAediting_1158660chr17_5107276_-SINEAluAluY
CAediting_1158661chr17_5107288_-SINEAluAluY
CAediting_1158662chr17_5107319_-SINEAluAluY
CAediting_1158663chr17_5107325_-SINEAluAluY
CAediting_1158664chr17_5107331_-SINEAluAluY
CAediting_1158665chr17_5107350_-SINEAluAluY
CAediting_1158666chr17_5107593_-SINEAluAluSz
CAediting_1158667chr17_5107601_-SINEAluAluSz
CAediting_1158668chr17_5107607_-SINEAluAluSz
CAediting_1158669chr17_5107611_-SINEAluAluSz
CAediting_1158670chr17_5107624_-SINEAluAluSz
CAediting_1158671chr17_5107635_-SINEAluAluSz
CAediting_1158672chr17_5107644_-SINEAluAluSz
CAediting_1158673chr17_5107654_-SINEAluAluSz
CAediting_1158674chr17_5107660_-SINEAluAluSz
CAediting_1158675chr17_5107671_-SINEAluAluSz
CAediting_1158676chr17_5107676_-SINEAluAluSz
CAediting_1158677chr17_5107677_-SINEAluAluSz
CAediting_1158678chr17_5107700_-SINEAluAluSz
CAediting_1158679chr17_5107705_-SINEAluAluSz
CAediting_1158680chr17_5107711_-SINEAluAluSz
CAediting_1158681chr17_5107712_-SINEAluAluSz
CAediting_1158682chr17_5107713_-SINEAluAluSz
CAediting_1158683chr17_5107714_-SINEAluAluSz
CAediting_1158684chr17_5107715_-SINEAluAluSz
CAediting_1158685chr17_5107718_-SINEAluAluSz
CAediting_1158686chr17_5107729_-SINEAluAluSz
CAediting_1158687chr17_5107739_-SINEAluAluSz
CAediting_1158688chr17_5107754_-SINEAluAluSz
CAediting_1158689chr17_5107755_-SINEAluAluSz
CAediting_1158690chr17_5107760_-SINEAluAluSz
CAediting_1158691chr17_5107781_-SINEAluAluSz
CAediting_1158692chr17_5107785_-SINEAluAluSz
CAediting_1158693chr17_5107802_-SINEAluAluSz
CAediting_1158694chr17_5107807_-SINEAluAluSz
CAediting_1158695chr17_5107816_-SINEAluAluSz
CAediting_1158696chr17_5115386_-SINEAluAluSx1
CAediting_1158697chr17_5115439_-SINEAluAluSx1
CAediting_1158698chr17_5115504_-SINEAluAluSx1
CAediting_1158699chr17_5115524_-SINEAluAluSx1

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RNA A-to-I editing events in the alternative splicing sites for ZNF232

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000167840.12.ZNF232.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000167840.12.ZNF232.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZNF232

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for ZNF232

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for ZNF232

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1158644chr17_5106063_-ENSG00000167840.12ENST00000573015hsa-miR-6778-3p510605951060657mer-m851060585106077162.00-22.68
CAediting_1158644chr17_5106063_-ENSG00000167840.12ENST00000570486hsa-miR-6778-3p510605951060657mer-m851060585106077162.00-22.68

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1158644chr17_5106063_-ENSG00000167840.12ENST00000573015hsa-miR-188-3p510606251060698mer-1a51060625106084154-17.51
CAediting_1158644chr17_5106063_-ENSG00000167840.12ENST00000573015hsa-miR-4297510605951060657mer-m851060585106073145-13.01
CAediting_1158644chr17_5106063_-ENSG00000167840.12ENST00000573015hsa-miR-5581-5p510605951060657mer-m851060585106079141-12.91
CAediting_1158644chr17_5106063_-ENSG00000167840.12ENST00000570486hsa-miR-188-3p510606251060698mer-1a51060625106084154-17.51
CAediting_1158644chr17_5106063_-ENSG00000167840.12ENST00000570486hsa-miR-4297510605951060657mer-m851060585106073145-13.01
CAediting_1158644chr17_5106063_-ENSG00000167840.12ENST00000570486hsa-miR-5581-5p510605951060657mer-m851060585106079141-12.91

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000167840.12ENST00000570486hsa-miR-605-3p510924151092477mer-m851092405109260147-17.53
CAediting_228905chr2_188297554_+ENSG00000167840.12ENST00000573015hsa-miR-561-3p510977951097857mer-m851097785109799156-15.35
CAediting_1368054chr19_46709310_-ENSG00000167840.12ENST00000573015hsa-miR-320e510896051089667mer-m851089595108976146-18
CAediting_1368054chr19_46709310_-ENSG00000167840.12ENST00000570486hsa-miR-320e510896051089667mer-m851089595108976146-18
CAediting_228905chr2_188297554_+ENSG00000167840.12ENST00000570486hsa-miR-561-3p510977951097857mer-m851097785109799156-15.35

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_580943chr7_100356700_+ENSG00000167840.12ENST00000573015hsa-miR-6840-3p510947751094837mer-m851094765109496150-18.22
CAediting_442554chr5_154685830_+ENSG00000167840.12ENST00000570486hsa-miR-1303510917151091788mer-1a51091715109190142-15.62
CAediting_580943chr7_100356700_+ENSG00000167840.12ENST00000570486hsa-miR-6840-3p510947751094837mer-m851094765109496150-18.22
CAediting_580943chr7_100356700_+ENSG00000167840.12ENST00000571076hsa-miR-6840-3p510947751094837mer-m851094765109496150-18.22

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ZNF232

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for ZNF232

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LGGCAediting_1158650chr17_5107144_-0.03587442816726580.220301845801765....
GBMCAediting_1158650chr17_5107144_-0.04694040412142350.230195515614929....

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Relation with cancer stages for ZNF232

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for ZNF232

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for ZNF232

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ZNF232

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource