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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ZSCAN9 (CAeditome ID:7746)

Gene summary for ZSCAN9

check button Gene summary
Gene informationGene symbol

ZSCAN9

Gene ID

7746

Gene namezinc finger and SCAN domain containing 9
SynonymsPRD51|ZNF193
Cytomap

6p22.1

Type of geneprotein-coding
Descriptionzinc finger and SCAN domain-containing protein 9cell proliferation-inducing gene 12 proteincell proliferation-inducing protein 12zinc finger protein 193
Modification date20210518
UniProtAcc

O15535

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ZSCAN9

GO:1990837

Zinc finger and SCAN domain-containing protein 9

28473536


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RNA A-to-I events for ZSCAN9

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000137185.10

check button RNA A-to-I editing events in Cancer.
CAediting_466726(28229938, +), CAediting_466727(28229975, +), CAediting_466728(28229984, +), CAediting_466729(28229987, +), CAediting_466730(28229997, +), CAediting_466731(28229999, +), CAediting_466732(28230039, +), CAediting_466733(28230042, +), CAediting_466734(28230131, +), CAediting_466735(28231491, +), CAediting_466736(28231492, +), CAediting_466737(28231513, +), CAediting_466738(28231558, +), CAediting_466739(28231567, +), CAediting_466740(28231568, +), CAediting_466741(28231603, +), CAediting_466742(28231611, +), CAediting_466743(28231633, +), CAediting_466744(28231639, +), CAediting_466745(28231665, +), CAediting_466746(28231666, +), CAediting_466747(28231674, +), CAediting_466748(28231675, +), CAediting_466749(28231683, +), CAediting_466750(28231688, +), CAediting_466751(28231704, +), CAediting_466752(28231710, +), CAediting_466753(28232036, +), CAediting_466754(28232070, +), CAediting_466755(28232076, +), CAediting_466756(28232077, +), CAediting_466757(28232085, +), CAediting_466758(28232117, +), CAediting_466759(28232122, +), CAediting_466760(28232130, +), CAediting_466761(28232131, +), CAediting_466762(28232146, +), CAediting_466763(28232154, +), CAediting_466764(28232155, +), CAediting_466765(28232156, +), CAediting_466766(28232170, +), CAediting_466767(28232171, +), CAediting_466768(28232174, +), CAediting_466769(28232176, +), CAediting_466770(28232179, +), CAediting_466771(28232180, +), CAediting_466772(28232181, +), CAediting_466773(28232184, +), CAediting_466774(28232210, +), CAediting_466775(28232217, +), CAediting_466776(28232220, +), CAediting_466777(28232227, +), CAediting_466778(28232229, +), CAediting_466779(28232233, +), CAediting_466780(28232237, +), CAediting_466781(28232242, +), CAediting_466782(28232243, +), CAediting_466783(28232251, +), CAediting_466784(28232252, +), CAediting_466785(28232259, +), CAediting_466786(28232260, +), CAediting_466787(28232283, +), CAediting_466788(28232286, +), CAediting_466789(28232301, +), CAediting_466790(28232315, +),

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RNA editing positional annotations for ZSCAN9 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_466726chr6_28229938_+intronic
CAediting_466727chr6_28229975_+intronic
CAediting_466728chr6_28229984_+intronic
CAediting_466729chr6_28229987_+intronic
CAediting_466730chr6_28229997_+intronic
CAediting_466731chr6_28229999_+intronic
CAediting_466732chr6_28230039_+intronic
CAediting_466733chr6_28230042_+intronic
CAediting_466734chr6_28230131_+intronic
CAediting_466735chr6_28231491_+intronic
CAediting_466736chr6_28231492_+intronic
CAediting_466737chr6_28231513_+intronic
CAediting_466738chr6_28231558_+intronic
CAediting_466739chr6_28231567_+intronic
CAediting_466740chr6_28231568_+intronic
CAediting_466741chr6_28231603_+intronic
CAediting_466742chr6_28231611_+intronic
CAediting_466743chr6_28231633_+intronic
CAediting_466744chr6_28231639_+intronic
CAediting_466745chr6_28231665_+intronic
CAediting_466746chr6_28231666_+intronic
CAediting_466747chr6_28231674_+intronic
CAediting_466748chr6_28231675_+intronic
CAediting_466749chr6_28231683_+intronic
CAediting_466750chr6_28231688_+intronic
CAediting_466751chr6_28231704_+intronic
CAediting_466752chr6_28231710_+intronic
CAediting_466753chr6_28232036_+intronic
CAediting_466754chr6_28232070_+intronic
CAediting_466755chr6_28232076_+intronic
CAediting_466756chr6_28232077_+intronic
CAediting_466757chr6_28232085_+intronic
CAediting_466758chr6_28232117_+intronic
CAediting_466759chr6_28232122_+intronic
CAediting_466760chr6_28232130_+intronic
CAediting_466761chr6_28232131_+intronic
CAediting_466762chr6_28232146_+intronic
CAediting_466763chr6_28232154_+intronic
CAediting_466764chr6_28232155_+intronic
CAediting_466765chr6_28232156_+intronic
CAediting_466766chr6_28232170_+intronic
CAediting_466767chr6_28232171_+intronic
CAediting_466768chr6_28232174_+intronic
CAediting_466769chr6_28232176_+intronic
CAediting_466770chr6_28232179_+intronic
CAediting_466771chr6_28232180_+intronic
CAediting_466772chr6_28232181_+intronic
CAediting_466773chr6_28232184_+intronic
CAediting_466774chr6_28232210_+intronic
CAediting_466775chr6_28232217_+intronic
CAediting_466776chr6_28232220_+intronic
CAediting_466777chr6_28232227_+intronic
CAediting_466778chr6_28232229_+intronic
CAediting_466779chr6_28232233_+intronic
CAediting_466780chr6_28232237_+intronic
CAediting_466781chr6_28232242_+intronic
CAediting_466782chr6_28232243_+intronic
CAediting_466783chr6_28232251_+intronic
CAediting_466784chr6_28232252_+intronic
CAediting_466785chr6_28232259_+intronic
CAediting_466786chr6_28232260_+intronic
CAediting_466787chr6_28232283_+intronic
CAediting_466788chr6_28232286_+intronic
CAediting_466789chr6_28232301_+intronic
CAediting_466790chr6_28232315_+intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_466726chr6_28229938_+SINEAluAluY
CAediting_466727chr6_28229975_+SINEAluAluY
CAediting_466728chr6_28229984_+SINEAluAluY
CAediting_466729chr6_28229987_+SINEAluAluY
CAediting_466730chr6_28229997_+SINEAluAluY
CAediting_466731chr6_28229999_+SINEAluAluY
CAediting_466732chr6_28230039_+SINEAluAluY
CAediting_466733chr6_28230042_+SINEAluAluY
CAediting_466734chr6_28230131_+SINEAluAluY
CAediting_466735chr6_28231491_+SINEAluAluSx3
CAediting_466736chr6_28231492_+SINEAluAluSx3
CAediting_466737chr6_28231513_+SINEAluAluSx3
CAediting_466738chr6_28231558_+SINEAluAluSx3
CAediting_466739chr6_28231567_+SINEAluAluSx3
CAediting_466740chr6_28231568_+SINEAluAluSx3
CAediting_466741chr6_28231603_+SINEAluAluSx3
CAediting_466742chr6_28231611_+SINEAluAluSx3
CAediting_466743chr6_28231633_+SINEAluAluSx3
CAediting_466744chr6_28231639_+SINEAluAluSx3
CAediting_466745chr6_28231665_+SINEAluAluSx3
CAediting_466746chr6_28231666_+SINEAluAluSx3
CAediting_466747chr6_28231674_+SINEAluAluSx3
CAediting_466748chr6_28231675_+SINEAluAluSx3
CAediting_466749chr6_28231683_+SINEAluAluSx3
CAediting_466750chr6_28231688_+SINEAluAluSx3
CAediting_466751chr6_28231704_+SINEAluAluSx3
CAediting_466752chr6_28231710_+SINEAluAluSx3
CAediting_466754chr6_28232070_+SINEAluAluSx
CAediting_466755chr6_28232076_+SINEAluAluSx
CAediting_466756chr6_28232077_+SINEAluAluSx
CAediting_466757chr6_28232085_+SINEAluAluSx
CAediting_466758chr6_28232117_+SINEAluAluSx
CAediting_466759chr6_28232122_+SINEAluAluSx
CAediting_466760chr6_28232130_+SINEAluAluSx
CAediting_466761chr6_28232131_+SINEAluAluSx
CAediting_466762chr6_28232146_+SINEAluAluSx
CAediting_466763chr6_28232154_+SINEAluAluSx
CAediting_466764chr6_28232155_+SINEAluAluSx
CAediting_466765chr6_28232156_+SINEAluAluSx
CAediting_466766chr6_28232170_+SINEAluAluSx
CAediting_466767chr6_28232171_+SINEAluAluSx
CAediting_466768chr6_28232174_+SINEAluAluSx
CAediting_466769chr6_28232176_+SINEAluAluSx
CAediting_466770chr6_28232179_+SINEAluAluSx
CAediting_466771chr6_28232180_+SINEAluAluSx
CAediting_466772chr6_28232181_+SINEAluAluSx
CAediting_466773chr6_28232184_+SINEAluAluSx
CAediting_466774chr6_28232210_+SINEAluAluSx
CAediting_466775chr6_28232217_+SINEAluAluSx
CAediting_466776chr6_28232220_+SINEAluAluSx
CAediting_466777chr6_28232227_+SINEAluAluSx
CAediting_466778chr6_28232229_+SINEAluAluSx
CAediting_466779chr6_28232233_+SINEAluAluSx
CAediting_466780chr6_28232237_+SINEAluAluSx
CAediting_466781chr6_28232242_+SINEAluAluSx
CAediting_466782chr6_28232243_+SINEAluAluSx
CAediting_466783chr6_28232251_+SINEAluAluSx
CAediting_466784chr6_28232252_+SINEAluAluSx
CAediting_466785chr6_28232259_+SINEAluAluSx
CAediting_466786chr6_28232260_+SINEAluAluSx
CAediting_466787chr6_28232283_+SINEAluAluSx
CAediting_466788chr6_28232286_+SINEAluAluSx
CAediting_466789chr6_28232301_+SINEAluAluSx
CAediting_466790chr6_28232315_+SINEAluAluSx

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RNA A-to-I editing events in the alternative splicing sites for ZSCAN9

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000137185.10.ZSCAN9.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000137185.10.ZSCAN9.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZSCAN9

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
BLCA.CAediting_466762.ENSG00000137185.ZSCAN9.png
Soverview
SKCM.CAediting_466774.ENSG00000137185.ZSCAN9.png
Soverview

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Protein coding region RNA A-to-I editings for ZSCAN9

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for ZSCAN9

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000137185.10ENST00000531981hsa-miR-200b-3p28227845282278517mer-m82822783128227852143-14.56
CAediting_748296chr10_51299626_+ENSG00000137185.10ENST00000527436hsa-miR-605-3p28228977282289837mer-m82822896328228984147-16.3
CAediting_688080chr9_63819626_+ENSG00000137185.10ENST00000527436hsa-miR-4477b28228533282285397mer-m82822852028228540143-10.02
CAediting_414656chr5_72878640_+ENSG00000137185.10ENST00000531981hsa-miR-4804-3p28227879282278868mer-1a2822786628227886145-17.28
CAediting_1229413chr17_67471544_+ENSG00000137185.10ENST00000527436hsa-miR-548aa28228356282283627mer-m82822833928228363145-12.79
CAediting_396018chr5_1062918_-ENSG00000137185.10ENST00000527436hsa-miR-463528228534282285407mer-m82822852128228541140-13.45
CAediting_1524209chrX_134546392_-ENSG00000137185.10ENST00000527436hsa-miR-503-5p28228255282282617mer-m82822824028228262147-18.38

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1054808chr15_66496985_-ENSG00000137185.10ENST00000527436hsa-miR-451228228539282285468mer-1a2822852528228546140-12.69
CAediting_396018chr5_1062918_-ENSG00000137185.10ENST00000527436hsa-miR-463528228115282281217mer-m82822810228228122150-15.55

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ZSCAN9

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for ZSCAN9

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_466754chr6_28232070_+0.01345602290583430.218806306464123....
LUADCAediting_466754chr6_28232070_+0.04967517703030160.270998027607048....
BRCACAediting_466755chr6_28232076_+0.008205496843478370.30114659241021....
BRCACAediting_466783chr6_28232251_+0.0231310916918210.154150941517742....

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Relation with cancer stages for ZSCAN9

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_466784chr6_28232252_+0.01009335828233620.253672158715951
BRCApathologic_stageCAediting_466783chr6_28232251_+0.02636035369866830.151823023169947
SKCMpathologic_stageCAediting_466784chr6_28232252_+0.0315782870353656-0.295697916735619

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Relation with survival for ZSCAN9

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for ZSCAN9

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ZSCAN9

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource