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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: VEZF1 (CAeditome ID:7716) |
Gene summary for VEZF1 |
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Gene information | Gene symbol | VEZF1 | Gene ID | 7716 |
Gene name | vascular endothelial zinc finger 1 | |
Synonyms | DB1|ZNF161 | |
Cytomap | 17q22 | |
Type of gene | protein-coding | |
Description | vascular endothelial zinc finger 1putative transcription factor DB1zinc finger protein 161 | |
Modification date | 20210518 | |
UniProtAcc | Q14119 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
VEZF1 | GO:0000977 | Vascular endothelial zinc finger 1 | 11504723 |
VEZF1 | GO:0001228 | Vascular endothelial zinc finger 1 | 11504723 |
VEZF1 | GO:0045944 | Vascular endothelial zinc finger 1 | 11504723 |
VEZF1 | GO:0005654 | Vascular endothelial zinc finger 1 | 0000052 |
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RNA A-to-I events for VEZF1 |
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CAediting_1216518(57972412, -), CAediting_1216519(57972462, -), CAediting_1216520(57972464, -), CAediting_1216521(57975871, -), CAediting_1216522(57975913, -), CAediting_1216523(57975914, -), CAediting_1216524(57975915, -), CAediting_1216525(57975931, -), CAediting_1216526(57975937, -), CAediting_1216527(57975952, -), CAediting_1216528(57975963, -), CAediting_1216529(57975966, -), CAediting_1216530(57975967, -), CAediting_1216531(57975969, -), CAediting_1216532(57977219, -), CAediting_1216533(57977232, -), CAediting_1216534(57977237, -), CAediting_1216535(57977255, -), CAediting_1216536(57977340, -), CAediting_1216537(57977386, -), CAediting_1216538(57977406, -), CAediting_1216539(57977602, -), CAediting_1216540(57977958, -), CAediting_1216541(57977968, -), CAediting_1216542(57978006, -), CAediting_1216543(57978081, -), CAediting_1216544(57978087, -), CAediting_1216545(57978103, -), |
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RNA editing positional annotations for VEZF1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1216518 | chr17_57972412_- | UTR3 |
CAediting_1216519 | chr17_57972462_- | UTR3 |
CAediting_1216520 | chr17_57972464_- | UTR3 |
CAediting_1216521 | chr17_57975871_- | intronic |
CAediting_1216522 | chr17_57975913_- | intronic |
CAediting_1216523 | chr17_57975914_- | intronic |
CAediting_1216524 | chr17_57975915_- | intronic |
CAediting_1216525 | chr17_57975931_- | intronic |
CAediting_1216526 | chr17_57975937_- | intronic |
CAediting_1216527 | chr17_57975952_- | intronic |
CAediting_1216528 | chr17_57975963_- | intronic |
CAediting_1216529 | chr17_57975966_- | intronic |
CAediting_1216530 | chr17_57975967_- | intronic |
CAediting_1216531 | chr17_57975969_- | intronic |
CAediting_1216532 | chr17_57977219_- | intronic |
CAediting_1216533 | chr17_57977232_- | intronic |
CAediting_1216534 | chr17_57977237_- | intronic |
CAediting_1216535 | chr17_57977255_- | intronic |
CAediting_1216536 | chr17_57977340_- | intronic |
CAediting_1216537 | chr17_57977386_- | intronic |
CAediting_1216538 | chr17_57977406_- | intronic |
CAediting_1216539 | chr17_57977602_- | intronic |
CAediting_1216540 | chr17_57977958_- | intronic |
CAediting_1216541 | chr17_57977968_- | intronic |
CAediting_1216542 | chr17_57978006_- | intronic |
CAediting_1216543 | chr17_57978081_- | intronic |
CAediting_1216544 | chr17_57978087_- | intronic |
CAediting_1216545 | chr17_57978103_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1216521 | chr17_57975871_- | SINE | Alu | AluJo |
CAediting_1216522 | chr17_57975913_- | SINE | Alu | AluJo |
CAediting_1216523 | chr17_57975914_- | SINE | Alu | AluJo |
CAediting_1216524 | chr17_57975915_- | SINE | Alu | AluJo |
CAediting_1216525 | chr17_57975931_- | SINE | Alu | AluJo |
CAediting_1216526 | chr17_57975937_- | SINE | Alu | AluJo |
CAediting_1216527 | chr17_57975952_- | SINE | Alu | AluJo |
CAediting_1216528 | chr17_57975963_- | SINE | Alu | AluJo |
CAediting_1216529 | chr17_57975966_- | SINE | Alu | AluJo |
CAediting_1216530 | chr17_57975967_- | SINE | Alu | AluJo |
CAediting_1216531 | chr17_57975969_- | SINE | Alu | AluJo |
CAediting_1216532 | chr17_57977219_- | SINE | Alu | AluJr |
CAediting_1216533 | chr17_57977232_- | SINE | Alu | AluJr |
CAediting_1216534 | chr17_57977237_- | SINE | Alu | AluJr |
CAediting_1216535 | chr17_57977255_- | SINE | Alu | AluJr |
CAediting_1216536 | chr17_57977340_- | SINE | Alu | AluJr |
CAediting_1216537 | chr17_57977386_- | SINE | Alu | AluJr |
CAediting_1216538 | chr17_57977406_- | SINE | Alu | AluJr |
CAediting_1216539 | chr17_57977602_- | SINE | Alu | AluSp |
CAediting_1216540 | chr17_57977958_- | SINE | Alu | AluSz6 |
CAediting_1216541 | chr17_57977968_- | SINE | Alu | AluSz6 |
CAediting_1216542 | chr17_57978006_- | SINE | Alu | AluSz6 |
CAediting_1216543 | chr17_57978081_- | SINE | Alu | AluSz6 |
CAediting_1216544 | chr17_57978087_- | SINE | Alu | AluSz6 |
CAediting_1216545 | chr17_57978103_- | SINE | Alu | AluSz6 |
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RNA A-to-I editing events in the alternative splicing sites for VEZF1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for VEZF1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for VEZF1 |
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The effects of the RNA editing to the miRNA binding sites for VEZF1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1216519 | chr17_57972462_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-4297 | 57972460 | 57972466 | 7mer-m8 | 57972459 | 57972474 | 141.00 | -14.70 |
CAediting_1216519 | chr17_57972462_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-5581-5p | 57972460 | 57972466 | 7mer-m8 | 57972459 | 57972480 | 140.00 | -17.26 |
CAediting_1216520 | chr17_57972464_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-6815-3p | 57972459 | 57972464 | 6mer | 57972458 | 57972478 | 151.00 | -23.19 |
CAediting_1216518 | chr17_57972412_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-1204 | 57972412 | 57972418 | 7mer-m8 | 57972411 | 57972434 | 154.00 | -27.00 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1216519 | chr17_57972462_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-4446-5p | 57972462 | 57972468 | 7mer-m8 | 57972461 | 57972484 | 153 | -17.19 |
CAediting_1216520 | chr17_57972464_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-4446-5p | 57972462 | 57972468 | 7mer-m8 | 57972461 | 57972484 | 153 | -17.19 |
CAediting_1216518 | chr17_57972412_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-7108-5p | 57972412 | 57972418 | 7mer-m8 | 57972411 | 57972431 | 141 | -17.91 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_393 | chr1_1167164_+ | ENSG00000136451.7 | ENST00000258963 | hsa-miR-200b-3p | 57974149 | 57974156 | 8mer-1a | 57974149 | 57974170 | 145 | -11 |
CAediting_393 | chr1_1167164_+ | ENSG00000136451.7 | ENST00000584396 | hsa-miR-200b-3p | 57974149 | 57974156 | 8mer-1a | 57974149 | 57974170 | 145 | -11 |
CAediting_1160181 | chr17_7017644_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-195-3p | 57974238 | 57974244 | 7mer-m8 | 57974237 | 57974258 | 150 | -13.32 |
CAediting_1368054 | chr19_46709310_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-320e | 57973892 | 57973898 | 7mer-m8 | 57973891 | 57973908 | 141 | -15.19 |
CAediting_442554 | chr5_154685830_+ | ENSG00000136451.7 | ENST00000258963 | hsa-miR-1303 | 57974330 | 57974336 | 7mer-m8 | 57974329 | 57974349 | 150 | -14.75 |
CAediting_573001 | chr7_92204086_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-1285-5p | 57972122 | 57972128 | 7mer-m8 | 57972121 | 57972142 | 157 | -17.88 |
CAediting_1160181 | chr17_7017644_- | ENSG00000136451.7 | ENST00000584396 | hsa-miR-195-3p | 57974238 | 57974244 | 7mer-m8 | 57974237 | 57974258 | 150 | -13.32 |
CAediting_1368054 | chr19_46709310_- | ENSG00000136451.7 | ENST00000584396 | hsa-miR-320e | 57973892 | 57973898 | 7mer-m8 | 57973891 | 57973908 | 141 | -15.19 |
CAediting_442554 | chr5_154685830_+ | ENSG00000136451.7 | ENST00000584396 | hsa-miR-1303 | 57974330 | 57974336 | 7mer-m8 | 57974329 | 57974349 | 150 | -14.75 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1160181 | chr17_7017644_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-195-3p | 57973806 | 57973812 | 7mer-m8 | 57973805 | 57973826 | 143 | -10.05 |
CAediting_604450 | chr7_133034877_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-3654 | 57973642 | 57973648 | 7mer-m8 | 57973641 | 57973659 | 140 | -15.36 |
CAediting_688080 | chr9_63819626_+ | ENSG00000136451.7 | ENST00000258963 | hsa-miR-4477b | 57971760 | 57971767 | 8mer-1a | 57971760 | 57971780 | 148 | -7.59 |
CAediting_688081 | chr9_63819627_+ | ENSG00000136451.7 | ENST00000258963 | hsa-miR-4477b | 57971760 | 57971767 | 8mer-1a | 57971760 | 57971780 | 148 | -7.59 |
CAediting_1351755 | chr19_40282625_- | ENSG00000136451.7 | ENST00000258963 | hsa-miR-641 | 57972029 | 57972035 | 7mer-m8 | 57972028 | 57972051 | 140 | -9.62 |
CAediting_1160181 | chr17_7017644_- | ENSG00000136451.7 | ENST00000584396 | hsa-miR-195-3p | 57973806 | 57973812 | 7mer-m8 | 57973805 | 57973826 | 143 | -10.05 |
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The effects of the RNA editing to the stability of the RNA structures for VEZF1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for VEZF1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_1216519 | chr17_57972462_- | 1.04456406083942e-05 | 0.226919060892659 | . | . | . | . |
LIHC | CAediting_1216519 | chr17_57972462_- | 0.0203846283230653 | 0.185560713306839 | . | . | . | . |
LUAD | CAediting_1216519 | chr17_57972462_- | 8.3276464197402e-05 | 0.285192002435342 | . | . | . | . |
HNSC | CAediting_1216519 | chr17_57972462_- | 0.00912735471676136 | 0.26480168911313 | . | . | . | . |
STAD | CAediting_1216519 | chr17_57972462_- | 0.0263220382974583 | 0.213767092375257 | . | . | . | . |
KIRC | CAediting_1216519 | chr17_57972462_- | 0.00172420923805551 | 0.314187022970738 | . | . | . | . |
UCEC | CAediting_1216519 | chr17_57972462_- | 0.00066847061936201 | 0.305050684944592 | . | . | . | . |
SKCM | CAediting_1216519 | chr17_57972462_- | 0.00290938622765578 | 0.313795003178736 | . | . | . | . |
LGG | CAediting_1216520 | chr17_57972464_- | 8.79159184421403e-08 | 0.630347842596631 | . | . | . | . |
BRCA | CAediting_1216520 | chr17_57972464_- | 5.16437972491905e-08 | 0.249207330683848 | . | . | . | . |
LIHC | CAediting_1216520 | chr17_57972464_- | 0.0323944304401202 | 0.160003664634682 | . | . | . | . |
LUAD | CAediting_1216520 | chr17_57972464_- | 2.93888613501476e-06 | 0.302020427907068 | . | . | . | . |
COAD | CAediting_1216520 | chr17_57972464_- | 0.0328399307372123 | 0.280663238750672 | . | . | . | . |
LUSC | CAediting_1216520 | chr17_57972464_- | 0.00255605435411256 | 0.265486421645144 | . | . | . | . |
PRAD | CAediting_1216520 | chr17_57972464_- | 0.000326588089053632 | 0.297317782669932 | . | . | . | . |
HNSC | CAediting_1216520 | chr17_57972464_- | 0.00360794681889748 | 0.25257996339699 | . | . | . | . |
THCA | CAediting_1216520 | chr17_57972464_- | 5.4509750085332e-05 | 0.25847793984565 | . | . | . | . |
KIRC | CAediting_1216520 | chr17_57972464_- | 0.0160259069954152 | 0.180299975917469 | . | . | . | . |
UCEC | CAediting_1216520 | chr17_57972464_- | 2.17714086889072e-05 | 0.345857438693437 | . | . | . | . |
PAAD | CAediting_1216520 | chr17_57972464_- | 0.0301767573234141 | 0.28248728917146 | . | . | . | . |
PCPG | CAediting_1216520 | chr17_57972464_- | 0.0441404847330252 | 0.230051014019776 | . | . | . | . |
SKCM | CAediting_1216520 | chr17_57972464_- | 0.000549157025514292 | 0.298996461325082 | . | . | . | . |
SARC | CAediting_1216520 | chr17_57972464_- | 0.00440813498585512 | 0.278389056393949 | . | . | . | . |
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Relation with cancer stages for VEZF1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_1216520 | chr17_57972464_- | 0.013877093213075 | 0.114901295213406 |
ESCA | pathologic_stage | CAediting_1216520 | chr17_57972464_- | 0.00992716763674405 | 0.344850001422641 |
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Relation with survival for VEZF1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for VEZF1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for VEZF1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |