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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ZNF28 (CAeditome ID:7576)

Gene summary for ZNF28

check button Gene summary
Gene informationGene symbol

ZNF28

Gene ID

7576

Gene namezinc finger protein 28
SynonymsKOX24
Cytomap

19q13.41

Type of geneprotein-coding
Descriptionzinc finger protein 28zinc finger protein KOX24
Modification date20210518
UniProtAcc

P17035

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for ZNF28

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000198538.9
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1384585(52797857, -), CAediting_1384586(52797866, -), CAediting_1384587(52797871, -), CAediting_1384588(52797878, -), CAediting_1384589(52797879, -), CAediting_1384590(52797897, -), CAediting_1384591(52797933, -), CAediting_1384592(52797955, -), CAediting_1384593(52797958, -), CAediting_1384594(52797964, -), CAediting_1384595(52797987, -), CAediting_1384596(52798000, -), CAediting_1384597(52798010, -), CAediting_1384598(52798039, -), CAediting_1384599(52798040, -), CAediting_1384600(52798046, -), CAediting_1384601(52798059, -), CAediting_1384602(52798060, -), CAediting_1384603(52798062, -), CAediting_1384604(52798065, -), CAediting_1384605(52798078, -), CAediting_1384606(52798100, -), CAediting_1384607(52798122, -), CAediting_1384608(52798218, -), CAediting_1384609(52798227, -), CAediting_1384610(52798242, -), CAediting_1384611(52798248, -), CAediting_1384612(52798251, -), CAediting_1384613(52798256, -), CAediting_1384614(52798258, -), CAediting_1384615(52798264, -), CAediting_1384616(52798267, -), CAediting_1384617(52798272, -), CAediting_1384618(52798281, -), CAediting_1384619(52798291, -), CAediting_1384620(52798892, -), CAediting_1384621(52802247, -), CAediting_1384622(52802941, -), CAediting_1384623(52803837, -), CAediting_1384624(52803905, -), CAediting_1384625(52804473, -), CAediting_1384626(52804479, -), CAediting_1384627(52804503, -), CAediting_1384628(52804574, -), CAediting_1384629(52804650, -), CAediting_1384630(52804729, -), CAediting_1384631(52804732, -), CAediting_1384632(52805158, -), CAediting_1384633(52805161, -), CAediting_1384634(52805170, -), CAediting_1384635(52805183, -), CAediting_1384636(52805187, -), CAediting_1384637(52805188, -), CAediting_1384638(52805194, -), CAediting_1384639(52805201, -), CAediting_1384640(52805232, -), CAediting_1384641(52805237, -), CAediting_1384642(52805238, -), CAediting_1384643(52805239, -), CAediting_1384644(52805248, -), CAediting_1384645(52805502, -), CAediting_1384646(52805540, -), CAediting_1384647(52805544, -), CAediting_1384648(52805858, -), CAediting_1384649(52805880, -), CAediting_1384650(52805928, -), CAediting_1384651(52805944, -), CAediting_1384652(52805947, -), CAediting_1384653(52806266, -), CAediting_1384654(52806279, -), CAediting_1384655(52806318, -), CAediting_1384656(52806331, -), CAediting_1384657(52806332, -), CAediting_1384658(52806371, -), CAediting_1384659(52806413, -), CAediting_1384660(52806699, -), CAediting_1384661(52806758, -), CAediting_1384662(52806846, -), CAediting_1384663(52806858, -), CAediting_1384664(52806901, -), CAediting_1384665(52807531, -), CAediting_1384666(52807538, -), CAediting_1384667(52807612, -), CAediting_1384668(52807639, -), CAediting_1384669(52807643, -), CAediting_1384670(52807648, -), CAediting_1384671(52807650, -), CAediting_1384672(52807652, -), CAediting_1384673(52807653, -), CAediting_1384674(52807654, -), CAediting_1384675(52807694, -), CAediting_1384676(52809563, -), CAediting_1384677(52814775, -), CAediting_1384678(52815703, -), CAediting_1384679(52816284, -), CAediting_1384680(52816542, -), CAediting_1384681(52816552, -), CAediting_1384682(52816779, -), CAediting_1384683(52817260, -), CAediting_1384684(52817320, -), CAediting_1384685(52817333, -), CAediting_1384686(52829136, -), CAediting_1384687(52836538, -), CAediting_1384688(52838999, -), CAediting_1384689(52839008, -), CAediting_1384690(52839009, -), CAediting_1384691(52839010, -), CAediting_1384692(52839017, -), CAediting_1384693(52839027, -), CAediting_1384694(52839057, -), CAediting_1384695(52839059, -), CAediting_1384696(52839063, -), CAediting_1384697(52839071, -), CAediting_1384698(52839085, -), CAediting_1384699(52839088, -), CAediting_1384700(52839112, -), CAediting_1384701(52839114, -), CAediting_1384702(52839143, -), CAediting_1384703(52839166, -), CAediting_1384704(52839169, -), CAediting_1384705(52839190, -), CAediting_1384706(52839208, -), CAediting_1384707(52839244, -), CAediting_1384708(52839306, -), CAediting_1384709(52839317, -), CAediting_1384710(52839344, -), CAediting_1384711(52839348, -), CAediting_1384712(52839353, -), CAediting_1384713(52839354, -), CAediting_1384714(52839360, -), CAediting_1384715(52839369, -), CAediting_1384716(52839374, -), CAediting_1384717(52839375, -), CAediting_1384718(52841142, -), CAediting_1384719(52842811, -), CAediting_1384720(52842956, -), CAediting_1384721(52842959, -), CAediting_1384722(52843061, -), CAediting_1384723(52843068, -), CAediting_1384724(52843069, -), CAediting_1384725(52843075, -), CAediting_1384726(52843876, -), CAediting_1384727(52844014, -), CAediting_1384728(52844022, -), CAediting_1384729(52844703, -), CAediting_1384730(52844706, -), CAediting_1384731(52845058, -), CAediting_1384732(52845113, -), CAediting_1384733(52845180, -), CAediting_1384734(52845182, -), CAediting_1384735(52845196, -), CAediting_1384736(52845204, -), CAediting_1384737(52845217, -), CAediting_1384738(52845218, -), CAediting_1384739(52845228, -), CAediting_1384740(52845257, -), CAediting_1384741(52845273, -), CAediting_1384742(52845645, -), CAediting_1384743(52845770, -), CAediting_1384744(52845793, -), CAediting_1384745(52845794, -), CAediting_1384746(52845807, -), CAediting_1384747(52845813, -), CAediting_1384748(52845833, -), CAediting_1384749(52845839, -), CAediting_1384750(52845881, -), CAediting_1384751(52845891, -), CAediting_1384752(52845894, -), CAediting_1384753(52845903, -), CAediting_1384754(52846306, -), CAediting_1384755(52846311, -), CAediting_1384756(52846324, -), CAediting_1384757(52846332, -), CAediting_1384758(52846364, -), CAediting_1384759(52846379, -), CAediting_1384760(52846394, -), CAediting_1384761(52846417, -), CAediting_1384762(52846418, -), CAediting_1384763(52846419, -), CAediting_1384764(52846432, -), CAediting_1384765(52846479, -), CAediting_1384766(52846481, -), CAediting_1384767(52846757, -), CAediting_1384768(52846758, -), CAediting_1384769(52846799, -), CAediting_1384770(52846835, -), CAediting_1384771(52846838, -), CAediting_1384772(52846853, -), CAediting_1384773(52846892, -), CAediting_1384774(52846944, -), CAediting_1384775(52846945, -), CAediting_1384776(52846957, -), CAediting_1384777(52846987, -), CAediting_1384778(52848615, -), CAediting_1384779(52848649, -), CAediting_1384780(52848689, -), CAediting_1384781(52848728, -), CAediting_1384782(52848778, -), CAediting_1384783(52852109, -), CAediting_1384784(52852121, -), CAediting_1384785(52852122, -), CAediting_1384786(52852199, -), CAediting_1384787(52852431, -), CAediting_1384788(52853579, -),

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RNA editing positional annotations for ZNF28 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1384585chr19_52797857_-UTR3
CAediting_1384586chr19_52797866_-UTR3
CAediting_1384587chr19_52797871_-UTR3
CAediting_1384588chr19_52797878_-UTR3
CAediting_1384589chr19_52797879_-UTR3
CAediting_1384590chr19_52797897_-UTR3
CAediting_1384591chr19_52797933_-UTR3
CAediting_1384592chr19_52797955_-UTR3
CAediting_1384593chr19_52797958_-UTR3
CAediting_1384594chr19_52797964_-UTR3
CAediting_1384595chr19_52797987_-UTR3
CAediting_1384596chr19_52798000_-UTR3
CAediting_1384597chr19_52798010_-UTR3
CAediting_1384598chr19_52798039_-UTR3
CAediting_1384599chr19_52798040_-UTR3
CAediting_1384600chr19_52798046_-UTR3
CAediting_1384601chr19_52798059_-UTR3
CAediting_1384602chr19_52798060_-UTR3
CAediting_1384603chr19_52798062_-UTR3
CAediting_1384604chr19_52798065_-UTR3
CAediting_1384605chr19_52798078_-UTR3
CAediting_1384606chr19_52798100_-UTR3
CAediting_1384607chr19_52798122_-UTR3
CAediting_1384608chr19_52798218_-UTR3
CAediting_1384609chr19_52798227_-UTR3
CAediting_1384610chr19_52798242_-UTR3
CAediting_1384611chr19_52798248_-UTR3
CAediting_1384612chr19_52798251_-UTR3
CAediting_1384613chr19_52798256_-UTR3
CAediting_1384614chr19_52798258_-UTR3
CAediting_1384615chr19_52798264_-UTR3
CAediting_1384616chr19_52798267_-UTR3
CAediting_1384617chr19_52798272_-UTR3
CAediting_1384618chr19_52798281_-UTR3
CAediting_1384619chr19_52798291_-UTR3
CAediting_1384620chr19_52798892_-UTR3
CAediting_1384621chr19_52802247_-intronic
CAediting_1384622chr19_52802941_-intronic
CAediting_1384623chr19_52803837_-intronic
CAediting_1384624chr19_52803905_-intronic
CAediting_1384625chr19_52804473_-intronic
CAediting_1384626chr19_52804479_-intronic
CAediting_1384627chr19_52804503_-intronic
CAediting_1384628chr19_52804574_-intronic
CAediting_1384629chr19_52804650_-intronic
CAediting_1384630chr19_52804729_-intronic
CAediting_1384631chr19_52804732_-intronic
CAediting_1384632chr19_52805158_-exonic
CAediting_1384633chr19_52805161_-exonic
CAediting_1384634chr19_52805170_-exonic
CAediting_1384635chr19_52805183_-exonic
CAediting_1384636chr19_52805187_-exonic
CAediting_1384637chr19_52805188_-exonic
CAediting_1384638chr19_52805194_-exonic
CAediting_1384639chr19_52805201_-exonic
CAediting_1384640chr19_52805232_-exonic
CAediting_1384641chr19_52805237_-exonic
CAediting_1384642chr19_52805238_-exonic
CAediting_1384643chr19_52805239_-exonic
CAediting_1384644chr19_52805248_-exonic
CAediting_1384645chr19_52805502_-UTR5
CAediting_1384646chr19_52805540_-UTR5
CAediting_1384647chr19_52805544_-UTR5
CAediting_1384648chr19_52805858_-UTR5
CAediting_1384649chr19_52805880_-UTR5
CAediting_1384650chr19_52805928_-UTR5
CAediting_1384651chr19_52805944_-UTR5
CAediting_1384652chr19_52805947_-UTR5
CAediting_1384653chr19_52806266_-intronic
CAediting_1384654chr19_52806279_-intronic
CAediting_1384655chr19_52806318_-intronic
CAediting_1384656chr19_52806331_-intronic
CAediting_1384657chr19_52806332_-intronic
CAediting_1384658chr19_52806371_-intronic
CAediting_1384659chr19_52806413_-intronic
CAediting_1384660chr19_52806699_-intronic
CAediting_1384661chr19_52806758_-intronic
CAediting_1384662chr19_52806846_-intronic
CAediting_1384663chr19_52806858_-intronic
CAediting_1384664chr19_52806901_-intronic
CAediting_1384665chr19_52807531_-intronic
CAediting_1384666chr19_52807538_-intronic
CAediting_1384667chr19_52807612_-intronic
CAediting_1384668chr19_52807639_-intronic
CAediting_1384669chr19_52807643_-intronic
CAediting_1384670chr19_52807648_-intronic
CAediting_1384671chr19_52807650_-intronic
CAediting_1384672chr19_52807652_-intronic
CAediting_1384673chr19_52807653_-intronic
CAediting_1384674chr19_52807654_-intronic
CAediting_1384675chr19_52807694_-intronic
CAediting_1384676chr19_52809563_-ncRNA_intronic
CAediting_1384677chr19_52814775_-ncRNA_intronic
CAediting_1384678chr19_52815703_-ncRNA_intronic
CAediting_1384679chr19_52816284_-ncRNA_intronic
CAediting_1384680chr19_52816542_-ncRNA_intronic
CAediting_1384681chr19_52816552_-ncRNA_intronic
CAediting_1384682chr19_52816779_-ncRNA_intronic
CAediting_1384683chr19_52817260_-ncRNA_intronic
CAediting_1384684chr19_52817320_-ncRNA_intronic
CAediting_1384685chr19_52817333_-ncRNA_intronic
CAediting_1384686chr19_52829136_-intronic
CAediting_1384687chr19_52836538_-intronic
CAediting_1384688chr19_52838999_-UTR3
CAediting_1384689chr19_52839008_-UTR3
CAediting_1384690chr19_52839009_-UTR3
CAediting_1384691chr19_52839010_-UTR3
CAediting_1384692chr19_52839017_-UTR3
CAediting_1384693chr19_52839027_-UTR3
CAediting_1384694chr19_52839057_-UTR3
CAediting_1384695chr19_52839059_-UTR3
CAediting_1384696chr19_52839063_-UTR3
CAediting_1384697chr19_52839071_-UTR3
CAediting_1384698chr19_52839085_-UTR3
CAediting_1384699chr19_52839088_-UTR3
CAediting_1384700chr19_52839112_-UTR3
CAediting_1384701chr19_52839114_-UTR3
CAediting_1384702chr19_52839143_-UTR3
CAediting_1384703chr19_52839166_-UTR3
CAediting_1384704chr19_52839169_-UTR3
CAediting_1384705chr19_52839190_-UTR3
CAediting_1384706chr19_52839208_-UTR3
CAediting_1384707chr19_52839244_-UTR3
CAediting_1384708chr19_52839306_-UTR3
CAediting_1384709chr19_52839317_-UTR3
CAediting_1384710chr19_52839344_-UTR3
CAediting_1384711chr19_52839348_-UTR3
CAediting_1384712chr19_52839353_-UTR3
CAediting_1384713chr19_52839354_-UTR3
CAediting_1384714chr19_52839360_-UTR3
CAediting_1384715chr19_52839369_-UTR3
CAediting_1384716chr19_52839374_-UTR3
CAediting_1384717chr19_52839375_-UTR3
CAediting_1384718chr19_52841142_-exonic
CAediting_1384719chr19_52842811_-intronic
CAediting_1384720chr19_52842956_-intronic
CAediting_1384721chr19_52842959_-intronic
CAediting_1384722chr19_52843061_-intronic
CAediting_1384723chr19_52843068_-intronic
CAediting_1384724chr19_52843069_-intronic
CAediting_1384725chr19_52843075_-intronic
CAediting_1384726chr19_52843876_-intronic
CAediting_1384727chr19_52844014_-intronic
CAediting_1384728chr19_52844022_-intronic
CAediting_1384729chr19_52844703_-intronic
CAediting_1384730chr19_52844706_-intronic
CAediting_1384731chr19_52845058_-intronic
CAediting_1384732chr19_52845113_-intronic
CAediting_1384733chr19_52845180_-exonic
CAediting_1384734chr19_52845182_-exonic
CAediting_1384735chr19_52845196_-exonic
CAediting_1384736chr19_52845204_-exonic
CAediting_1384737chr19_52845217_-exonic
CAediting_1384738chr19_52845218_-exonic
CAediting_1384739chr19_52845228_-exonic
CAediting_1384740chr19_52845257_-exonic
CAediting_1384741chr19_52845273_-exonic
CAediting_1384742chr19_52845645_-intronic
CAediting_1384743chr19_52845770_-intronic
CAediting_1384744chr19_52845793_-intronic
CAediting_1384745chr19_52845794_-intronic
CAediting_1384746chr19_52845807_-intronic
CAediting_1384747chr19_52845813_-intronic
CAediting_1384748chr19_52845833_-intronic
CAediting_1384749chr19_52845839_-intronic
CAediting_1384750chr19_52845881_-intronic
CAediting_1384751chr19_52845891_-intronic
CAediting_1384752chr19_52845894_-intronic
CAediting_1384753chr19_52845903_-intronic
CAediting_1384754chr19_52846306_-intronic
CAediting_1384755chr19_52846311_-intronic
CAediting_1384756chr19_52846324_-intronic
CAediting_1384757chr19_52846332_-intronic
CAediting_1384758chr19_52846364_-intronic
CAediting_1384759chr19_52846379_-intronic
CAediting_1384760chr19_52846394_-intronic
CAediting_1384761chr19_52846417_-intronic
CAediting_1384762chr19_52846418_-intronic
CAediting_1384763chr19_52846419_-intronic
CAediting_1384764chr19_52846432_-intronic
CAediting_1384765chr19_52846479_-intronic
CAediting_1384766chr19_52846481_-intronic
CAediting_1384767chr19_52846757_-intronic
CAediting_1384768chr19_52846758_-intronic
CAediting_1384769chr19_52846799_-intronic
CAediting_1384770chr19_52846835_-intronic
CAediting_1384771chr19_52846838_-intronic
CAediting_1384772chr19_52846853_-intronic
CAediting_1384773chr19_52846892_-intronic
CAediting_1384774chr19_52846944_-intronic
CAediting_1384775chr19_52846945_-intronic
CAediting_1384776chr19_52846957_-intronic
CAediting_1384777chr19_52846987_-intronic
CAediting_1384778chr19_52848615_-intronic
CAediting_1384779chr19_52848649_-intronic
CAediting_1384780chr19_52848689_-intronic
CAediting_1384781chr19_52848728_-intronic
CAediting_1384782chr19_52848778_-intronic
CAediting_1384783chr19_52852109_-intronic
CAediting_1384784chr19_52852121_-intronic
CAediting_1384785chr19_52852122_-intronic
CAediting_1384786chr19_52852199_-intronic
CAediting_1384787chr19_52852431_-intronic
CAediting_1384788chr19_52853579_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1384585chr19_52797857_-SINEAluAluSc8
CAediting_1384586chr19_52797866_-SINEAluAluSc8
CAediting_1384587chr19_52797871_-SINEAluAluSc8
CAediting_1384588chr19_52797878_-SINEAluAluSc8
CAediting_1384589chr19_52797879_-SINEAluAluSc8
CAediting_1384590chr19_52797897_-SINEAluAluSc8
CAediting_1384591chr19_52797933_-SINEAluAluSc8
CAediting_1384592chr19_52797955_-SINEAluAluSc8
CAediting_1384593chr19_52797958_-SINEAluAluSc8
CAediting_1384594chr19_52797964_-SINEAluAluSc8
CAediting_1384595chr19_52797987_-SINEAluAluSc8
CAediting_1384596chr19_52798000_-SINEAluAluSc8
CAediting_1384597chr19_52798010_-SINEAluAluSc8
CAediting_1384598chr19_52798039_-SINEAluAluSc8
CAediting_1384599chr19_52798040_-SINEAluAluSc8
CAediting_1384600chr19_52798046_-SINEAluAluSc8
CAediting_1384601chr19_52798059_-SINEAluAluSc8
CAediting_1384602chr19_52798060_-SINEAluAluSc8
CAediting_1384603chr19_52798062_-SINEAluAluSc8
CAediting_1384604chr19_52798065_-SINEAluAluSc8
CAediting_1384605chr19_52798078_-SINEAluAluSc8
CAediting_1384606chr19_52798100_-SINEAluAluSc8
CAediting_1384607chr19_52798122_-SINEAluAluSc8
CAediting_1384608chr19_52798218_-SINEAluAluSz
CAediting_1384609chr19_52798227_-SINEAluAluSz
CAediting_1384610chr19_52798242_-SINEAluAluSz
CAediting_1384611chr19_52798248_-SINEAluAluSz
CAediting_1384612chr19_52798251_-SINEAluAluSz
CAediting_1384613chr19_52798256_-SINEAluAluSz
CAediting_1384614chr19_52798258_-SINEAluAluSz
CAediting_1384615chr19_52798264_-SINEAluAluSz
CAediting_1384616chr19_52798267_-SINEAluAluSz
CAediting_1384617chr19_52798272_-SINEAluAluSz
CAediting_1384618chr19_52798281_-SINEAluAluSz
CAediting_1384619chr19_52798291_-SINEAluAluSz
CAediting_1384621chr19_52802247_-SINEAluAluSx4
CAediting_1384622chr19_52802941_-SINEAluAluYj4
CAediting_1384623chr19_52803837_-SINEAluAluSx1
CAediting_1384624chr19_52803905_-SINEAluAluSx1
CAediting_1384625chr19_52804473_-SINEAluAluSz
CAediting_1384626chr19_52804479_-SINEAluAluSz
CAediting_1384627chr19_52804503_-SINEAluAluSz
CAediting_1384628chr19_52804574_-SINEAluAluSz
CAediting_1384629chr19_52804650_-SINEAluAluSz
CAediting_1384630chr19_52804729_-SINEAluAluSz
CAediting_1384631chr19_52804732_-SINEAluAluSz
CAediting_1384632chr19_52805158_-SINEAluAluSc8
CAediting_1384633chr19_52805161_-SINEAluAluSc8
CAediting_1384634chr19_52805170_-SINEAluAluSc8
CAediting_1384635chr19_52805183_-SINEAluAluSc8
CAediting_1384636chr19_52805187_-SINEAluAluSc8
CAediting_1384637chr19_52805188_-SINEAluAluSc8
CAediting_1384638chr19_52805194_-SINEAluAluSc8
CAediting_1384639chr19_52805201_-SINEAluAluSc8
CAediting_1384640chr19_52805232_-SINEAluAluSc8
CAediting_1384641chr19_52805237_-SINEAluAluSc8
CAediting_1384642chr19_52805238_-SINEAluAluSc8
CAediting_1384643chr19_52805239_-SINEAluAluSc8
CAediting_1384644chr19_52805248_-SINEAluAluSc8
CAediting_1384645chr19_52805502_-SINEAluAluSc
CAediting_1384646chr19_52805540_-SINEAluAluSc
CAediting_1384647chr19_52805544_-SINEAluAluSc
CAediting_1384648chr19_52805858_-SINEAluAluSq2
CAediting_1384649chr19_52805880_-SINEAluAluSq2
CAediting_1384650chr19_52805928_-SINEAluAluSq2
CAediting_1384651chr19_52805944_-SINEAluAluSq2
CAediting_1384652chr19_52805947_-SINEAluAluSq2
CAediting_1384653chr19_52806266_-SINEAluAluSx1
CAediting_1384654chr19_52806279_-SINEAluAluSx1
CAediting_1384655chr19_52806318_-SINEAluAluSx1
CAediting_1384656chr19_52806331_-SINEAluAluSx1
CAediting_1384657chr19_52806332_-SINEAluAluSx1
CAediting_1384658chr19_52806371_-SINEAluAluSx1
CAediting_1384659chr19_52806413_-SINEAluAluSx1
CAediting_1384660chr19_52806699_-SINEAluAluSz
CAediting_1384661chr19_52806758_-SINEAluAluSz
CAediting_1384662chr19_52806846_-SINEAluAluSz
CAediting_1384663chr19_52806858_-SINEAluAluSz
CAediting_1384664chr19_52806901_-SINEAluAluSz
CAediting_1384665chr19_52807531_-SINEAluAluSz
CAediting_1384666chr19_52807538_-SINEAluAluSz
CAediting_1384667chr19_52807612_-SINEAluAluSz
CAediting_1384668chr19_52807639_-SINEAluAluSz
CAediting_1384669chr19_52807643_-SINEAluAluSz
CAediting_1384670chr19_52807648_-SINEAluAluSz
CAediting_1384671chr19_52807650_-SINEAluAluSz
CAediting_1384672chr19_52807652_-SINEAluAluSz
CAediting_1384673chr19_52807653_-SINEAluAluSz
CAediting_1384674chr19_52807654_-SINEAluAluSz
CAediting_1384675chr19_52807694_-SINEAluAluSz
CAediting_1384676chr19_52809563_-SINEAluAluSg7
CAediting_1384677chr19_52814775_-SINEAluAluSc8
CAediting_1384678chr19_52815703_-SINEAluAluY
CAediting_1384679chr19_52816284_-SINEAluAluSx
CAediting_1384680chr19_52816542_-SINEAluAluYm1
CAediting_1384681chr19_52816552_-SINEAluAluYm1
CAediting_1384682chr19_52816779_-SINEAluAluSx
CAediting_1384683chr19_52817260_-SINEAluAluSp
CAediting_1384684chr19_52817320_-SINEAluAluSp
CAediting_1384685chr19_52817333_-SINEAluAluSp
CAediting_1384686chr19_52829136_-SINEAluAluY
CAediting_1384687chr19_52836538_-SINEAluAluSx3
CAediting_1384688chr19_52838999_-SINEAluAluSc8
CAediting_1384689chr19_52839008_-SINEAluAluSc8
CAediting_1384690chr19_52839009_-SINEAluAluSc8
CAediting_1384691chr19_52839010_-SINEAluAluSc8
CAediting_1384692chr19_52839017_-SINEAluAluSc8
CAediting_1384693chr19_52839027_-SINEAluAluSc8
CAediting_1384694chr19_52839057_-SINEAluAluSc8
CAediting_1384695chr19_52839059_-SINEAluAluSc8
CAediting_1384696chr19_52839063_-SINEAluAluSc8
CAediting_1384697chr19_52839071_-SINEAluAluSc8
CAediting_1384698chr19_52839085_-SINEAluAluSc8
CAediting_1384699chr19_52839088_-SINEAluAluSc8
CAediting_1384700chr19_52839112_-SINEAluAluSc8
CAediting_1384701chr19_52839114_-SINEAluAluSc8
CAediting_1384702chr19_52839143_-SINEAluAluSc8
CAediting_1384703chr19_52839166_-SINEAluAluSc8
CAediting_1384704chr19_52839169_-SINEAluAluSc8
CAediting_1384705chr19_52839190_-SINEAluAluSc8
CAediting_1384706chr19_52839208_-SINEAluAluSc8
CAediting_1384707chr19_52839244_-SINEAluAluSc8
CAediting_1384708chr19_52839306_-SINEAluAluSx
CAediting_1384709chr19_52839317_-SINEAluAluSx
CAediting_1384710chr19_52839344_-SINEAluAluSx
CAediting_1384711chr19_52839348_-SINEAluAluSx
CAediting_1384712chr19_52839353_-SINEAluAluSx
CAediting_1384713chr19_52839354_-SINEAluAluSx
CAediting_1384714chr19_52839360_-SINEAluAluSx
CAediting_1384715chr19_52839369_-SINEAluAluSx
CAediting_1384716chr19_52839374_-SINEAluAluSx
CAediting_1384717chr19_52839375_-SINEAluAluSx
CAediting_1384719chr19_52842811_-SINEAluAluSx4
CAediting_1384720chr19_52842956_-SINEAluAluSx1
CAediting_1384721chr19_52842959_-SINEAluAluSx1
CAediting_1384722chr19_52843061_-SINEAluAluSx1
CAediting_1384723chr19_52843068_-SINEAluAluSx1
CAediting_1384724chr19_52843069_-SINEAluAluSx1
CAediting_1384725chr19_52843075_-SINEAluAluSx1
CAediting_1384726chr19_52843876_-SINEAluAluSx1
CAediting_1384727chr19_52844014_-SINEAluAluSx1
CAediting_1384728chr19_52844022_-SINEAluAluSx1
CAediting_1384729chr19_52844703_-SINEAluAluSz
CAediting_1384730chr19_52844706_-SINEAluAluSz
CAediting_1384731chr19_52845058_-SINEAluAluSc8
CAediting_1384732chr19_52845113_-SINEAluAluSc8
CAediting_1384733chr19_52845180_-SINEAluAluSc8
CAediting_1384734chr19_52845182_-SINEAluAluSc8
CAediting_1384735chr19_52845196_-SINEAluAluSc8
CAediting_1384736chr19_52845204_-SINEAluAluSc8
CAediting_1384737chr19_52845217_-SINEAluAluSc8
CAediting_1384738chr19_52845218_-SINEAluAluSc8
CAediting_1384739chr19_52845228_-SINEAluAluSc8
CAediting_1384740chr19_52845257_-SINEAluAluSc8
CAediting_1384741chr19_52845273_-SINEAluAluSc8
CAediting_1384742chr19_52845645_-SINEAluAluSc
CAediting_1384743chr19_52845770_-SINEAluAluSp
CAediting_1384744chr19_52845793_-SINEAluAluSp
CAediting_1384745chr19_52845794_-SINEAluAluSp
CAediting_1384746chr19_52845807_-SINEAluAluSp
CAediting_1384747chr19_52845813_-SINEAluAluSp
CAediting_1384748chr19_52845833_-SINEAluAluSp
CAediting_1384749chr19_52845839_-SINEAluAluSp
CAediting_1384750chr19_52845881_-SINEAluAluSp
CAediting_1384751chr19_52845891_-SINEAluAluSp
CAediting_1384752chr19_52845894_-SINEAluAluSp
CAediting_1384753chr19_52845903_-SINEAluAluSp
CAediting_1384754chr19_52846306_-SINEAluAluSx1
CAediting_1384755chr19_52846311_-SINEAluAluSx1
CAediting_1384756chr19_52846324_-SINEAluAluSx1
CAediting_1384757chr19_52846332_-SINEAluAluSx1
CAediting_1384758chr19_52846364_-SINEAluAluSx1
CAediting_1384759chr19_52846379_-SINEAluAluSx1
CAediting_1384760chr19_52846394_-SINEAluAluSx1
CAediting_1384761chr19_52846417_-SINEAluAluSx1
CAediting_1384762chr19_52846418_-SINEAluAluSx1
CAediting_1384763chr19_52846419_-SINEAluAluSx1
CAediting_1384764chr19_52846432_-SINEAluAluSx1
CAediting_1384765chr19_52846479_-SINEAluAluSx1
CAediting_1384766chr19_52846481_-SINEAluAluSx1
CAediting_1384767chr19_52846757_-SINEAluAluSz
CAediting_1384768chr19_52846758_-SINEAluAluSz
CAediting_1384769chr19_52846799_-SINEAluAluSz
CAediting_1384770chr19_52846835_-SINEAluAluSz
CAediting_1384771chr19_52846838_-SINEAluAluSz
CAediting_1384772chr19_52846853_-SINEAluAluSz
CAediting_1384773chr19_52846892_-SINEAluAluSz
CAediting_1384774chr19_52846944_-SINEAluAluSz
CAediting_1384775chr19_52846945_-SINEAluAluSz
CAediting_1384776chr19_52846957_-SINEAluAluSz
CAediting_1384777chr19_52846987_-SINEAluAluSz
CAediting_1384778chr19_52848615_-SINEAluAluSz
CAediting_1384779chr19_52848649_-SINEAluAluSz
CAediting_1384780chr19_52848689_-SINEAluAluSz
CAediting_1384781chr19_52848728_-SINEAluAluSz
CAediting_1384782chr19_52848778_-SINEAluAluSz
CAediting_1384783chr19_52852109_-SINEAluAluSq2
CAediting_1384784chr19_52852121_-SINEAluAluSq2
CAediting_1384785chr19_52852122_-SINEAluAluSq2
CAediting_1384786chr19_52852199_-SINEAluAluSq2
CAediting_1384787chr19_52852431_-SINEAluAluSg7
CAediting_1384788chr19_52853579_-SINEAluAluSx

Top

RNA A-to-I editing events in the alternative splicing sites for ZNF28

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000198538.9.ZNF28.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000198538.9.ZNF28.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZNF28

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
TGCT.CAediting_1384587.ENSG00000198538.ZNF28.png
Soverview
TGCT.CAediting_1384689.ENSG00000198538.ZNF28.png
Soverview
TGCT.CAediting_1384710.ENSG00000198538.ZNF28.png
Soverview

Top

Protein coding region RNA A-to-I editings for ZNF28

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for ZNF28

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1384587chr19_52797871_-ENSG00000198538.9ENST00000438150hsa-miR-797752797869527978757mer-m85279786852797885140.00-15.95
CAediting_1384591chr19_52797933_-ENSG00000198538.9ENST00000438150hsa-miR-197252797928527979347mer-m85279792752797947164.00-30.74
CAediting_1384591chr19_52797933_-ENSG00000198538.9ENST00000438150hsa-miR-197252797928527979347mer-m85279792752797947164.00-30.74
CAediting_1384596chr19_52798000_-ENSG00000198538.9ENST00000438150hsa-miR-17-3p52797997527980037mer-m85279799652798017142.00-19.43
CAediting_1384603chr19_52798062_-ENSG00000198538.9ENST00000438150hsa-miR-6516-5p52798059527980657mer-m85279805852798081145.00-13.05
CAediting_1384617chr19_52798272_-ENSG00000198538.9ENST00000438150hsa-miR-10394-5p52798272527982787mer-m85279827152798293146.00-23.00
CAediting_1384617chr19_52798272_-ENSG00000198538.9ENST00000438150hsa-miR-120552798272527982787mer-m85279827152798291146.00-19.56
CAediting_1384617chr19_52798272_-ENSG00000198538.9ENST00000438150hsa-miR-441852798271527982777mer-m85279827052798287156.00-22.39
CAediting_1384617chr19_52798272_-ENSG00000198538.9ENST00000438150hsa-miR-509-3-5p52798271527982777mer-m85279827052798292161.00-24.57
CAediting_1384617chr19_52798272_-ENSG00000198538.9ENST00000438150hsa-miR-509-5p52798271527982777mer-m85279827052798290152.00-19.77
CAediting_1384617chr19_52798272_-ENSG00000198538.9ENST00000438150hsa-miR-509-5p52798271527982777mer-m85279827052798290152.00-19.77
CAediting_1384618chr19_52798281_-ENSG00000198538.9ENST00000438150hsa-miR-463452798277527982837mer-m85279827652798299147.00-29.32
CAediting_1384585chr19_52797857_-ENSG00000198538.9ENST00000438150hsa-miR-663b52797852527978587mer-m85279785152797870149.00-26.08
CAediting_1384589chr19_52797879_-ENSG00000198538.9ENST00000438150hsa-miR-449752797878527978847mer-m85279787752797891143.00-24.41
CAediting_1384597chr19_52798010_-ENSG00000198538.9ENST00000438150hsa-miR-4676-5p52798007527980137mer-m85279800652798026162.00-20.68
CAediting_1384597chr19_52798010_-ENSG00000198538.9ENST00000438150hsa-miR-57552798007527980137mer-m85279800652798025149.00-21.16
CAediting_1384598chr19_52798039_-ENSG00000198538.9ENST00000438150hsa-miR-453952798039527980446mer5279803852798057141.00-21.18
CAediting_1384598chr19_52798039_-ENSG00000198538.9ENST00000438150hsa-miR-607852798035527980428mer-1a5279803552798053149.00-21.50
CAediting_1384600chr19_52798046_-ENSG00000198538.9ENST00000438150hsa-miR-1247-3p52798044527980507mer-m85279804352798065152.00-23.21
CAediting_1384601chr19_52798059_-ENSG00000198538.9ENST00000438150hsa-miR-20b-3p52798059527980657mer-m85279805852798078141.00-12.55
CAediting_1384601chr19_52798059_-ENSG00000198538.9ENST00000438150hsa-miR-392952798056527980616mer5279805552798079144.00-25.57
CAediting_1384601chr19_52798059_-ENSG00000198538.9ENST00000438150hsa-miR-485-5p52798055527980617mer-m85279805452798075148.00-18.54
CAediting_1384601chr19_52798059_-ENSG00000198538.9ENST00000438150hsa-miR-6884-5p52798055527980617mer-m85279805452798076150.00-18.66
CAediting_1384602chr19_52798060_-ENSG00000198538.9ENST00000438150hsa-miR-431-3p52798056527980627mer-m85279805552798075145.00-16.08
CAediting_1384605chr19_52798078_-ENSG00000198538.9ENST00000438150hsa-miR-122-3p52798077527980826mer5279807652798096145.00-17.37
CAediting_1384606chr19_52798100_-ENSG00000198538.9ENST00000438150hsa-miR-4804-5p52798096527981016mer5279809552798114140.00-20.61
CAediting_1384607chr19_52798122_-ENSG00000198538.9ENST00000438150hsa-miR-4733-5p52798119527981257mer-m85279811852798139148.00-11.09
CAediting_1384610chr19_52798242_-ENSG00000198538.9ENST00000438150hsa-miR-1180-5p52798237527982448mer-1a5279823752798257153.00-22.80
CAediting_1384610chr19_52798242_-ENSG00000198538.9ENST00000438150hsa-miR-7114-3p52798237527982448mer-1a5279823752798257155.00-24.59
CAediting_1384611chr19_52798248_-ENSG00000198538.9ENST00000438150hsa-miR-6849-3p52798244527982507mer-m85279824352798262151.00-22.90
CAediting_1384613chr19_52798256_-ENSG00000198538.9ENST00000438150hsa-miR-4749-3p52798253527982597mer-m85279825252798271140.00-15.33
CAediting_1384614chr19_52798258_-ENSG00000198538.9ENST00000438150hsa-miR-150-5p52798255527982617mer-m85279825452798275140.00-15.80
CAediting_1384614chr19_52798258_-ENSG00000198538.9ENST00000438150hsa-miR-186-3p52798256527982638mer-1a5279825652798276142.00-15.82
CAediting_1384614chr19_52798258_-ENSG00000198538.9ENST00000438150hsa-miR-6778-3p52798253527982597mer-m85279825252798272143.00-13.97
CAediting_1384616chr19_52798267_-ENSG00000198538.9ENST00000438150hsa-miR-371a-3p52798262527982687mer-m85279826152798283153.00-20.31
CAediting_1384594chr19_52797964_-ENSG00000198538.9ENST00000438150hsa-miR-480152797963527979686mer5279796252797985145.00-16.47
CAediting_1384595chr19_52797987_-ENSG00000198538.9ENST00000438150hsa-miR-10400-5p52797984527979907mer-1a5279798452798005141.00-23.89
CAediting_1384595chr19_52797987_-ENSG00000198538.9ENST00000438150hsa-miR-430452797987527979937mer-m85279798652798003144.00-16.46
CAediting_1384595chr19_52797987_-ENSG00000198538.9ENST00000438150hsa-miR-6770-3p52797984527979907mer-m85279798352798004154.00-21.23
CAediting_1384595chr19_52797987_-ENSG00000198538.9ENST00000438150hsa-miR-6770-3p52797984527979907mer-m85279798352798004154.00-21.23
CAediting_1384595chr19_52797987_-ENSG00000198538.9ENST00000438150hsa-miR-6770-3p52797984527979907mer-m85279798352798004154.00-21.23
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-518a-3p52798260527982667mer-m85279825952798279154.00-19.08
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-518a-3p52798260527982667mer-m85279825952798279154.00-19.08
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-518b52798260527982667mer-m85279825952798281153.00-18.58
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-518c-3p52798260527982667mer-m85279825952798282149.00-20.60
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-518d-3p52798260527982667mer-m85279825952798279151.00-19.26
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-518e-3p52798261527982677mer-m85279826052798281152.00-18.43
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-518f-3p52798260527982667mer-m85279825952798280149.00-14.27
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-526a-3p52798260527982667mer-m85279825952798281153.00-14.50

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1384617chr19_52798272_-ENSG00000198538.9ENST00000438150hsa-miR-125652798267527982748mer-1a5279826752798288140-12.37
CAediting_1384619chr19_52798291_-ENSG00000198538.9ENST00000438150hsa-miR-128-3p52798286527982927mer-m85279828552798304151-23.71
CAediting_1384619chr19_52798291_-ENSG00000198538.9ENST00000438150hsa-miR-128-3p52798286527982927mer-m85279828552798304151-23.71
CAediting_1384610chr19_52798242_-ENSG00000198538.9ENST00000438150hsa-miR-192-5p52798237527982437mer-m85279823652798256146-14.9
CAediting_1384596chr19_52798000_-ENSG00000198538.9ENST00000438150hsa-miR-20b-3p52797997527980037mer-m85279799652798017147-15.85
CAediting_1384610chr19_52798242_-ENSG00000198538.9ENST00000438150hsa-miR-215-5p52798237527982437mer-m85279823652798256146-12.46
CAediting_1384619chr19_52798291_-ENSG00000198538.9ENST00000438150hsa-miR-216a-3p52798286527982927mer-m85279828552798306143-20.48
CAediting_1384587chr19_52797871_-ENSG00000198538.9ENST00000438150hsa-miR-216a-5p52797866527978738mer-1a5279786652797887150-17.02
CAediting_1384613chr19_52798256_-ENSG00000198538.9ENST00000438150hsa-miR-2682-3p52798253527982586mer5279825252798274143-16.77
CAediting_1384614chr19_52798258_-ENSG00000198538.9ENST00000438150hsa-miR-2682-3p52798253527982586mer5279825252798274143-16.77
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-302a-3p52798261527982677mer-m85279826052798281151-18.89
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-302b-3p52798261527982677mer-m85279826052798282149-13.18
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-302c-3p52798261527982677mer-m85279826052798280153-15.11
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-302d-3p52798261527982677mer-m85279826052798283152-17.23
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-302e52798261527982677mer-m85279826052798277150-12.61
CAediting_1384600chr19_52798046_-ENSG00000198538.9ENST00000438150hsa-miR-3689a-3p52798046527980527mer-m85279804552798065154-27.42
CAediting_1384608chr19_52798218_-ENSG00000198538.9ENST00000438150hsa-miR-371a-5p52798216527982238mer-1a5279821652798235147-13.56
CAediting_1384619chr19_52798291_-ENSG00000198538.9ENST00000438150hsa-miR-371b-3p52798289527982957mer-m85279828852798311152-21.01
CAediting_1384607chr19_52798122_-ENSG00000198538.9ENST00000438150hsa-miR-371b-5p52798120527981278mer-1a5279812052798140148-10.8
CAediting_1384607chr19_52798122_-ENSG00000198538.9ENST00000438150hsa-miR-373-5p52798120527981278mer-1a5279812052798142143-10.28
CAediting_1384601chr19_52798059_-ENSG00000198538.9ENST00000438150hsa-miR-377-5p52798055527980617mer-m85279805452798075151-15.56
CAediting_1384602chr19_52798060_-ENSG00000198538.9ENST00000438150hsa-miR-377-5p52798055527980617mer-m85279805452798075151-15.56
CAediting_1384608chr19_52798218_-ENSG00000198538.9ENST00000438150hsa-miR-427352798213527982197mer-m85279821252798229144-9.01
CAediting_1384585chr19_52797857_-ENSG00000198538.9ENST00000438150hsa-miR-428452797853527978608mer-1a5279785352797870143-19.33
CAediting_1384590chr19_52797897_-ENSG00000198538.9ENST00000438150hsa-miR-4701-3p52797893527978997mer-m85279789252797911146-13.81
CAediting_1384616chr19_52798267_-ENSG00000198538.9ENST00000438150hsa-miR-4720-5p52798266527982727mer-m85279826552798286147-13.05
CAediting_1384613chr19_52798256_-ENSG00000198538.9ENST00000438150hsa-miR-4757-5p52798251527982588mer-1a5279825152798272147-17.13
CAediting_1384616chr19_52798267_-ENSG00000198538.9ENST00000438150hsa-miR-4799-3p52798266527982727mer-m85279826552798284147-13.81
CAediting_1384600chr19_52798046_-ENSG00000198538.9ENST00000438150hsa-miR-490-3p52798042527980487mer-m85279804152798063146-16.15
CAediting_1384613chr19_52798256_-ENSG00000198538.9ENST00000438150hsa-miR-513c-5p52798256527982616mer5279825552798276151-17.77
CAediting_1384614chr19_52798258_-ENSG00000198538.9ENST00000438150hsa-miR-513c-5p52798256527982616mer5279825552798276151-17.77
CAediting_1384607chr19_52798122_-ENSG00000198538.9ENST00000438150hsa-miR-514b-5p52798120527981256mer5279811952798141145-14.46
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-519d-3p52798260527982667mer-m85279825952798279146-12.88
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-520a-3p52798261527982677mer-m85279826052798281146-11.11
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-520b-3p52798261527982677mer-m85279826052798281148-13.31
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-520c-3p52798261527982677mer-m85279826052798282148-13.66
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-520d-3p52798261527982677mer-m85279826052798280146-14.41
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-520e-3p52798261527982677mer-m85279826052798280147-16.11
CAediting_1384615chr19_52798264_-ENSG00000198538.9ENST00000438150hsa-miR-526b-3p52798260527982667mer-m85279825952798281153-13.9
CAediting_1384616chr19_52798267_-ENSG00000198538.9ENST00000438150hsa-miR-5588-5p52798266527982727mer-m85279826552798284153-18.75
CAediting_1384592chr19_52797955_-ENSG00000198538.9ENST00000438150hsa-miR-593-3p52797950527979556mer5279794952797967140-16.84
CAediting_1384601chr19_52798059_-ENSG00000198538.9ENST00000438150hsa-miR-608652798055527980617mer-m85279805452798074145-20.42
CAediting_1384602chr19_52798060_-ENSG00000198538.9ENST00000438150hsa-miR-608652798055527980617mer-m85279805452798074145-20.42
CAediting_1384607chr19_52798122_-ENSG00000198538.9ENST00000438150hsa-miR-616-5p52798120527981278mer-1a5279812052798141142-8.18
CAediting_1384590chr19_52797897_-ENSG00000198538.9ENST00000438150hsa-miR-6736-5p52797893527978997mer-m85279789252797911144-16.16
CAediting_1384613chr19_52798256_-ENSG00000198538.9ENST00000438150hsa-miR-6744-3p52798251527982588mer-1a5279825152798273145-20.59
CAediting_1384590chr19_52797897_-ENSG00000198538.9ENST00000438150hsa-miR-6748-5p52797892527978987mer-m85279789152797915150-19.16
CAediting_1384589chr19_52797879_-ENSG00000198538.9ENST00000438150hsa-miR-6771-5p52797878527978858mer-1a5279787852797898146-23.98
CAediting_1384600chr19_52798046_-ENSG00000198538.9ENST00000438150hsa-miR-6779-5p52798046527980527mer-m85279804552798063152-25.72
CAediting_1384600chr19_52798046_-ENSG00000198538.9ENST00000438150hsa-miR-6780a-5p52798046527980527mer-m85279804552798068143-21.2
CAediting_1384618chr19_52798281_-ENSG00000198538.9ENST00000438150hsa-miR-6807-5p52798281527982877mer-m85279828052798303142-18.14
CAediting_1384600chr19_52798046_-ENSG00000198538.9ENST00000438150hsa-miR-6852-5p52798044527980496mer5279804352798063140-21.22
CAediting_1384612chr19_52798251_-ENSG00000198538.9ENST00000438150hsa-miR-6878-3p52798250527982578mer-1a5279825052798270146-14.36
CAediting_1384613chr19_52798256_-ENSG00000198538.9ENST00000438150hsa-miR-6878-3p52798250527982578mer-1a5279825052798270146-14.36
CAediting_1384603chr19_52798062_-ENSG00000198538.9ENST00000438150hsa-miR-92152798062527980687mer-m85279806152798084147-14.13
CAediting_1384604chr19_52798065_-ENSG00000198538.9ENST00000438150hsa-miR-92152798062527980687mer-m85279806152798084147-14.13

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1160181chr17_7017644_-ENSG00000198538.9ENST00000438150hsa-miR-195-3p52798345527983528mer-1a5279834552798366149-11.65
CAediting_1306323chr19_13836462_-ENSG00000198538.9ENST00000438150hsa-miR-27a-3p52797847527978537mer-m85279784652797866167-28.19
CAediting_524911chr7_5495852_-ENSG00000198538.9ENST00000438150hsa-miR-589-3p52798103527981097mer-m85279810252798128150-18.44

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1306323chr19_13836462_-ENSG00000198538.9ENST00000438150hsa-miR-27a-3p52797466527974727mer-m85279746552797486154-15.68
CAediting_1306323chr19_13836462_-ENSG00000198538.9ENST00000438150hsa-miR-27a-3p52799083527990897mer-m85279908252799102145-9.93

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ZNF28

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for ZNF28

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BLCACAediting_1384587chr19_52797871_-0.003774435927879440.2476910020126960.03484894136168650.181783693038833..
BRCACAediting_1384587chr19_52797871_-1.25441420493717e-240.425840421629681....
CESCCAediting_1384587chr19_52797871_-7.93197843894236e-050.384215665768261....
LUADCAediting_1384587chr19_52797871_-2.98785118131805e-100.407517759726683....
LUSCCAediting_1384587chr19_52797871_-2.73274736540935e-060.399488876579685..0.01534098676193440.213058415275893
PRADCAediting_1384587chr19_52797871_-0.0006614544977991030.362077566952145....
HNSCCAediting_1384587chr19_52797871_-1.1014771210603e-050.352677396469568....
STADCAediting_1384587chr19_52797871_-0.0007465801920683180.283693031038134....
UCECCAediting_1384587chr19_52797871_-3.43662887599537e-070.455943231036009....
OVCAediting_1384587chr19_52797871_-1.73137026048327e-050.306234323735725....
PAADCAediting_1384587chr19_52797871_-0.04614519471015270.267621590436689....
SKCMCAediting_1384587chr19_52797871_-0.007115928732553760.34976998848222....
TGCTCAediting_1384587chr19_52797871_-2.86309439281924e-100.607018140650399....
BLCACAediting_1384689chr19_52839008_-2.16075689165993e-090.399959443076756....
LGGCAediting_1384689chr19_52839008_-0.01471828530906330.301328593610144....
BRCACAediting_1384689chr19_52839008_-8.30515418462479e-640.540660630449973....
LIHCCAediting_1384689chr19_52839008_-1.21459492912514e-050.270185059680811....
CESCCAediting_1384689chr19_52839008_-1.72981072392024e-060.349564626585049....
LUADCAediting_1384689chr19_52839008_-4.8463981899608e-290.5072650765214....
COADCAediting_1384689chr19_52839008_-2.21949997213382e-050.317332434792744....
LUSCCAediting_1384689chr19_52839008_-2.31628301397734e-060.295327044786025....
PRADCAediting_1384689chr19_52839008_-6.2677874188111e-190.471909859808385....
HNSCCAediting_1384689chr19_52839008_-9.15526402606242e-050.253980082046532....
STADCAediting_1384689chr19_52839008_-1.96177120578037e-070.331522085643316....
THCACAediting_1384689chr19_52839008_-9.27400941577515e-080.300902479352545....
KIRCCAediting_1384689chr19_52839008_-1.35880010909897e-080.264239137897994....
UCECCAediting_1384689chr19_52839008_-6.75416343414077e-120.383233727263922....
KIRPCAediting_1384689chr19_52839008_-8.47993872840739e-060.394028372252566....
ESCACAediting_1384689chr19_52839008_-0.0001190340333182360.361864781228965....
OVCAediting_1384689chr19_52839008_-8.56774871875118e-080.333938870029339....
PAADCAediting_1384689chr19_52839008_-3.9594140413633e-070.42288615838148....
SKCMCAediting_1384689chr19_52839008_-0.0009318414975061540.294829742483761....
READCAediting_1384689chr19_52839008_-0.03162447700817620.30137368090565....
SARCCAediting_1384689chr19_52839008_-0.002702872769669740.294038732153665....
TGCTCAediting_1384689chr19_52839008_-7.31831373566132e-070.473742686785898....
BLCACAediting_1384690chr19_52839009_-0.001529131535648730.334745723988404....
BRCACAediting_1384690chr19_52839009_-3.08617521020922e-260.469697846332876....
LIHCCAediting_1384690chr19_52839009_-0.001075023360359050.234238057847682....
CESCCAediting_1384690chr19_52839009_-0.0002315124763041460.391436941278647....
LUADCAediting_1384690chr19_52839009_-2.34012607321321e-150.492864626865852....
PRADCAediting_1384690chr19_52839009_-0.005866126319704090.370172936971975....
HNSCCAediting_1384690chr19_52839009_-0.04813026487086690.190632069476746....
STADCAediting_1384690chr19_52839009_-9.63585139870873e-050.337802998411558....
KIRCCAediting_1384690chr19_52839009_-0.000487821776265840.253901794904333....
UCECCAediting_1384690chr19_52839009_-0.0002086976525637560.362675942096222....
OVCAediting_1384690chr19_52839009_-0.0005389497117805530.287806570121997....
PAADCAediting_1384690chr19_52839009_-0.001281391651702970.402995923383267....
TGCTCAediting_1384690chr19_52839009_-0.002111598258599130.409405339002267....
BRCACAediting_1384692chr19_52839017_-3.69325587444481e-100.46081292660416....
LIHCCAediting_1384692chr19_52839017_-....0.04613566142667360.198913729248115
LUADCAediting_1384692chr19_52839017_-0.001591325651339470.314841806004396....
OVCAediting_1384692chr19_52839017_-0.03143399542878470.271392688924513....
BLCACAediting_1384696chr19_52839063_-9.76332982057137e-100.432444412127506....
BRCACAediting_1384696chr19_52839063_-2.12819009136599e-270.424603951984587....
LIHCCAediting_1384696chr19_52839063_-0.002947605490518610.224134654864814....
CESCCAediting_1384696chr19_52839063_-....0.04649208304617730.208132162941095
LUADCAediting_1384696chr19_52839063_-9.17357417533117e-170.467387482663664....
LUSCCAediting_1384696chr19_52839063_-1.5266265043367e-050.342922689084995....
PRADCAediting_1384696chr19_52839063_-6.77394112990246e-060.379162908700326..0.03051662408308420.187684919586839
STADCAediting_1384696chr19_52839063_-5.1625430562669e-050.307921851017982....
THCACAediting_1384696chr19_52839063_-8.62518628593768e-050.302620288575192....
KIRCCAediting_1384696chr19_52839063_-0.001358099634217710.200343084063407....
UCECCAediting_1384696chr19_52839063_-3.20253565433303e-100.443561397009155....
OVCAediting_1384696chr19_52839063_-0.0007227939757295570.235967442363033....
PAADCAediting_1384696chr19_52839063_-0.0007732622480871440.359865402324243....
SKCMCAediting_1384696chr19_52839063_-0.002963386912557020.33643572824513....
SARCCAediting_1384696chr19_52839063_-0.0002045415007499620.426973718009556....
TGCTCAediting_1384696chr19_52839063_-0.0005348094640199340.417778003741286....
BLCACAediting_1384710chr19_52839344_-6.28631092238886e-090.430638628544246....
BRCACAediting_1384710chr19_52839344_-7.97028490782993e-360.467678494879619....
LIHCCAediting_1384710chr19_52839344_-0.001452654152452440.243753175022084....
CESCCAediting_1384710chr19_52839344_-....0.008050364031962210.287314826803332
LUADCAediting_1384710chr19_52839344_-1.84334018220512e-140.415615524743881....
LUSCCAediting_1384710chr19_52839344_-1.25929759057036e-060.372179656902157....
PRADCAediting_1384710chr19_52839344_-1.7900338570022e-060.376150085631878....
STADCAediting_1384710chr19_52839344_-0.002175344871002960.247602853462316....
THCACAediting_1384710chr19_52839344_-0.007092316714720930.200600824777621....
UCECCAediting_1384710chr19_52839344_-0.006353483575333510.224882740601581....
ESCACAediting_1384710chr19_52839344_-..0.008874802466043220.322127792910528..
OVCAediting_1384710chr19_52839344_-0.0005224705296026450.235718356007821....
PAADCAediting_1384710chr19_52839344_-0.001088730721211410.352321251010475....
SARCCAediting_1384710chr19_52839344_-0.002274758087260250.340649810826022....
TGCTCAediting_1384710chr19_52839344_-1.95294689164732e-050.525139040492215....

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Relation with cancer stages for ZNF28

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BRCApathologic_stageCAediting_1384689chr19_52839008_-0.01617588440102490.0844797382369891
BRCApathologic_stageCAediting_1384690chr19_52839009_-0.03701726892308730.0992366489233174
HNSCclinical_stageCAediting_1384710chr19_52839344_-0.005637256620467970.264678968354971
KIRCpathologic_stageCAediting_1384689chr19_52839008_-0.0002121926149142380.174339760989837
KIRCpathologic_stageCAediting_1384710chr19_52839344_-0.00702049163626680.166821440421033
KIRPclinical_stageCAediting_1384710chr19_52839344_-0.0370388766255935-0.339506451636874
KIRPpathologic_stageCAediting_1384689chr19_52839008_-0.007994353715176610.251678374335039
LIHCpathologic_stageCAediting_1384689chr19_52839008_-0.0186343010850605-0.152098765002153
PAADpathologic_stageCAediting_1384587chr19_52797871_-0.0231580057794094-0.303109821176979
PAADpathologic_stageCAediting_1384690chr19_52839009_-0.04493690353722050.257721956031912
STADpathologic_stageCAediting_1384587chr19_52797871_-0.0174908905127029-0.208131046105155
THCApathologic_stageCAediting_1384696chr19_52839063_-0.04122389883942080.160578573523174

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Relation with survival for ZNF28

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
CESCCAediting_1384587chr19_52797871_-2.96974241307257e-050.001841171172.66
LUADCAediting_1384587chr19_52797871_-0.03297980617097030.02468956.25996
LUADCAediting_1384689chr19_52839008_-0.02193376497954120.006741174.68446

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RelatedDrugs for ZNF28

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ZNF28

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource