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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: ZNF10 (CAeditome ID:7556) |
Gene summary for ZNF10 |
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Gene information | Gene symbol | ZNF10 | Gene ID | 7556 |
Gene name | zinc finger protein 10 | |
Synonyms | KOX1 | |
Cytomap | 12q24.33 | |
Type of gene | protein-coding | |
Description | zinc finger protein 10zinc finger protein 10 (KOX 1)zinc finger protein KOX1 | |
Modification date | 20210518 | |
UniProtAcc | P21506 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
ZNF10 | GO:0005634 | Zinc finger protein 10 | 23665872 |
ZNF10 | GO:0032991 | Zinc finger protein 10 | 17512541 |
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RNA A-to-I events for ZNF10 |
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CAediting_950326(133134171, +), CAediting_950327(133134219, +), CAediting_950328(133134225, +), CAediting_950329(133134228, +), CAediting_950330(133134233, +), CAediting_950331(133134234, +), CAediting_950332(133134239, +), CAediting_950333(133134300, +), CAediting_950334(133134301, +), CAediting_950335(133139818, +), CAediting_950336(133140096, +), CAediting_950337(133140099, +), CAediting_950338(133140105, +), CAediting_950339(133140118, +), CAediting_950340(133140187, +), CAediting_950341(133140283, +), CAediting_950342(133140287, +), CAediting_950343(133140391, +), CAediting_950344(133140392, +), CAediting_950345(133142392, +), CAediting_950346(133146696, +), CAediting_950347(133149631, +), CAediting_950348(133155534, +), CAediting_950349(133159133, +), |
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RNA editing positional annotations for ZNF10 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_950326 | chr12_133134171_+ | ncRNA_intronic |
CAediting_950327 | chr12_133134219_+ | ncRNA_intronic |
CAediting_950328 | chr12_133134225_+ | ncRNA_intronic |
CAediting_950329 | chr12_133134228_+ | ncRNA_intronic |
CAediting_950330 | chr12_133134233_+ | ncRNA_intronic |
CAediting_950331 | chr12_133134234_+ | ncRNA_intronic |
CAediting_950332 | chr12_133134239_+ | ncRNA_intronic |
CAediting_950333 | chr12_133134300_+ | ncRNA_intronic |
CAediting_950334 | chr12_133134301_+ | ncRNA_intronic |
CAediting_950335 | chr12_133139818_+ | ncRNA_intronic |
CAediting_950336 | chr12_133140096_+ | ncRNA_intronic |
CAediting_950337 | chr12_133140099_+ | ncRNA_intronic |
CAediting_950338 | chr12_133140105_+ | ncRNA_intronic |
CAediting_950339 | chr12_133140118_+ | ncRNA_intronic |
CAediting_950340 | chr12_133140187_+ | ncRNA_intronic |
CAediting_950341 | chr12_133140283_+ | ncRNA_intronic |
CAediting_950342 | chr12_133140287_+ | ncRNA_intronic |
CAediting_950343 | chr12_133140391_+ | ncRNA_intronic |
CAediting_950344 | chr12_133140392_+ | ncRNA_intronic |
CAediting_950345 | chr12_133142392_+ | ncRNA_intronic |
CAediting_950346 | chr12_133146696_+ | ncRNA_intronic |
CAediting_950347 | chr12_133149631_+ | ncRNA_intronic |
CAediting_950348 | chr12_133155534_+ | exonic |
CAediting_950349 | chr12_133159133_+ | UTR3 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_950326 | chr12_133134171_+ | SINE | Alu | AluSx1 |
CAediting_950327 | chr12_133134219_+ | SINE | Alu | AluSx1 |
CAediting_950328 | chr12_133134225_+ | SINE | Alu | AluSx1 |
CAediting_950329 | chr12_133134228_+ | SINE | Alu | AluSx1 |
CAediting_950330 | chr12_133134233_+ | SINE | Alu | AluSx1 |
CAediting_950331 | chr12_133134234_+ | SINE | Alu | AluSx1 |
CAediting_950332 | chr12_133134239_+ | SINE | Alu | AluSx1 |
CAediting_950333 | chr12_133134300_+ | SINE | Alu | AluSx1 |
CAediting_950334 | chr12_133134301_+ | SINE | Alu | AluSx1 |
CAediting_950335 | chr12_133139818_+ | SINE | Alu | AluJr4 |
CAediting_950336 | chr12_133140096_+ | SINE | Alu | AluJb |
CAediting_950337 | chr12_133140099_+ | SINE | Alu | AluJb |
CAediting_950338 | chr12_133140105_+ | SINE | Alu | AluJb |
CAediting_950339 | chr12_133140118_+ | SINE | Alu | AluJb |
CAediting_950340 | chr12_133140187_+ | SINE | Alu | AluJb |
CAediting_950341 | chr12_133140283_+ | SINE | Alu | AluJr4 |
CAediting_950342 | chr12_133140287_+ | SINE | Alu | AluJr4 |
CAediting_950343 | chr12_133140391_+ | SINE | Alu | AluJr4 |
CAediting_950344 | chr12_133140392_+ | SINE | Alu | AluJr4 |
CAediting_950345 | chr12_133142392_+ | SINE | Alu | AluSx3 |
CAediting_950346 | chr12_133146696_+ | SINE | Alu | AluSx1 |
CAediting_950347 | chr12_133149631_+ | SINE | Alu | AluJb |
CAediting_950349 | chr12_133159133_+ | SINE | MIR | MIR |
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RNA A-to-I editing events in the alternative splicing sites for ZNF10 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZNF10 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for ZNF10 |
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The effects of the RNA editing to the miRNA binding sites for ZNF10 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_950349 | chr12_133159133_+ | ENSG00000256223.4 | ENST00000248211 | hsa-miR-7159-3p | 133159128 | 133159134 | 7mer-m8 | 133159117 | 133159135 | 153.00 | -9.82 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_950349 | chr12_133159133_+ | ENSG00000256223.4 | ENST00000248211 | hsa-miR-130a-5p | 133159131 | 133159137 | 7mer-m8 | 133159117 | 133159138 | 141 | -11.03 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_688080 | chr9_63819626_+ | ENSG00000256223.4 | ENST00000248211 | hsa-miR-4477b | 133159048 | 133159054 | 7mer-m8 | 133159034 | 133159055 | 152 | -11.26 |
CAediting_1160181 | chr17_7017644_- | ENSG00000256223.4 | ENST00000248211 | hsa-miR-195-3p | 133159020 | 133159026 | 7mer-m8 | 133159006 | 133159027 | 148 | -13.89 |
CAediting_1160181 | chr17_7017644_- | ENSG00000256223.4 | ENST00000248211 | hsa-miR-195-3p | 133157876 | 133157882 | 7mer-m8 | 133157862 | 133157883 | 148 | -14.81 |
CAediting_1351755 | chr19_40282625_- | ENSG00000256223.4 | ENST00000248211 | hsa-miR-641 | 133157404 | 133157410 | 7mer-m8 | 133157388 | 133157411 | 157 | -20.89 |
CAediting_1399425 | chr20_1392958_- | ENSG00000256223.4 | ENST00000248211 | hsa-miR-6869-5p | 133158062 | 133158068 | 7mer-m8 | 133158048 | 133158069 | 150 | -16.73 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1160181 | chr17_7017644_- | ENSG00000256223.4 | ENST00000248211 | hsa-miR-195-3p | 133158277 | 133158283 | 7mer-m8 | 133158263 | 133158284 | 141 | -6.26 |
CAediting_1160181 | chr17_7017644_- | ENSG00000256223.4 | ENST00000248211 | hsa-miR-195-3p | 133157685 | 133157691 | 7mer-m8 | 133157671 | 133157692 | 140 | -5.99 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000256223.4 | ENST00000248211 | hsa-miR-548aa | 133158371 | 133158377 | 7mer-m8 | 133158353 | 133158378 | 149 | -8.63 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000256223.4 | ENST00000248211 | hsa-miR-548aa | 133158975 | 133158981 | 7mer-m8 | 133158958 | 133158982 | 140 | -6.66 |
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The effects of the RNA editing to the stability of the RNA structures for ZNF10 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for ZNF10 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for ZNF10 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for ZNF10 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for ZNF10 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ZNF10 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |