CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ZNF7 (CAeditome ID:7553)

Gene summary for ZNF7

check button Gene summary
Gene informationGene symbol

ZNF7

Gene ID

7553

Gene namezinc finger protein 7
SynonymsHF.16|KOX4|zf30
Cytomap

8q24.3

Type of geneprotein-coding
Descriptionzinc finger protein 7C2-H2 type zinc finger proteinZinc finger protein-7 (KOX4)zinc finger protein 7 (KOX 4, clone HF.16)zinc finger protein HF.16zinc finger protein KOX4zinc finger protein zfp30
Modification date20210518
UniProtAcc

P17097

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

Top

RNA A-to-I events for ZNF7

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000147789.14

check button RNA A-to-I editing events in Cancer.
CAediting_672754(144831636, +), CAediting_672755(144832585, +), CAediting_672756(144832608, +), CAediting_672757(144832621, +), CAediting_672758(144832660, +), CAediting_672759(144832683, +), CAediting_672760(144832685, +), CAediting_672761(144832918, +), CAediting_672762(144833091, +), CAediting_672763(144833094, +), CAediting_672764(144833110, +), CAediting_672765(144833143, +), CAediting_672766(144833148, +), CAediting_672767(144833393, +), CAediting_672768(144833824, +), CAediting_672769(144833881, +), CAediting_672770(144833897, +), CAediting_672771(144833906, +), CAediting_672772(144833909, +), CAediting_672773(144833919, +), CAediting_672774(144833925, +), CAediting_672775(144833959, +), CAediting_672776(144833970, +), CAediting_672777(144833977, +), CAediting_672778(144833989, +), CAediting_672779(144835252, +), CAediting_672780(144835257, +), CAediting_672781(144835316, +), CAediting_672782(144835333, +), CAediting_672783(144835356, +), CAediting_672784(144835417, +), CAediting_672785(144835424, +), CAediting_672786(144835476, +), CAediting_672787(144835792, +), CAediting_672788(144835797, +), CAediting_672789(144835798, +), CAediting_672790(144835841, +), CAediting_672791(144835874, +), CAediting_672792(144836074, +), CAediting_672793(144836090, +), CAediting_672794(144836091, +), CAediting_672795(144836100, +), CAediting_672796(144836104, +), CAediting_672797(144836131, +), CAediting_672798(144836150, +), CAediting_672799(144836164, +), CAediting_672800(144836215, +), CAediting_672801(144836239, +), CAediting_672802(144838693, +), CAediting_672803(144838697, +), CAediting_672804(144838704, +), CAediting_672805(144838710, +), CAediting_672806(144838723, +), CAediting_672807(144838745, +), CAediting_672808(144838796, +), CAediting_672809(144838821, +), CAediting_672810(144838827, +), CAediting_672811(144838831, +), CAediting_672812(144838887, +), CAediting_672813(144839950, +), CAediting_672814(144839978, +), CAediting_672815(144839996, +), CAediting_672816(144840009, +), CAediting_672817(144840028, +), CAediting_672818(144840035, +), CAediting_672819(144840052, +), CAediting_672820(144840060, +), CAediting_672821(144840064, +),

Top

RNA editing positional annotations for ZNF7 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_672754chr8_144831636_+ncRNA_intronic
CAediting_672755chr8_144832585_+ncRNA_intronic
CAediting_672756chr8_144832608_+ncRNA_intronic
CAediting_672757chr8_144832621_+ncRNA_intronic
CAediting_672758chr8_144832660_+ncRNA_intronic
CAediting_672759chr8_144832683_+ncRNA_intronic
CAediting_672760chr8_144832685_+ncRNA_intronic
CAediting_672761chr8_144832918_+ncRNA_intronic
CAediting_672762chr8_144833091_+ncRNA_intronic
CAediting_672763chr8_144833094_+ncRNA_intronic
CAediting_672764chr8_144833110_+ncRNA_intronic
CAediting_672765chr8_144833143_+ncRNA_intronic
CAediting_672766chr8_144833148_+ncRNA_intronic
CAediting_672767chr8_144833393_+ncRNA_intronic
CAediting_672768chr8_144833824_+ncRNA_exonic
CAediting_672769chr8_144833881_+ncRNA_exonic
CAediting_672770chr8_144833897_+ncRNA_exonic
CAediting_672771chr8_144833906_+ncRNA_exonic
CAediting_672772chr8_144833909_+ncRNA_exonic
CAediting_672773chr8_144833919_+ncRNA_exonic
CAediting_672774chr8_144833925_+ncRNA_exonic
CAediting_672775chr8_144833959_+ncRNA_exonic
CAediting_672776chr8_144833970_+ncRNA_exonic
CAediting_672777chr8_144833977_+ncRNA_exonic
CAediting_672778chr8_144833989_+ncRNA_exonic
CAediting_672779chr8_144835252_+ncRNA_exonic
CAediting_672780chr8_144835257_+ncRNA_exonic
CAediting_672781chr8_144835316_+ncRNA_exonic
CAediting_672782chr8_144835333_+ncRNA_exonic
CAediting_672783chr8_144835356_+ncRNA_exonic
CAediting_672784chr8_144835417_+ncRNA_exonic
CAediting_672785chr8_144835424_+ncRNA_exonic
CAediting_672786chr8_144835476_+ncRNA_exonic
CAediting_672787chr8_144835792_+ncRNA_exonic
CAediting_672788chr8_144835797_+ncRNA_exonic
CAediting_672789chr8_144835798_+ncRNA_exonic
CAediting_672790chr8_144835841_+ncRNA_exonic
CAediting_672791chr8_144835874_+ncRNA_exonic
CAediting_672792chr8_144836074_+ncRNA_exonic
CAediting_672793chr8_144836090_+ncRNA_exonic
CAediting_672794chr8_144836091_+ncRNA_exonic
CAediting_672795chr8_144836100_+ncRNA_exonic
CAediting_672796chr8_144836104_+ncRNA_exonic
CAediting_672797chr8_144836131_+ncRNA_exonic
CAediting_672798chr8_144836150_+ncRNA_exonic
CAediting_672799chr8_144836164_+ncRNA_exonic
CAediting_672800chr8_144836215_+ncRNA_exonic
CAediting_672801chr8_144836239_+ncRNA_exonic
CAediting_672802chr8_144838693_+ncRNA_intronic
CAediting_672803chr8_144838697_+ncRNA_intronic
CAediting_672804chr8_144838704_+ncRNA_intronic
CAediting_672805chr8_144838710_+ncRNA_intronic
CAediting_672806chr8_144838723_+ncRNA_intronic
CAediting_672807chr8_144838745_+ncRNA_intronic
CAediting_672808chr8_144838796_+ncRNA_intronic
CAediting_672809chr8_144838821_+ncRNA_intronic
CAediting_672810chr8_144838827_+ncRNA_intronic
CAediting_672811chr8_144838831_+ncRNA_intronic
CAediting_672812chr8_144838887_+ncRNA_intronic
CAediting_672813chr8_144839950_+ncRNA_intronic
CAediting_672814chr8_144839978_+ncRNA_intronic
CAediting_672815chr8_144839996_+ncRNA_intronic
CAediting_672816chr8_144840009_+ncRNA_intronic
CAediting_672817chr8_144840028_+ncRNA_intronic
CAediting_672818chr8_144840035_+ncRNA_intronic
CAediting_672819chr8_144840052_+ncRNA_intronic
CAediting_672820chr8_144840060_+ncRNA_intronic
CAediting_672821chr8_144840064_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_672754chr8_144831636_+SINEAluAluSg
CAediting_672755chr8_144832585_+SINEAluAluSx1
CAediting_672756chr8_144832608_+SINEAluAluSx1
CAediting_672757chr8_144832621_+SINEAluAluSx1
CAediting_672758chr8_144832660_+SINEAluAluSx1
CAediting_672759chr8_144832683_+SINEAluAluSx1
CAediting_672760chr8_144832685_+SINEAluAluSx1
CAediting_672761chr8_144832918_+SINEAluAluSx
CAediting_672762chr8_144833091_+SINEAluAluSx
CAediting_672763chr8_144833094_+SINEAluAluSx
CAediting_672764chr8_144833110_+SINEAluAluSx
CAediting_672765chr8_144833143_+SINEAluAluSx
CAediting_672766chr8_144833148_+SINEAluAluSx
CAediting_672767chr8_144833393_+SINEAluAluSz6
CAediting_672768chr8_144833824_+SINEAluAluSq2
CAediting_672769chr8_144833881_+SINEAluAluSq2
CAediting_672770chr8_144833897_+SINEAluAluSq2
CAediting_672771chr8_144833906_+SINEAluAluSq2
CAediting_672772chr8_144833909_+SINEAluAluSq2
CAediting_672773chr8_144833919_+SINEAluAluSq2
CAediting_672774chr8_144833925_+SINEAluAluSq2
CAediting_672775chr8_144833959_+SINEAluAluSq2
CAediting_672776chr8_144833970_+SINEAluAluSq2
CAediting_672777chr8_144833977_+SINEAluAluSq2
CAediting_672778chr8_144833989_+SINEAluAluSq2
CAediting_672779chr8_144835252_+SINEAluAluJr
CAediting_672780chr8_144835257_+SINEAluAluJr
CAediting_672781chr8_144835316_+SINEAluAluJr
CAediting_672782chr8_144835333_+SINEAluAluJr
CAediting_672783chr8_144835356_+SINEAluAluJr
CAediting_672784chr8_144835417_+SINEAluAluJr
CAediting_672785chr8_144835424_+SINEAluAluJr
CAediting_672786chr8_144835476_+SINEAluAluJr
CAediting_672787chr8_144835792_+SINEAluAluJb
CAediting_672788chr8_144835797_+SINEAluAluJb
CAediting_672789chr8_144835798_+SINEAluAluJb
CAediting_672790chr8_144835841_+SINEAluAluJb
CAediting_672791chr8_144835874_+SINEAluAluSx
CAediting_672792chr8_144836074_+SINEAluAluJr4
CAediting_672793chr8_144836090_+SINEAluAluJr4
CAediting_672794chr8_144836091_+SINEAluAluJr4
CAediting_672795chr8_144836100_+SINEAluAluJr4
CAediting_672796chr8_144836104_+SINEAluAluJr4
CAediting_672797chr8_144836131_+SINEAluAluJr4
CAediting_672798chr8_144836150_+SINEAluAluJr4
CAediting_672799chr8_144836164_+SINEAluAluJr4
CAediting_672800chr8_144836215_+SINEAluAluJr4
CAediting_672801chr8_144836239_+SINEAluAluJr4
CAediting_672802chr8_144838693_+SINEAluAluY
CAediting_672803chr8_144838697_+SINEAluAluY
CAediting_672804chr8_144838704_+SINEAluAluY
CAediting_672805chr8_144838710_+SINEAluAluY
CAediting_672806chr8_144838723_+SINEAluAluY
CAediting_672807chr8_144838745_+SINEAluAluY
CAediting_672808chr8_144838796_+SINEAluAluY
CAediting_672809chr8_144838821_+SINEAluAluY
CAediting_672810chr8_144838827_+SINEAluAluY
CAediting_672811chr8_144838831_+SINEAluAluY
CAediting_672812chr8_144838887_+SINEAluAluY
CAediting_672813chr8_144839950_+SINEAluAluSz6
CAediting_672814chr8_144839978_+SINEAluAluSz6
CAediting_672815chr8_144839996_+SINEAluAluSz6
CAediting_672816chr8_144840009_+SINEAluAluSz6
CAediting_672817chr8_144840028_+SINEAluAluSz6
CAediting_672818chr8_144840035_+SINEAluAluSz6
CAediting_672819chr8_144840052_+SINEAluAluSz6
CAediting_672820chr8_144840060_+SINEAluAluSz6
CAediting_672821chr8_144840064_+SINEAluAluSz6

Top

RNA A-to-I editing events in the alternative splicing sites for ZNF7

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000147789.14.ZNF7.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000147789.14.ZNF7.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZNF7

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for ZNF7

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for ZNF7

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_672809chr8_144838821_+ENSG00000147789.14ENST00000528130hsa-miR-140-3p1448388161448388227mer-m8144838800144838823149.00-28.29
CAediting_672809chr8_144838821_+ENSG00000147789.14ENST00000528130hsa-miR-3619-3p1448388191448388246mer144838803144838825143.00-30.49
CAediting_672804chr8_144838704_+ENSG00000147789.14ENST00000528130hsa-miR-10392-3p1448387021448387098mer-1a144838686144838709142.00-23.43
CAediting_672805chr8_144838710_+ENSG00000147789.14ENST00000528130hsa-miR-4707-5p1448387051448387117mer-m8144838690144838712142.00-26.27
CAediting_672806chr8_144838723_+ENSG00000147789.14ENST00000528130hsa-miR-10401-3p1448387221448387276mer144838709144838728141.00-37.40
CAediting_672806chr8_144838723_+ENSG00000147789.14ENST00000528130hsa-miR-10401-3p1448387221448387276mer144838709144838728141.00-37.40
CAediting_672806chr8_144838723_+ENSG00000147789.14ENST00000528130hsa-miR-10401-3p1448387221448387276mer144838709144838728141.00-37.40
CAediting_672806chr8_144838723_+ENSG00000147789.14ENST00000528130hsa-miR-10401-3p1448387221448387276mer144838709144838728141.00-37.40
CAediting_672808chr8_144838796_+ENSG00000147789.14ENST00000528130hsa-miR-4735-5p1448387891448387957mer-m8144838775144838796140.00-4.28
CAediting_672808chr8_144838796_+ENSG00000147789.14ENST00000528130hsa-miR-47941448387931448387997mer-m8144838779144838800140.00-12.30
CAediting_672808chr8_144838796_+ENSG00000147789.14ENST00000528130hsa-miR-664a-5p1448387931448387997mer-m8144838777144838800141.00-13.40
CAediting_672811chr8_144838831_+ENSG00000147789.14ENST00000528130hsa-miR-1207-3p1448388241448388307mer-m8144838813144838831145.00-13.53
CAediting_672811chr8_144838831_+ENSG00000147789.14ENST00000528130hsa-miR-6461448388261448388327mer-m8144838814144838833148.00-21.05

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_672807chr8_144838745_+ENSG00000147789.14ENST00000528130hsa-miR-11931448387411448387477mer-m8144838723144838748143-20.63
CAediting_672804chr8_144838704_+ENSG00000147789.14ENST00000528130hsa-miR-150-5p1448386981448387047mer-m8144838682144838705143-16.17
CAediting_672807chr8_144838745_+ENSG00000147789.14ENST00000528130hsa-miR-23921448387421448387487mer-m8144838730144838749142-17.64
CAediting_672804chr8_144838704_+ENSG00000147789.14ENST00000528130hsa-miR-6778-3p1448387001448387067mer-m8144838687144838707143-13.81
CAediting_672807chr8_144838745_+ENSG00000147789.14ENST00000528130hsa-miR-6843-3p1448387381448387447mer-m8144838727144838745150-20.32
CAediting_672807chr8_144838745_+ENSG00000147789.14ENST00000528130hsa-miR-6848-3p1448387381448387447mer-m8144838729144838745142-15.23
CAediting_672809chr8_144838821_+ENSG00000147789.14ENST00000528130hsa-miR-7151-3p1448388141448388207mer-m8144838801144838821140-16.94
CAediting_672809chr8_144838821_+ENSG00000147789.14ENST00000528130hsa-miR-80521448388201448388267mer-1a144838806144838826145-22.32

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000147789.14ENST00000525266hsa-miR-605-3p1448465341448465407mer-m8144846520144846541155-14.51
CAediting_688081chr9_63819627_+ENSG00000147789.14ENST00000525266hsa-miR-4477b1448469531448469597mer-m8144846939144846960140-11.37
CAediting_980496chr14_31014685_-ENSG00000147789.14ENST00000528130hsa-miR-624-3p1448387641448387707mer-m8144838749144838771148-18.33
CAediting_1229413chr17_67471544_+ENSG00000147789.14ENST00000525266hsa-miR-548aa1448465781448465847mer-m8144846561144846585147-13.81
CAediting_524911chr7_5495852_-ENSG00000147789.14ENST00000528130hsa-miR-589-3p1448384311448384377mer-m8144838414144838438160-25

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for ZNF7

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for ZNF7

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

Top

Relation with cancer stages for ZNF7

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

Top

Relation with survival for ZNF7

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for ZNF7

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for ZNF7

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource