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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: USP1 (CAeditome ID:7398) |
Gene summary for USP1 |
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Gene information | Gene symbol | USP1 | Gene ID | 7398 |
Gene name | ubiquitin specific peptidase 1 | |
Synonyms | UBP | |
Cytomap | 1p31.3 | |
Type of gene | protein-coding | |
Description | ubiquitin carboxyl-terminal hydrolase 1Ubiquitinyl hydrolase 1, Ubiquitin carboxyl-terminal hydrolase 1, ubiquitin thiolesterase 1deubiquitinating enzyme 1hUBPubiquitin specific processing protease 1ubiquitin specific protease 1ubiquitin thioesteras | |
Modification date | 20210518 | |
UniProtAcc | O94782 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
USP1 | GO:0004843 | Ubiquitin carboxyl-terminal hydrolase 1 | 18082604 |
USP1 | GO:0006282 | Ubiquitin carboxyl-terminal hydrolase 1 | 18082604 |
USP1 | GO:0009411 | Ubiquitin carboxyl-terminal hydrolase 1 | 18082604 |
USP1 | GO:0016579 | Ubiquitin carboxyl-terminal hydrolase 1 | 18082604 |
USP1 | GO:0005634 | Ubiquitin carboxyl-terminal hydrolase 1 | 0000054 |
USP1 | GO:0005634 | Ubiquitin carboxyl-terminal hydrolase 1 | 18082604 |
USP1 | GO:0005654 | Ubiquitin carboxyl-terminal hydrolase 1 | 0000052 |
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RNA A-to-I events for USP1 |
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CAediting_71546(62448903, +), CAediting_71547(62448944, +), CAediting_71548(62448946, +), CAediting_71549(62448952, +), CAediting_71550(62448976, +), CAediting_71551(62448982, +), CAediting_71552(62448995, +), CAediting_71553(62449000, +), CAediting_71554(62449009, +), CAediting_71555(62449012, +), CAediting_71556(62449022, +), CAediting_71557(62449024, +), CAediting_71558(62449044, +), CAediting_71559(62449048, +), CAediting_71560(62449049, +), CAediting_71561(62449058, +), CAediting_71562(62449064, +), CAediting_71563(62449081, +), CAediting_71564(62449084, +), CAediting_71565(62449093, +), CAediting_71566(62449099, +), CAediting_71567(62449105, +), CAediting_71568(62449106, +), CAediting_71569(62449119, +), CAediting_71570(62449122, +), CAediting_71571(62449136, +), CAediting_71572(62449144, +), CAediting_71573(62449145, +), CAediting_71574(62449146, +), CAediting_71575(62449158, +), CAediting_71576(62449652, +), CAediting_71577(62449660, +), CAediting_71578(62449661, +), CAediting_71579(62449669, +), CAediting_71580(62449698, +), CAediting_71581(62449702, +), CAediting_71582(62449710, +), CAediting_71583(62449711, +), CAediting_71584(62449716, +), CAediting_71585(62449726, +), CAediting_71586(62449728, +), CAediting_71587(62449731, +), CAediting_71588(62449733, +), CAediting_71589(62449734, +), CAediting_71590(62449741, +), CAediting_71591(62449747, +), CAediting_71592(62449749, +), CAediting_71593(62449750, +), CAediting_71594(62449751, +), CAediting_71595(62449752, +), CAediting_71596(62449753, +), CAediting_71597(62449754, +), CAediting_71598(62449756, +), CAediting_71599(62449760, +), CAediting_71600(62449761, +), CAediting_71601(62449765, +), CAediting_71602(62449785, +), CAediting_71603(62449797, +), CAediting_71604(62449805, +), CAediting_71605(62449814, +), CAediting_71606(62449817, +), CAediting_71607(62449852, +), CAediting_71608(62449870, +), |
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RNA editing positional annotations for USP1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_71546 | chr1_62448903_+ | intronic |
CAediting_71547 | chr1_62448944_+ | intronic |
CAediting_71548 | chr1_62448946_+ | intronic |
CAediting_71549 | chr1_62448952_+ | intronic |
CAediting_71550 | chr1_62448976_+ | intronic |
CAediting_71551 | chr1_62448982_+ | intronic |
CAediting_71552 | chr1_62448995_+ | intronic |
CAediting_71553 | chr1_62449000_+ | intronic |
CAediting_71554 | chr1_62449009_+ | intronic |
CAediting_71555 | chr1_62449012_+ | intronic |
CAediting_71556 | chr1_62449022_+ | intronic |
CAediting_71557 | chr1_62449024_+ | intronic |
CAediting_71558 | chr1_62449044_+ | intronic |
CAediting_71559 | chr1_62449048_+ | intronic |
CAediting_71560 | chr1_62449049_+ | intronic |
CAediting_71561 | chr1_62449058_+ | intronic |
CAediting_71562 | chr1_62449064_+ | intronic |
CAediting_71563 | chr1_62449081_+ | intronic |
CAediting_71564 | chr1_62449084_+ | intronic |
CAediting_71565 | chr1_62449093_+ | intronic |
CAediting_71566 | chr1_62449099_+ | intronic |
CAediting_71567 | chr1_62449105_+ | intronic |
CAediting_71568 | chr1_62449106_+ | intronic |
CAediting_71569 | chr1_62449119_+ | intronic |
CAediting_71570 | chr1_62449122_+ | intronic |
CAediting_71571 | chr1_62449136_+ | intronic |
CAediting_71572 | chr1_62449144_+ | intronic |
CAediting_71573 | chr1_62449145_+ | intronic |
CAediting_71574 | chr1_62449146_+ | intronic |
CAediting_71575 | chr1_62449158_+ | intronic |
CAediting_71576 | chr1_62449652_+ | intronic |
CAediting_71577 | chr1_62449660_+ | intronic |
CAediting_71578 | chr1_62449661_+ | intronic |
CAediting_71579 | chr1_62449669_+ | intronic |
CAediting_71580 | chr1_62449698_+ | intronic |
CAediting_71581 | chr1_62449702_+ | intronic |
CAediting_71582 | chr1_62449710_+ | intronic |
CAediting_71583 | chr1_62449711_+ | intronic |
CAediting_71584 | chr1_62449716_+ | intronic |
CAediting_71585 | chr1_62449726_+ | intronic |
CAediting_71586 | chr1_62449728_+ | intronic |
CAediting_71587 | chr1_62449731_+ | intronic |
CAediting_71588 | chr1_62449733_+ | intronic |
CAediting_71589 | chr1_62449734_+ | intronic |
CAediting_71590 | chr1_62449741_+ | intronic |
CAediting_71591 | chr1_62449747_+ | intronic |
CAediting_71592 | chr1_62449749_+ | intronic |
CAediting_71593 | chr1_62449750_+ | intronic |
CAediting_71594 | chr1_62449751_+ | intronic |
CAediting_71595 | chr1_62449752_+ | intronic |
CAediting_71596 | chr1_62449753_+ | intronic |
CAediting_71597 | chr1_62449754_+ | intronic |
CAediting_71598 | chr1_62449756_+ | intronic |
CAediting_71599 | chr1_62449760_+ | intronic |
CAediting_71600 | chr1_62449761_+ | intronic |
CAediting_71601 | chr1_62449765_+ | intronic |
CAediting_71602 | chr1_62449785_+ | intronic |
CAediting_71603 | chr1_62449797_+ | intronic |
CAediting_71604 | chr1_62449805_+ | intronic |
CAediting_71605 | chr1_62449814_+ | intronic |
CAediting_71606 | chr1_62449817_+ | intronic |
CAediting_71607 | chr1_62449852_+ | intronic |
CAediting_71608 | chr1_62449870_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_71546 | chr1_62448903_+ | SINE | Alu | AluJb |
CAediting_71547 | chr1_62448944_+ | SINE | Alu | AluJb |
CAediting_71548 | chr1_62448946_+ | SINE | Alu | AluJb |
CAediting_71549 | chr1_62448952_+ | SINE | Alu | AluJb |
CAediting_71550 | chr1_62448976_+ | SINE | Alu | AluJb |
CAediting_71551 | chr1_62448982_+ | SINE | Alu | AluJb |
CAediting_71552 | chr1_62448995_+ | SINE | Alu | AluJb |
CAediting_71553 | chr1_62449000_+ | SINE | Alu | AluJb |
CAediting_71554 | chr1_62449009_+ | SINE | Alu | AluJb |
CAediting_71555 | chr1_62449012_+ | SINE | Alu | AluJb |
CAediting_71556 | chr1_62449022_+ | SINE | Alu | AluJb |
CAediting_71557 | chr1_62449024_+ | SINE | Alu | AluJb |
CAediting_71558 | chr1_62449044_+ | SINE | Alu | AluJb |
CAediting_71559 | chr1_62449048_+ | SINE | Alu | AluJb |
CAediting_71560 | chr1_62449049_+ | SINE | Alu | AluJb |
CAediting_71561 | chr1_62449058_+ | SINE | Alu | AluJb |
CAediting_71562 | chr1_62449064_+ | SINE | Alu | AluJb |
CAediting_71563 | chr1_62449081_+ | SINE | Alu | AluJb |
CAediting_71564 | chr1_62449084_+ | SINE | Alu | AluJb |
CAediting_71565 | chr1_62449093_+ | SINE | Alu | AluJb |
CAediting_71566 | chr1_62449099_+ | SINE | Alu | AluJb |
CAediting_71567 | chr1_62449105_+ | SINE | Alu | AluJb |
CAediting_71568 | chr1_62449106_+ | SINE | Alu | AluJb |
CAediting_71569 | chr1_62449119_+ | SINE | Alu | AluJb |
CAediting_71570 | chr1_62449122_+ | SINE | Alu | AluJb |
CAediting_71571 | chr1_62449136_+ | SINE | Alu | AluJb |
CAediting_71572 | chr1_62449144_+ | SINE | Alu | AluJb |
CAediting_71573 | chr1_62449145_+ | SINE | Alu | AluJb |
CAediting_71574 | chr1_62449146_+ | SINE | Alu | AluJb |
CAediting_71575 | chr1_62449158_+ | SINE | Alu | AluJb |
CAediting_71576 | chr1_62449652_+ | SINE | Alu | AluJb |
CAediting_71577 | chr1_62449660_+ | SINE | Alu | AluJb |
CAediting_71578 | chr1_62449661_+ | SINE | Alu | AluJb |
CAediting_71579 | chr1_62449669_+ | SINE | Alu | AluJb |
CAediting_71580 | chr1_62449698_+ | SINE | Alu | AluJb |
CAediting_71581 | chr1_62449702_+ | SINE | Alu | AluJb |
CAediting_71582 | chr1_62449710_+ | SINE | Alu | AluJb |
CAediting_71583 | chr1_62449711_+ | SINE | Alu | AluJb |
CAediting_71584 | chr1_62449716_+ | SINE | Alu | AluJb |
CAediting_71585 | chr1_62449726_+ | SINE | Alu | AluJb |
CAediting_71586 | chr1_62449728_+ | SINE | Alu | AluJb |
CAediting_71587 | chr1_62449731_+ | SINE | Alu | AluJb |
CAediting_71588 | chr1_62449733_+ | SINE | Alu | AluJb |
CAediting_71589 | chr1_62449734_+ | SINE | Alu | AluJb |
CAediting_71590 | chr1_62449741_+ | SINE | Alu | AluJb |
CAediting_71591 | chr1_62449747_+ | SINE | Alu | AluJb |
CAediting_71592 | chr1_62449749_+ | SINE | Alu | AluJb |
CAediting_71593 | chr1_62449750_+ | SINE | Alu | AluJb |
CAediting_71594 | chr1_62449751_+ | SINE | Alu | AluJb |
CAediting_71595 | chr1_62449752_+ | SINE | Alu | AluJb |
CAediting_71596 | chr1_62449753_+ | SINE | Alu | AluJb |
CAediting_71597 | chr1_62449754_+ | SINE | Alu | AluJb |
CAediting_71598 | chr1_62449756_+ | SINE | Alu | AluJb |
CAediting_71599 | chr1_62449760_+ | SINE | Alu | AluJb |
CAediting_71600 | chr1_62449761_+ | SINE | Alu | AluJb |
CAediting_71601 | chr1_62449765_+ | SINE | Alu | AluJb |
CAediting_71602 | chr1_62449785_+ | SINE | Alu | AluJb |
CAediting_71603 | chr1_62449797_+ | SINE | Alu | AluJb |
CAediting_71604 | chr1_62449805_+ | SINE | Alu | AluJb |
CAediting_71605 | chr1_62449814_+ | SINE | Alu | AluJb |
CAediting_71606 | chr1_62449817_+ | SINE | Alu | AluJb |
CAediting_71607 | chr1_62449852_+ | SINE | Alu | AluJb |
CAediting_71608 | chr1_62449870_+ | SINE | Alu | AluJb |
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RNA A-to-I editing events in the alternative splicing sites for USP1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for USP1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for USP1 |
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The effects of the RNA editing to the miRNA binding sites for USP1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1160181 | chr17_7017644_- | ENSG00000162607.11 | ENST00000371146 | hsa-miR-195-3p | 62451025 | 62451031 | 7mer-m8 | 62451012 | 62451032 | 149 | -18.24 |
CAediting_1160181 | chr17_7017644_- | ENSG00000162607.11 | ENST00000339950 | hsa-miR-195-3p | 62451025 | 62451031 | 7mer-m8 | 62451012 | 62451032 | 149 | -18.24 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for USP1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for USP1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_71601 | chr1_62449765_+ | 4.11505737530641e-11 | 0.510125913485999 | . | . | . | . |
OV | CAediting_71601 | chr1_62449765_+ | 0.0139297156460422 | 0.259840283129178 | . | . | . | . |
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Relation with cancer stages for USP1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_71574 | chr1_62449146_+ | 0.000387132613597346 | 0.412523063831087 |
OV | clinical_stage | CAediting_71590 | chr1_62449741_+ | 0.025600653187011 | -0.272650424120098 |
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Relation with survival for USP1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for USP1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for USP1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |