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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: USF2 (CAeditome ID:7392) |
Gene summary for USF2 |
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Gene information | Gene symbol | USF2 | Gene ID | 7392 |
Gene name | upstream transcription factor 2, c-fos interacting | |
Synonyms | FIP|bHLHb12 | |
Cytomap | 19q13.12 | |
Type of gene | protein-coding | |
Description | upstream stimulatory factor 2c-fos interacting proteinclass B basic helix-loop-helix protein 12major late transcription factor 2 | |
Modification date | 20210518 | |
UniProtAcc | Q15853 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
USF2 | GO:0043565 | Upstream stimulatory factor 2 | 8576131 |
USF2 | GO:1990837 | Upstream stimulatory factor 2 | 28473536 |
USF2 | GO:0005634 | Upstream stimulatory factor 2 | 15358760 |
USF2 | GO:0005634 | Upstream stimulatory factor 2 | 8576131 |
USF2 | GO:0005654 | Upstream stimulatory factor 2 | 0000052 |
USF2 | GO:0043231 | Upstream stimulatory factor 2 | 0000052 |
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RNA A-to-I events for USF2 |
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CAediting_1338135(35273601, +), CAediting_1338136(35273611, +), CAediting_1338137(35273632, +), CAediting_1338138(35273644, +), CAediting_1338139(35273651, +), CAediting_1338140(35273657, +), CAediting_1338141(35273658, +), CAediting_1338142(35273662, +), CAediting_1338143(35273670, +), CAediting_1338144(35273675, +), CAediting_1338145(35273694, +), CAediting_1338146(35273699, +), CAediting_1338147(35273703, +), CAediting_1338148(35273765, +), CAediting_1338149(35273794, +), CAediting_1338150(35274568, +), CAediting_1338151(35274571, +), CAediting_1338152(35274582, +), CAediting_1338153(35274587, +), CAediting_1338154(35274592, +), CAediting_1338155(35274595, +), CAediting_1338156(35274611, +), CAediting_1338157(35274637, +), CAediting_1338158(35274641, +), CAediting_1338159(35274642, +), CAediting_1338160(35274644, +), CAediting_1338161(35274645, +), CAediting_1338162(35274651, +), CAediting_1338163(35274652, +), CAediting_1338164(35274653, +), CAediting_1338165(35274656, +), CAediting_1338166(35274660, +), CAediting_1338167(35274672, +), CAediting_1338168(35274703, +), CAediting_1338169(35274715, +), CAediting_1338170(35274716, +), CAediting_1338171(35274726, +), CAediting_1338172(35275110, +), CAediting_1338173(35275111, +), CAediting_1338174(35275116, +), CAediting_1338175(35275147, +), CAediting_1338176(35275164, +), CAediting_1338177(35275188, +), CAediting_1338178(35275204, +), CAediting_1338179(35275212, +), CAediting_1338180(35275269, +), CAediting_1338181(35275281, +), CAediting_1338182(35275290, +), CAediting_1338183(35275309, +), CAediting_1338184(35276197, +), CAediting_1338185(35276252, +), CAediting_1338186(35276255, +), |
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RNA editing positional annotations for USF2 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1338135 | chr19_35273601_+ | ncRNA_intronic |
CAediting_1338136 | chr19_35273611_+ | ncRNA_intronic |
CAediting_1338137 | chr19_35273632_+ | ncRNA_intronic |
CAediting_1338138 | chr19_35273644_+ | ncRNA_intronic |
CAediting_1338139 | chr19_35273651_+ | ncRNA_intronic |
CAediting_1338140 | chr19_35273657_+ | ncRNA_intronic |
CAediting_1338141 | chr19_35273658_+ | ncRNA_intronic |
CAediting_1338142 | chr19_35273662_+ | ncRNA_intronic |
CAediting_1338143 | chr19_35273670_+ | ncRNA_intronic |
CAediting_1338144 | chr19_35273675_+ | ncRNA_intronic |
CAediting_1338145 | chr19_35273694_+ | ncRNA_intronic |
CAediting_1338146 | chr19_35273699_+ | ncRNA_intronic |
CAediting_1338147 | chr19_35273703_+ | ncRNA_intronic |
CAediting_1338148 | chr19_35273765_+ | ncRNA_intronic |
CAediting_1338149 | chr19_35273794_+ | ncRNA_intronic |
CAediting_1338150 | chr19_35274568_+ | ncRNA_intronic |
CAediting_1338151 | chr19_35274571_+ | ncRNA_intronic |
CAediting_1338152 | chr19_35274582_+ | ncRNA_intronic |
CAediting_1338153 | chr19_35274587_+ | ncRNA_intronic |
CAediting_1338154 | chr19_35274592_+ | ncRNA_intronic |
CAediting_1338155 | chr19_35274595_+ | ncRNA_intronic |
CAediting_1338156 | chr19_35274611_+ | ncRNA_intronic |
CAediting_1338157 | chr19_35274637_+ | ncRNA_intronic |
CAediting_1338158 | chr19_35274641_+ | ncRNA_intronic |
CAediting_1338159 | chr19_35274642_+ | ncRNA_intronic |
CAediting_1338160 | chr19_35274644_+ | ncRNA_intronic |
CAediting_1338161 | chr19_35274645_+ | ncRNA_intronic |
CAediting_1338162 | chr19_35274651_+ | ncRNA_intronic |
CAediting_1338163 | chr19_35274652_+ | ncRNA_intronic |
CAediting_1338164 | chr19_35274653_+ | ncRNA_intronic |
CAediting_1338165 | chr19_35274656_+ | ncRNA_intronic |
CAediting_1338166 | chr19_35274660_+ | ncRNA_intronic |
CAediting_1338167 | chr19_35274672_+ | ncRNA_intronic |
CAediting_1338168 | chr19_35274703_+ | ncRNA_intronic |
CAediting_1338169 | chr19_35274715_+ | ncRNA_intronic |
CAediting_1338170 | chr19_35274716_+ | ncRNA_intronic |
CAediting_1338171 | chr19_35274726_+ | ncRNA_intronic |
CAediting_1338172 | chr19_35275110_+ | ncRNA_exonic |
CAediting_1338173 | chr19_35275111_+ | ncRNA_exonic |
CAediting_1338174 | chr19_35275116_+ | ncRNA_exonic |
CAediting_1338175 | chr19_35275147_+ | ncRNA_exonic |
CAediting_1338176 | chr19_35275164_+ | ncRNA_exonic |
CAediting_1338177 | chr19_35275188_+ | ncRNA_exonic |
CAediting_1338178 | chr19_35275204_+ | ncRNA_exonic |
CAediting_1338179 | chr19_35275212_+ | ncRNA_exonic |
CAediting_1338180 | chr19_35275269_+ | ncRNA_exonic |
CAediting_1338181 | chr19_35275281_+ | ncRNA_exonic |
CAediting_1338182 | chr19_35275290_+ | ncRNA_exonic |
CAediting_1338183 | chr19_35275309_+ | ncRNA_exonic |
CAediting_1338184 | chr19_35276197_+ | ncRNA_intronic |
CAediting_1338185 | chr19_35276252_+ | ncRNA_intronic |
CAediting_1338186 | chr19_35276255_+ | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1338135 | chr19_35273601_+ | SINE | Alu | AluJr |
CAediting_1338136 | chr19_35273611_+ | SINE | Alu | AluJr |
CAediting_1338137 | chr19_35273632_+ | SINE | Alu | AluJr |
CAediting_1338138 | chr19_35273644_+ | SINE | Alu | AluJr |
CAediting_1338139 | chr19_35273651_+ | SINE | Alu | AluJr |
CAediting_1338140 | chr19_35273657_+ | SINE | Alu | AluJr |
CAediting_1338141 | chr19_35273658_+ | SINE | Alu | AluJr |
CAediting_1338142 | chr19_35273662_+ | SINE | Alu | AluJr |
CAediting_1338143 | chr19_35273670_+ | SINE | Alu | AluJr |
CAediting_1338144 | chr19_35273675_+ | SINE | Alu | AluJr |
CAediting_1338145 | chr19_35273694_+ | SINE | Alu | AluJr |
CAediting_1338146 | chr19_35273699_+ | SINE | Alu | AluJr |
CAediting_1338147 | chr19_35273703_+ | SINE | Alu | AluJr |
CAediting_1338148 | chr19_35273765_+ | SINE | Alu | AluJr |
CAediting_1338149 | chr19_35273794_+ | SINE | Alu | AluJr |
CAediting_1338150 | chr19_35274568_+ | SINE | Alu | AluJb |
CAediting_1338151 | chr19_35274571_+ | SINE | Alu | AluJb |
CAediting_1338152 | chr19_35274582_+ | SINE | Alu | AluJb |
CAediting_1338153 | chr19_35274587_+ | SINE | Alu | AluJb |
CAediting_1338154 | chr19_35274592_+ | SINE | Alu | AluJb |
CAediting_1338155 | chr19_35274595_+ | SINE | Alu | AluJb |
CAediting_1338156 | chr19_35274611_+ | SINE | Alu | AluJb |
CAediting_1338157 | chr19_35274637_+ | SINE | Alu | AluJb |
CAediting_1338158 | chr19_35274641_+ | SINE | Alu | AluJb |
CAediting_1338159 | chr19_35274642_+ | SINE | Alu | AluJb |
CAediting_1338160 | chr19_35274644_+ | SINE | Alu | AluJb |
CAediting_1338161 | chr19_35274645_+ | SINE | Alu | AluJb |
CAediting_1338162 | chr19_35274651_+ | SINE | Alu | AluJb |
CAediting_1338163 | chr19_35274652_+ | SINE | Alu | AluJb |
CAediting_1338164 | chr19_35274653_+ | SINE | Alu | AluJb |
CAediting_1338165 | chr19_35274656_+ | SINE | Alu | AluJb |
CAediting_1338166 | chr19_35274660_+ | SINE | Alu | AluJb |
CAediting_1338167 | chr19_35274672_+ | SINE | Alu | AluJb |
CAediting_1338168 | chr19_35274703_+ | SINE | Alu | AluJb |
CAediting_1338169 | chr19_35274715_+ | SINE | Alu | AluJb |
CAediting_1338170 | chr19_35274716_+ | SINE | Alu | AluJb |
CAediting_1338171 | chr19_35274726_+ | SINE | Alu | AluJb |
CAediting_1338172 | chr19_35275110_+ | SINE | Alu | AluSx1 |
CAediting_1338173 | chr19_35275111_+ | SINE | Alu | AluSx1 |
CAediting_1338174 | chr19_35275116_+ | SINE | Alu | AluSx1 |
CAediting_1338175 | chr19_35275147_+ | SINE | Alu | AluSx1 |
CAediting_1338176 | chr19_35275164_+ | SINE | Alu | AluSx1 |
CAediting_1338177 | chr19_35275188_+ | SINE | Alu | AluSx1 |
CAediting_1338178 | chr19_35275204_+ | SINE | Alu | AluSx1 |
CAediting_1338179 | chr19_35275212_+ | SINE | Alu | AluSx1 |
CAediting_1338180 | chr19_35275269_+ | SINE | Alu | AluSx1 |
CAediting_1338181 | chr19_35275281_+ | SINE | Alu | AluSx1 |
CAediting_1338182 | chr19_35275290_+ | SINE | Alu | AluSx1 |
CAediting_1338183 | chr19_35275309_+ | SINE | Alu | AluSx1 |
CAediting_1338184 | chr19_35276197_+ | SINE | Alu | AluSz6 |
CAediting_1338185 | chr19_35276252_+ | SINE | Alu | AluSz6 |
CAediting_1338186 | chr19_35276255_+ | SINE | Alu | AluSz6 |
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RNA A-to-I editing events in the alternative splicing sites for USF2 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for USF2 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for USF2 |
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The effects of the RNA editing to the miRNA binding sites for USF2 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_77128 | chr1_85133844_+ | ENSG00000105698.14 | ENST00000343550 | hsa-miR-4423-3p | 35279419 | 35279425 | 7mer-m8 | 35279406 | 35279426 | 140 | -12.33 |
CAediting_77128 | chr1_85133844_+ | ENSG00000105698.14 | ENST00000595068 | hsa-miR-4423-3p | 35279419 | 35279425 | 7mer-m8 | 35279406 | 35279426 | 140 | -12.33 |
CAediting_77128 | chr1_85133844_+ | ENSG00000105698.14 | ENST00000599471 | hsa-miR-4423-3p | 35279419 | 35279425 | 7mer-m8 | 35279406 | 35279426 | 140 | -12.33 |
CAediting_604450 | chr7_133034877_- | ENSG00000105698.14 | ENST00000597671 | hsa-miR-3654 | 35278735 | 35278741 | 7mer-m8 | 35278724 | 35278742 | 146 | -15.58 |
CAediting_468389 | chr6_31355314_- | ENSG00000105698.14 | ENST00000343550 | hsa-miR-6891-5p | 35279430 | 35279436 | 7mer-m8 | 35279419 | 35279437 | 156 | -26.4 |
CAediting_1524209 | chrX_134546392_- | ENSG00000105698.14 | ENST00000343550 | hsa-miR-503-5p | 35279567 | 35279573 | 7mer-m8 | 35279552 | 35279574 | 155 | -28.67 |
CAediting_468389 | chr6_31355314_- | ENSG00000105698.14 | ENST00000595068 | hsa-miR-6891-5p | 35279430 | 35279436 | 7mer-m8 | 35279419 | 35279437 | 156 | -26.4 |
CAediting_1524209 | chrX_134546392_- | ENSG00000105698.14 | ENST00000595068 | hsa-miR-503-5p | 35279567 | 35279573 | 7mer-m8 | 35279552 | 35279574 | 155 | -28.67 |
CAediting_1524209 | chrX_134546392_- | ENSG00000105698.14 | ENST00000602164 | hsa-miR-503-5p | 35269960 | 35269966 | 7mer-m8 | 35269945 | 35269967 | 145 | -20.82 |
CAediting_1524209 | chrX_134546392_- | ENSG00000105698.14 | ENST00000602164 | hsa-miR-503-5p | 35269885 | 35269891 | 7mer-m8 | 35269867 | 35269892 | 154 | -23.97 |
CAediting_468389 | chr6_31355314_- | ENSG00000105698.14 | ENST00000599471 | hsa-miR-6891-5p | 35279430 | 35279436 | 7mer-m8 | 35279419 | 35279437 | 156 | -26.4 |
CAediting_1524209 | chrX_134546392_- | ENSG00000105698.14 | ENST00000599471 | hsa-miR-503-5p | 35279567 | 35279573 | 7mer-m8 | 35279552 | 35279574 | 155 | -28.67 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1054808 | chr15_66496985_- | ENSG00000105698.14 | ENST00000343550 | hsa-miR-4512 | 35279551 | 35279557 | 7mer-m8 | 35279539 | 35279558 | 150 | -29.29 |
CAediting_1054808 | chr15_66496985_- | ENSG00000105698.14 | ENST00000595068 | hsa-miR-4512 | 35279551 | 35279557 | 7mer-m8 | 35279539 | 35279558 | 150 | -29.29 |
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The effects of the RNA editing to the stability of the RNA structures for USF2 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for USF2 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for USF2 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_1338171 | chr19_35274726_+ | 0.0147002561378331 | 0.3501406308886 |
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Relation with survival for USF2 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for USF2 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for USF2 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |