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Editing gene: SHISA9 (CAeditome ID:729993)

Gene summary for SHISA9

Gene summary

Gene information	Gene symbol	SHISA9
	Gene ID	729993
	Gene name	shisa family member 9
	Synonyms	CKAMP44
	Cytomap	16p13.12
	Type of gene	protein-coding
	Description	protein shisa-9cystine-knot AMPAR modulating proteinshisa homolog 9
	Modification date	20210518
	UniProtAcc	B4DS77
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for SHISA9

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000237515.7

RNA A-to-I editing events in Cancer.

CAediting_1089778(12909986, +), CAediting_1089779(12910504, +), CAediting_1089780(12920486, +), CAediting_1089781(12922637, +), CAediting_1089782(12923258, +), CAediting_1089783(12923266, +), CAediting_1089784(12923268, +), CAediting_1089785(12923274, +), CAediting_1089786(12923275, +), CAediting_1089787(12923720, +), CAediting_1089788(12923730, +), CAediting_1089789(12923747, +), CAediting_1089790(12923796, +), CAediting_1089791(12929365, +), CAediting_1089792(12929366, +), CAediting_1089793(12929368, +), CAediting_1089794(12929372, +), CAediting_1089795(12929373, +), CAediting_1089796(12929381, +), CAediting_1089797(12929390, +), CAediting_1089798(12929391, +), CAediting_1089799(12929418, +), CAediting_1089800(12929430, +), CAediting_1089801(12929448, +), CAediting_1089802(12929461, +), CAediting_1089803(12929509, +), CAediting_1089804(12929553, +), CAediting_1089805(12931570, +), CAediting_1089806(12931631, +), CAediting_1089807(12931656, +), CAediting_1089808(12931658, +), CAediting_1089809(12931711, +), CAediting_1089810(12931783, +), CAediting_1089811(12935793, +), CAediting_1089812(12949778, +), CAediting_1089813(12950223, +), CAediting_1089814(12950790, +), CAediting_1089815(12950869, +), CAediting_1089816(12951012, +), CAediting_1089817(12951021, +), CAediting_1089818(12951036, +), CAediting_1089819(12951046, +), CAediting_1089820(12951146, +), CAediting_1089821(12951171, +), CAediting_1089822(12952508, +), CAediting_1089823(12952527, +), CAediting_1089824(12952571, +), CAediting_1089825(12952576, +), CAediting_1089826(12952644, +), CAediting_1089827(12952669, +), CAediting_1089828(12952671, +), CAediting_1089829(12952739, +), CAediting_1089830(12952757, +), CAediting_1089831(12952758, +), CAediting_1089832(12952785, +), CAediting_1089833(12952798, +), CAediting_1089834(12952817, +), CAediting_1089835(12952819, +), CAediting_1089836(12952820, +), CAediting_1089837(12952824, +), CAediting_1089838(12953699, +), CAediting_1089839(12953740, +), CAediting_1089840(12953754, +), CAediting_1089841(12953755, +), CAediting_1089842(12953756, +), CAediting_1089843(12953759, +), CAediting_1089844(12953760, +), CAediting_1089845(12953784, +), CAediting_1089846(12953803, +), CAediting_1089847(12953808, +), CAediting_1089848(12953812, +), CAediting_1089849(12953830, +), CAediting_1089850(12953864, +), CAediting_1089851(12953900, +), CAediting_1089852(12953901, +), CAediting_1089853(12953902, +), CAediting_1089854(12953903, +), CAediting_1089855(12953906, +), CAediting_1089856(12953909, +), CAediting_1089857(12953919, +), CAediting_1089858(12953955, +), CAediting_1089859(12953966, +), CAediting_1089860(12953968, +), CAediting_1089861(12953972, +), CAediting_1089862(12953983, +), CAediting_1089863(12956453, +), CAediting_1089864(12956455, +), CAediting_1089865(12956499, +), CAediting_1089866(12956502, +), CAediting_1089867(12956503, +), CAediting_1089868(12956506, +), CAediting_1089869(12956508, +), CAediting_1089870(12956546, +), CAediting_1089871(12956547, +), CAediting_1089872(12956549, +), CAediting_1089873(12956550, +), CAediting_1089874(12956557, +), CAediting_1089875(12957805, +), CAediting_1089876(12957905, +), CAediting_1089877(12957983, +), CAediting_1089878(12958004, +), CAediting_1089879(12962605, +), CAediting_1089880(12967871, +), CAediting_1089881(12968903, +), CAediting_1089882(12968911, +), CAediting_1089883(12968979, +), CAediting_1089884(12969042, +), CAediting_1089885(12969077, +), CAediting_1089886(12969082, +), CAediting_1089887(12969090, +), CAediting_1089888(12969091, +), CAediting_1089889(12969096, +), CAediting_1089890(12969144, +), CAediting_1089891(12969158, +), CAediting_1089892(12969159, +), CAediting_1089893(12969610, +), CAediting_1089894(12969668, +), CAediting_1089895(12969742, +), CAediting_1089896(12976271, +), CAediting_1089897(12987389, +), CAediting_1089898(12987464, +), CAediting_1089899(12987485, +), CAediting_1089900(12987542, +), CAediting_1089901(12989799, +), CAediting_1089902(12989907, +), CAediting_1089903(12989996, +), CAediting_1089904(12990168, +), CAediting_1089905(12992453, +), CAediting_1089906(12992464, +), CAediting_1089907(13002597, +), CAediting_1089908(13002672, +), CAediting_1089909(13002801, +), CAediting_1089910(13003648, +), CAediting_1089911(13004647, +), CAediting_1089912(13004669, +), CAediting_1089913(13004678, +), CAediting_1089914(13004691, +), CAediting_1089915(13004715, +), CAediting_1089916(13004724, +), CAediting_1089917(13004738, +), CAediting_1089918(13004741, +), CAediting_1089919(13004748, +), CAediting_1089920(13004749, +), CAediting_1089921(13004785, +), CAediting_1089922(13004811, +), CAediting_1089923(13004812, +), CAediting_1089924(13004817, +), CAediting_1089925(13004821, +), CAediting_1089926(13004838, +), CAediting_1089927(13004852, +), CAediting_1089928(13004864, +), CAediting_1089929(13004882, +), CAediting_1089930(13004884, +), CAediting_1089931(13004887, +), CAediting_1089932(13004895, +), CAediting_1089933(13010935, +), CAediting_1089934(13011965, +), CAediting_1089935(13026522, +), CAediting_1089936(13027495, +), CAediting_1089937(13027780, +), CAediting_1089938(13027806, +), CAediting_1089939(13027807, +), CAediting_1089940(13027842, +), CAediting_1089941(13027848, +), CAediting_1089942(13033955, +), CAediting_1089943(13034077, +), CAediting_1089944(13035696, +), CAediting_1089945(13055240, +), CAediting_1089946(13056648, +), CAediting_1089947(13057836, +), CAediting_1089948(13059543, +), CAediting_1089949(13060576, +), CAediting_1089950(13060682, +), CAediting_1089951(13060691, +), CAediting_1089952(13060710, +), CAediting_1089953(13060924, +), CAediting_1089954(13062115, +), CAediting_1089955(13063834, +), CAediting_1089956(13063981, +), CAediting_1089957(13101670, +), CAediting_1089958(13104566, +), CAediting_1089959(13104615, +), CAediting_1089960(13108150, +), CAediting_1089961(13108152, +), CAediting_1089962(13108173, +), CAediting_1089963(13108319, +), CAediting_1089964(13108486, +), CAediting_1089965(13110009, +), CAediting_1089966(13110013, +), CAediting_1089967(13113095, +), CAediting_1089968(13114205, +), CAediting_1089969(13114212, +), CAediting_1089970(13114345, +), CAediting_1089971(13118061, +), CAediting_1089972(13118103, +), CAediting_1089973(13149691, +), CAediting_1089974(13149760, +), CAediting_1089975(13149772, +), CAediting_1089976(13149804, +), CAediting_1089977(13149818, +), CAediting_1089978(13149845, +), CAediting_1089979(13149846, +), CAediting_1089980(13169974, +), CAediting_1089981(13169975, +), CAediting_1089982(13170854, +), CAediting_1089983(13232064, +), CAediting_1089984(13232076, +), CAediting_1089985(13232083, +), CAediting_1089986(13237391, +), CAediting_1089987(13237487, +), CAediting_1089988(13237543, +),

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RNA editing positional annotations for SHISA9 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1089778	chr16_12909986_+	UTR3
CAediting_1089779	chr16_12910504_+	UTR3
CAediting_1089780	chr16_12920486_+	intronic
CAediting_1089781	chr16_12922637_+	intronic
CAediting_1089782	chr16_12923258_+	intronic
CAediting_1089783	chr16_12923266_+	intronic
CAediting_1089784	chr16_12923268_+	intronic
CAediting_1089785	chr16_12923274_+	intronic
CAediting_1089786	chr16_12923275_+	intronic
CAediting_1089787	chr16_12923720_+	intronic
CAediting_1089788	chr16_12923730_+	intronic
CAediting_1089789	chr16_12923747_+	intronic
CAediting_1089790	chr16_12923796_+	intronic
CAediting_1089791	chr16_12929365_+	intronic
CAediting_1089792	chr16_12929366_+	intronic
CAediting_1089793	chr16_12929368_+	intronic
CAediting_1089794	chr16_12929372_+	intronic
CAediting_1089795	chr16_12929373_+	intronic
CAediting_1089796	chr16_12929381_+	intronic
CAediting_1089797	chr16_12929390_+	intronic
CAediting_1089798	chr16_12929391_+	intronic
CAediting_1089799	chr16_12929418_+	intronic
CAediting_1089800	chr16_12929430_+	intronic
CAediting_1089801	chr16_12929448_+	intronic
CAediting_1089802	chr16_12929461_+	intronic
CAediting_1089803	chr16_12929509_+	intronic
CAediting_1089804	chr16_12929553_+	intronic
CAediting_1089805	chr16_12931570_+	intronic
CAediting_1089806	chr16_12931631_+	intronic
CAediting_1089807	chr16_12931656_+	intronic
CAediting_1089808	chr16_12931658_+	intronic
CAediting_1089809	chr16_12931711_+	intronic
CAediting_1089810	chr16_12931783_+	intronic
CAediting_1089811	chr16_12935793_+	intronic
CAediting_1089812	chr16_12949778_+	intronic
CAediting_1089813	chr16_12950223_+	intronic
CAediting_1089814	chr16_12950790_+	intronic
CAediting_1089815	chr16_12950869_+	intronic
CAediting_1089816	chr16_12951012_+	intronic
CAediting_1089817	chr16_12951021_+	intronic
CAediting_1089818	chr16_12951036_+	intronic
CAediting_1089819	chr16_12951046_+	intronic
CAediting_1089820	chr16_12951146_+	intronic
CAediting_1089821	chr16_12951171_+	intronic
CAediting_1089822	chr16_12952508_+	intronic
CAediting_1089823	chr16_12952527_+	intronic
CAediting_1089824	chr16_12952571_+	intronic
CAediting_1089825	chr16_12952576_+	intronic
CAediting_1089826	chr16_12952644_+	intronic
CAediting_1089827	chr16_12952669_+	intronic
CAediting_1089828	chr16_12952671_+	intronic
CAediting_1089829	chr16_12952739_+	intronic
CAediting_1089830	chr16_12952757_+	intronic
CAediting_1089831	chr16_12952758_+	intronic
CAediting_1089832	chr16_12952785_+	intronic
CAediting_1089833	chr16_12952798_+	intronic
CAediting_1089834	chr16_12952817_+	intronic
CAediting_1089835	chr16_12952819_+	intronic
CAediting_1089836	chr16_12952820_+	intronic
CAediting_1089837	chr16_12952824_+	intronic
CAediting_1089838	chr16_12953699_+	intronic
CAediting_1089839	chr16_12953740_+	intronic
CAediting_1089840	chr16_12953754_+	intronic
CAediting_1089841	chr16_12953755_+	intronic
CAediting_1089842	chr16_12953756_+	intronic
CAediting_1089843	chr16_12953759_+	intronic
CAediting_1089844	chr16_12953760_+	intronic
CAediting_1089845	chr16_12953784_+	intronic
CAediting_1089846	chr16_12953803_+	intronic
CAediting_1089847	chr16_12953808_+	intronic
CAediting_1089848	chr16_12953812_+	intronic
CAediting_1089849	chr16_12953830_+	intronic
CAediting_1089850	chr16_12953864_+	intronic
CAediting_1089851	chr16_12953900_+	intronic
CAediting_1089852	chr16_12953901_+	intronic
CAediting_1089853	chr16_12953902_+	intronic
CAediting_1089854	chr16_12953903_+	intronic
CAediting_1089855	chr16_12953906_+	intronic
CAediting_1089856	chr16_12953909_+	intronic
CAediting_1089857	chr16_12953919_+	intronic
CAediting_1089858	chr16_12953955_+	intronic
CAediting_1089859	chr16_12953966_+	intronic
CAediting_1089860	chr16_12953968_+	intronic
CAediting_1089861	chr16_12953972_+	intronic
CAediting_1089862	chr16_12953983_+	intronic
CAediting_1089863	chr16_12956453_+	intronic
CAediting_1089864	chr16_12956455_+	intronic
CAediting_1089865	chr16_12956499_+	intronic
CAediting_1089866	chr16_12956502_+	intronic
CAediting_1089867	chr16_12956503_+	intronic
CAediting_1089868	chr16_12956506_+	intronic
CAediting_1089869	chr16_12956508_+	intronic
CAediting_1089870	chr16_12956546_+	intronic
CAediting_1089871	chr16_12956547_+	intronic
CAediting_1089872	chr16_12956549_+	intronic
CAediting_1089873	chr16_12956550_+	intronic
CAediting_1089874	chr16_12956557_+	intronic
CAediting_1089875	chr16_12957805_+	intronic
CAediting_1089876	chr16_12957905_+	intronic
CAediting_1089877	chr16_12957983_+	intronic
CAediting_1089878	chr16_12958004_+	intronic
CAediting_1089879	chr16_12962605_+	intronic
CAediting_1089880	chr16_12967871_+	intronic
CAediting_1089881	chr16_12968903_+	intronic
CAediting_1089882	chr16_12968911_+	intronic
CAediting_1089883	chr16_12968979_+	intronic
CAediting_1089884	chr16_12969042_+	intronic
CAediting_1089885	chr16_12969077_+	intronic
CAediting_1089886	chr16_12969082_+	intronic
CAediting_1089887	chr16_12969090_+	intronic
CAediting_1089888	chr16_12969091_+	intronic
CAediting_1089889	chr16_12969096_+	intronic
CAediting_1089890	chr16_12969144_+	intronic
CAediting_1089891	chr16_12969158_+	intronic
CAediting_1089892	chr16_12969159_+	intronic
CAediting_1089893	chr16_12969610_+	intronic
CAediting_1089894	chr16_12969668_+	intronic
CAediting_1089895	chr16_12969742_+	intronic
CAediting_1089896	chr16_12976271_+	intronic
CAediting_1089897	chr16_12987389_+	intronic
CAediting_1089898	chr16_12987464_+	intronic
CAediting_1089899	chr16_12987485_+	intronic
CAediting_1089900	chr16_12987542_+	intronic
CAediting_1089901	chr16_12989799_+	intronic
CAediting_1089902	chr16_12989907_+	intronic
CAediting_1089903	chr16_12989996_+	intronic
CAediting_1089904	chr16_12990168_+	intronic
CAediting_1089905	chr16_12992453_+	intronic
CAediting_1089906	chr16_12992464_+	intronic
CAediting_1089907	chr16_13002597_+	intronic
CAediting_1089908	chr16_13002672_+	intronic
CAediting_1089909	chr16_13002801_+	intronic
CAediting_1089910	chr16_13003648_+	intronic
CAediting_1089911	chr16_13004647_+	intronic
CAediting_1089912	chr16_13004669_+	intronic
CAediting_1089913	chr16_13004678_+	intronic
CAediting_1089914	chr16_13004691_+	intronic
CAediting_1089915	chr16_13004715_+	intronic
CAediting_1089916	chr16_13004724_+	intronic
CAediting_1089917	chr16_13004738_+	intronic
CAediting_1089918	chr16_13004741_+	intronic
CAediting_1089919	chr16_13004748_+	intronic
CAediting_1089920	chr16_13004749_+	intronic
CAediting_1089921	chr16_13004785_+	intronic
CAediting_1089922	chr16_13004811_+	intronic
CAediting_1089923	chr16_13004812_+	intronic
CAediting_1089924	chr16_13004817_+	intronic
CAediting_1089925	chr16_13004821_+	intronic
CAediting_1089926	chr16_13004838_+	intronic
CAediting_1089927	chr16_13004852_+	intronic
CAediting_1089928	chr16_13004864_+	intronic
CAediting_1089929	chr16_13004882_+	intronic
CAediting_1089930	chr16_13004884_+	intronic
CAediting_1089931	chr16_13004887_+	intronic
CAediting_1089932	chr16_13004895_+	intronic
CAediting_1089933	chr16_13010935_+	intronic
CAediting_1089934	chr16_13011965_+	intronic
CAediting_1089935	chr16_13026522_+	intronic
CAediting_1089936	chr16_13027495_+	intronic
CAediting_1089937	chr16_13027780_+	intronic
CAediting_1089938	chr16_13027806_+	intronic
CAediting_1089939	chr16_13027807_+	intronic
CAediting_1089940	chr16_13027842_+	intronic
CAediting_1089941	chr16_13027848_+	intronic
CAediting_1089942	chr16_13033955_+	intronic
CAediting_1089943	chr16_13034077_+	intronic
CAediting_1089944	chr16_13035696_+	intronic
CAediting_1089945	chr16_13055240_+	intronic
CAediting_1089946	chr16_13056648_+	intronic
CAediting_1089947	chr16_13057836_+	intronic
CAediting_1089948	chr16_13059543_+	intronic
CAediting_1089949	chr16_13060576_+	intronic
CAediting_1089950	chr16_13060682_+	intronic
CAediting_1089951	chr16_13060691_+	intronic
CAediting_1089952	chr16_13060710_+	intronic
CAediting_1089953	chr16_13060924_+	intronic
CAediting_1089954	chr16_13062115_+	intronic
CAediting_1089955	chr16_13063834_+	intronic
CAediting_1089956	chr16_13063981_+	intronic
CAediting_1089957	chr16_13101670_+	ncRNA_intronic
CAediting_1089958	chr16_13104566_+	ncRNA_intronic
CAediting_1089959	chr16_13104615_+	ncRNA_intronic
CAediting_1089960	chr16_13108150_+	ncRNA_intronic
CAediting_1089961	chr16_13108152_+	ncRNA_intronic
CAediting_1089962	chr16_13108173_+	ncRNA_intronic
CAediting_1089963	chr16_13108319_+	ncRNA_intronic
CAediting_1089964	chr16_13108486_+	ncRNA_intronic
CAediting_1089965	chr16_13110009_+	ncRNA_intronic
CAediting_1089966	chr16_13110013_+	ncRNA_intronic
CAediting_1089967	chr16_13113095_+	ncRNA_intronic
CAediting_1089968	chr16_13114205_+	ncRNA_intronic
CAediting_1089969	chr16_13114212_+	ncRNA_intronic
CAediting_1089970	chr16_13114345_+	ncRNA_intronic
CAediting_1089971	chr16_13118061_+	ncRNA_intronic
CAediting_1089972	chr16_13118103_+	ncRNA_intronic
CAediting_1089973	chr16_13149691_+	ncRNA_intronic
CAediting_1089974	chr16_13149760_+	ncRNA_intronic
CAediting_1089975	chr16_13149772_+	ncRNA_intronic
CAediting_1089976	chr16_13149804_+	ncRNA_intronic
CAediting_1089977	chr16_13149818_+	ncRNA_intronic
CAediting_1089978	chr16_13149845_+	ncRNA_intronic
CAediting_1089979	chr16_13149846_+	ncRNA_intronic
CAediting_1089980	chr16_13169974_+	ncRNA_intronic
CAediting_1089981	chr16_13169975_+	ncRNA_intronic
CAediting_1089982	chr16_13170854_+	ncRNA_intronic
CAediting_1089983	chr16_13232064_+	ncRNA_intronic
CAediting_1089984	chr16_13232076_+	ncRNA_intronic
CAediting_1089985	chr16_13232083_+	ncRNA_intronic
CAediting_1089986	chr16_13237391_+	UTR3
CAediting_1089987	chr16_13237487_+	UTR3
CAediting_1089988	chr16_13237543_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1089778	chr16_12909986_+	SINE	Alu	AluSx1
CAediting_1089780	chr16_12920486_+	LINE	L1	L1MA1
CAediting_1089781	chr16_12922637_+	SINE	Alu	AluSx
CAediting_1089782	chr16_12923258_+	SINE	Alu	AluSz6
CAediting_1089783	chr16_12923266_+	SINE	Alu	AluSz6
CAediting_1089784	chr16_12923268_+	SINE	Alu	AluSz6
CAediting_1089785	chr16_12923274_+	SINE	Alu	AluSz6
CAediting_1089786	chr16_12923275_+	SINE	Alu	AluSz6
CAediting_1089787	chr16_12923720_+	SINE	Alu	AluYh3
CAediting_1089788	chr16_12923730_+	SINE	Alu	AluYh3
CAediting_1089789	chr16_12923747_+	SINE	Alu	AluYh3
CAediting_1089790	chr16_12923796_+	SINE	Alu	AluYh3
CAediting_1089791	chr16_12929365_+	LINE	L1	L1PA11
CAediting_1089792	chr16_12929366_+	LINE	L1	L1PA11
CAediting_1089793	chr16_12929368_+	LINE	L1	L1PA11
CAediting_1089794	chr16_12929372_+	LINE	L1	L1PA11
CAediting_1089795	chr16_12929373_+	LINE	L1	L1PA11
CAediting_1089796	chr16_12929381_+	LINE	L1	L1PA11
CAediting_1089797	chr16_12929390_+	LINE	L1	L1PA11
CAediting_1089798	chr16_12929391_+	LINE	L1	L1PA11
CAediting_1089799	chr16_12929418_+	LINE	L1	L1PA11
CAediting_1089800	chr16_12929430_+	LINE	L1	L1PA11
CAediting_1089801	chr16_12929448_+	LINE	L1	L1PA11
CAediting_1089802	chr16_12929461_+	LINE	L1	L1PA11
CAediting_1089803	chr16_12929509_+	LINE	L1	L1PA11
CAediting_1089804	chr16_12929553_+	LINE	L1	L1PA11
CAediting_1089805	chr16_12931570_+	LINE	L1	L1PA16
CAediting_1089806	chr16_12931631_+	LINE	L1	L1PA16
CAediting_1089807	chr16_12931656_+	LINE	L1	L1PA16
CAediting_1089808	chr16_12931658_+	LINE	L1	L1PA16
CAediting_1089809	chr16_12931711_+	LINE	L1	L1PA16
CAediting_1089810	chr16_12931783_+	LINE	L1	L1PA16
CAediting_1089811	chr16_12935793_+	SINE	Alu	AluJb
CAediting_1089812	chr16_12949778_+	LINE	L1	L1MA4
CAediting_1089813	chr16_12950223_+	LINE	L1	L1MA4
CAediting_1089814	chr16_12950790_+	SINE	Alu	AluSc
CAediting_1089815	chr16_12950869_+	SINE	Alu	AluSc
CAediting_1089816	chr16_12951012_+	SINE	Alu	AluSx1
CAediting_1089817	chr16_12951021_+	SINE	Alu	AluSx1
CAediting_1089818	chr16_12951036_+	SINE	Alu	AluSx1
CAediting_1089819	chr16_12951046_+	SINE	Alu	AluSx1
CAediting_1089820	chr16_12951146_+	SINE	Alu	AluSx1
CAediting_1089821	chr16_12951171_+	SINE	Alu	AluSx1
CAediting_1089822	chr16_12952508_+	LTR	ERVL-MaLR	THE1C
CAediting_1089823	chr16_12952527_+	LTR	ERVL-MaLR	THE1C
CAediting_1089824	chr16_12952571_+	LTR	ERVL-MaLR	THE1C
CAediting_1089825	chr16_12952576_+	LTR	ERVL-MaLR	THE1C
CAediting_1089826	chr16_12952644_+	LTR	ERVL-MaLR	THE1C
CAediting_1089827	chr16_12952669_+	LTR	ERVL-MaLR	THE1C
CAediting_1089828	chr16_12952671_+	LTR	ERVL-MaLR	THE1C
CAediting_1089829	chr16_12952739_+	LTR	ERVL-MaLR	THE1C
CAediting_1089830	chr16_12952757_+	LTR	ERVL-MaLR	THE1C
CAediting_1089831	chr16_12952758_+	LTR	ERVL-MaLR	THE1C
CAediting_1089832	chr16_12952785_+	LTR	ERVL-MaLR	THE1C
CAediting_1089833	chr16_12952798_+	LTR	ERVL-MaLR	THE1C
CAediting_1089834	chr16_12952817_+	LTR	ERVL-MaLR	THE1C
CAediting_1089835	chr16_12952819_+	LTR	ERVL-MaLR	THE1C
CAediting_1089836	chr16_12952820_+	LTR	ERVL-MaLR	THE1C
CAediting_1089837	chr16_12952824_+	LTR	ERVL-MaLR	THE1C
CAediting_1089838	chr16_12953699_+	LTR	ERVL-MaLR	THE1D
CAediting_1089839	chr16_12953740_+	LTR	ERVL-MaLR	THE1D
CAediting_1089840	chr16_12953754_+	LTR	ERVL-MaLR	THE1D
CAediting_1089841	chr16_12953755_+	LTR	ERVL-MaLR	THE1D
CAediting_1089842	chr16_12953756_+	LTR	ERVL-MaLR	THE1D
CAediting_1089843	chr16_12953759_+	LTR	ERVL-MaLR	THE1D
CAediting_1089844	chr16_12953760_+	LTR	ERVL-MaLR	THE1D
CAediting_1089845	chr16_12953784_+	LTR	ERVL-MaLR	THE1D
CAediting_1089846	chr16_12953803_+	LTR	ERVL-MaLR	THE1D
CAediting_1089847	chr16_12953808_+	LTR	ERVL-MaLR	THE1D
CAediting_1089848	chr16_12953812_+	LTR	ERVL-MaLR	THE1D
CAediting_1089849	chr16_12953830_+	LTR	ERVL-MaLR	THE1D
CAediting_1089850	chr16_12953864_+	LTR	ERVL-MaLR	THE1D
CAediting_1089851	chr16_12953900_+	LTR	ERVL-MaLR	THE1D
CAediting_1089852	chr16_12953901_+	LTR	ERVL-MaLR	THE1D
CAediting_1089853	chr16_12953902_+	LTR	ERVL-MaLR	THE1D
CAediting_1089854	chr16_12953903_+	LTR	ERVL-MaLR	THE1D
CAediting_1089855	chr16_12953906_+	LTR	ERVL-MaLR	THE1D
CAediting_1089856	chr16_12953909_+	LTR	ERVL-MaLR	THE1D
CAediting_1089857	chr16_12953919_+	LTR	ERVL-MaLR	THE1D
CAediting_1089858	chr16_12953955_+	LTR	ERVL-MaLR	THE1D
CAediting_1089859	chr16_12953966_+	LTR	ERVL-MaLR	THE1D
CAediting_1089860	chr16_12953968_+	LTR	ERVL-MaLR	THE1D
CAediting_1089861	chr16_12953972_+	LTR	ERVL-MaLR	THE1D
CAediting_1089862	chr16_12953983_+	LTR	ERVL-MaLR	THE1D
CAediting_1089863	chr16_12956453_+	LINE	L1	L1PB4
CAediting_1089864	chr16_12956455_+	LINE	L1	L1PB4
CAediting_1089865	chr16_12956499_+	LINE	L1	L1PB4
CAediting_1089866	chr16_12956502_+	LINE	L1	L1PB4
CAediting_1089867	chr16_12956503_+	LINE	L1	L1PB4
CAediting_1089868	chr16_12956506_+	LINE	L1	L1PB4
CAediting_1089869	chr16_12956508_+	LINE	L1	L1PB4
CAediting_1089870	chr16_12956546_+	LINE	L1	L1PB4
CAediting_1089871	chr16_12956547_+	LINE	L1	L1PB4
CAediting_1089872	chr16_12956549_+	LINE	L1	L1PB4
CAediting_1089873	chr16_12956550_+	LINE	L1	L1PB4
CAediting_1089874	chr16_12956557_+	LINE	L1	L1PB4
CAediting_1089875	chr16_12957805_+	LTR	ERVL-MaLR	MLT1A
CAediting_1089876	chr16_12957905_+	LTR	ERVL-MaLR	MLT1A
CAediting_1089877	chr16_12957983_+	LTR	ERVL-MaLR	MLT1A
CAediting_1089878	chr16_12958004_+	LTR	ERVL-MaLR	MLT1A
CAediting_1089879	chr16_12962605_+	LTR	ERVL-MaLR	MLT1A
CAediting_1089880	chr16_12967871_+	DNA	hAT-Charlie	MER5B
CAediting_1089881	chr16_12968903_+	SINE	Alu	AluSx3
CAediting_1089882	chr16_12968911_+	SINE	Alu	AluSx3
CAediting_1089883	chr16_12968979_+	SINE	Alu	AluSx3
CAediting_1089884	chr16_12969042_+	SINE	Alu	AluSx3
CAediting_1089885	chr16_12969077_+	SINE	Alu	AluSx3
CAediting_1089886	chr16_12969082_+	SINE	Alu	AluSx3
CAediting_1089887	chr16_12969090_+	SINE	Alu	AluSx3
CAediting_1089888	chr16_12969091_+	SINE	Alu	AluSx3
CAediting_1089889	chr16_12969096_+	SINE	Alu	AluSx3
CAediting_1089890	chr16_12969144_+	SINE	Alu	AluSx3
CAediting_1089891	chr16_12969158_+	SINE	Alu	AluSx3
CAediting_1089892	chr16_12969159_+	SINE	Alu	AluSx3
CAediting_1089893	chr16_12969610_+	SINE	Alu	AluSx
CAediting_1089894	chr16_12969668_+	SINE	Alu	AluSx
CAediting_1089895	chr16_12969742_+	SINE	Alu	AluSx
CAediting_1089896	chr16_12976271_+	SINE	Alu	AluSz6
CAediting_1089897	chr16_12987389_+	LINE	L1	L1PA10
CAediting_1089898	chr16_12987464_+	LINE	L1	L1PA10
CAediting_1089899	chr16_12987485_+	LINE	L1	L1PA10
CAediting_1089900	chr16_12987542_+	LINE	L1	L1PA10
CAediting_1089901	chr16_12989799_+	LINE	L1	L1PA11
CAediting_1089902	chr16_12989907_+	LINE	L1	L1PA11
CAediting_1089903	chr16_12989996_+	LINE	L1	L1PA11
CAediting_1089904	chr16_12990168_+	LINE	L1	L1PA11
CAediting_1089905	chr16_12992453_+	SINE	Alu	AluSz
CAediting_1089906	chr16_12992464_+	SINE	Alu	AluSz
CAediting_1089907	chr16_13002597_+	SINE	Alu	AluSx
CAediting_1089908	chr16_13002672_+	SINE	Alu	AluSx
CAediting_1089909	chr16_13002801_+	SINE	Alu	AluSx
CAediting_1089910	chr16_13003648_+	SINE	Alu	AluSx
CAediting_1089911	chr16_13004647_+	SINE	Alu	AluSx1
CAediting_1089912	chr16_13004669_+	SINE	Alu	AluSx1
CAediting_1089913	chr16_13004678_+	SINE	Alu	AluSx1
CAediting_1089914	chr16_13004691_+	SINE	Alu	AluSx1
CAediting_1089915	chr16_13004715_+	SINE	Alu	AluSx1
CAediting_1089916	chr16_13004724_+	SINE	Alu	AluSx1
CAediting_1089917	chr16_13004738_+	SINE	Alu	AluSx1
CAediting_1089918	chr16_13004741_+	SINE	Alu	AluSx1
CAediting_1089919	chr16_13004748_+	SINE	Alu	AluSx1
CAediting_1089920	chr16_13004749_+	SINE	Alu	AluSx1
CAediting_1089921	chr16_13004785_+	SINE	Alu	AluSx1
CAediting_1089922	chr16_13004811_+	SINE	Alu	AluSx1
CAediting_1089923	chr16_13004812_+	SINE	Alu	AluSx1
CAediting_1089924	chr16_13004817_+	SINE	Alu	AluSx1
CAediting_1089925	chr16_13004821_+	SINE	Alu	AluSx1
CAediting_1089926	chr16_13004838_+	SINE	Alu	AluSx1
CAediting_1089927	chr16_13004852_+	SINE	Alu	AluSx1
CAediting_1089928	chr16_13004864_+	SINE	Alu	AluSx1
CAediting_1089929	chr16_13004882_+	SINE	Alu	AluSx1
CAediting_1089930	chr16_13004884_+	SINE	Alu	AluSx1
CAediting_1089931	chr16_13004887_+	SINE	Alu	AluSx1
CAediting_1089932	chr16_13004895_+	SINE	Alu	AluSx1
CAediting_1089933	chr16_13010935_+	SINE	Alu	AluSx
CAediting_1089934	chr16_13011965_+	SINE	Alu	AluSz6
CAediting_1089935	chr16_13026522_+	LINE	L1	L1MB1
CAediting_1089936	chr16_13027495_+	LINE	L1	L1ME1
CAediting_1089937	chr16_13027780_+	SINE	Alu	AluSx
CAediting_1089938	chr16_13027806_+	SINE	Alu	AluSx
CAediting_1089939	chr16_13027807_+	SINE	Alu	AluSx
CAediting_1089940	chr16_13027842_+	SINE	Alu	AluSx
CAediting_1089941	chr16_13027848_+	SINE	Alu	AluSx
CAediting_1089942	chr16_13033955_+	SINE	Alu	AluSq2
CAediting_1089943	chr16_13034077_+	SINE	Alu	AluSq2
CAediting_1089944	chr16_13035696_+	SINE	Alu	AluSx
CAediting_1089945	chr16_13055240_+	SINE	MIR	MIR
CAediting_1089946	chr16_13056648_+	SINE	MIR	MIR
CAediting_1089947	chr16_13057836_+	LINE	L1	L1PA10
CAediting_1089948	chr16_13059543_+	LINE	L1	L1PA10
CAediting_1089949	chr16_13060576_+	SINE	Alu	FLAM_A
CAediting_1089954	chr16_13062115_+	DNA	hAT-Blackjack	MER53
CAediting_1089957	chr16_13101670_+	LINE	L1	L1M2
CAediting_1089958	chr16_13104566_+	LINE	L1	L1MB7
CAediting_1089959	chr16_13104615_+	LINE	L1	L1MB7
CAediting_1089960	chr16_13108150_+	SINE	Alu	AluJo
CAediting_1089961	chr16_13108152_+	SINE	Alu	AluJo
CAediting_1089962	chr16_13108173_+	SINE	Alu	AluJo
CAediting_1089963	chr16_13108319_+	SINE	Alu	AluJo
CAediting_1089964	chr16_13108486_+	SINE	Alu	AluJo
CAediting_1089965	chr16_13110009_+	LINE	L1	L1MB7
CAediting_1089966	chr16_13110013_+	LINE	L1	L1MB7
CAediting_1089967	chr16_13113095_+	SINE	Alu	AluSz
CAediting_1089968	chr16_13114205_+	SINE	Alu	AluY
CAediting_1089969	chr16_13114212_+	SINE	Alu	AluY
CAediting_1089970	chr16_13114345_+	SINE	Alu	AluY
CAediting_1089971	chr16_13118061_+	SINE	Alu	AluSx
CAediting_1089972	chr16_13118103_+	SINE	Alu	AluSx
CAediting_1089973	chr16_13149691_+	SINE	Alu	AluSx1
CAediting_1089974	chr16_13149760_+	SINE	Alu	AluSx1
CAediting_1089975	chr16_13149772_+	SINE	Alu	AluSx1
CAediting_1089976	chr16_13149804_+	SINE	Alu	AluSx1
CAediting_1089977	chr16_13149818_+	SINE	Alu	AluSx1
CAediting_1089978	chr16_13149845_+	SINE	Alu	AluSx1
CAediting_1089979	chr16_13149846_+	SINE	Alu	AluSx1
CAediting_1089980	chr16_13169974_+	SINE	Alu	AluSx
CAediting_1089981	chr16_13169975_+	SINE	Alu	AluSx
CAediting_1089982	chr16_13170854_+	SINE	Alu	AluSx
CAediting_1089983	chr16_13232064_+	LINE	L2	L2c
CAediting_1089984	chr16_13232076_+	LINE	L2	L2c
CAediting_1089985	chr16_13232083_+	LINE	L2	L2c
CAediting_1089986	chr16_13237391_+	SINE	Alu	AluSx1
CAediting_1089987	chr16_13237487_+	SINE	Alu	AluSx1
CAediting_1089988	chr16_13237543_+	SINE	Alu	AluSx1

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RNA A-to-I editing events in the alternative splicing sites for SHISA9

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000237515.7.SHISA9.

Correlation between RNA A-to-I editing and PSI for ENSG00000237515.7.SHISA9.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SHISA9

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SHISA9

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SHISA9

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1089779	chr16_12910504_+	ENSG00000237515.7	ENST00000423335	hsa-miR-383-3p	12910500	12910506	7mer-m8	12910489	12910507	140.00	-12.36
CAediting_1089779	chr16_12910504_+	ENSG00000237515.7	ENST00000423335	hsa-miR-634	12910502	12910508	7mer-m8	12910488	12910509	145.00	-16.84
CAediting_1089778	chr16_12909986_+	ENSG00000237515.7	ENST00000423335	hsa-miR-4691-3p	12909983	12909989	7mer-m8	12909963	12909990	150.00	-26.62

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1089779	chr16_12910504_+	ENSG00000237515.7	ENST00000423335	hsa-miR-4712-5p	12910501	12910507	7mer-m8	12910487	12910508	140	-12.14
CAediting_1089778	chr16_12909986_+	ENSG00000237515.7	ENST00000423335	hsa-miR-5690	12909983	12909989	7mer-m8	12909970	12909990	145	-16.75
CAediting_1089779	chr16_12910504_+	ENSG00000237515.7	ENST00000423335	hsa-miR-770-5p	12910501	12910507	7mer-m8	12910487	12910508	143	-15.14

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000237515.7	ENST00000423335	hsa-miR-624-3p	12911061	12911067	7mer-m8	12911046	12911068	154	-20.16
CAediting_393	chr1_1167164_+	ENSG00000237515.7	ENST00000423335	hsa-miR-200b-3p	12911149	12911155	7mer-m8	12911136	12911156	156	-17.74
CAediting_1054808	chr15_66496985_-	ENSG00000237515.7	ENST00000423335	hsa-miR-4512	12911186	12911193	8mer-1a	12911175	12911193	145	-19.7
CAediting_1368054	chr19_46709310_-	ENSG00000237515.7	ENST00000423335	hsa-miR-320e	12909636	12909642	7mer-m8	12909626	12909643	145	-17.72
CAediting_228905	chr2_188297554_+	ENSG00000237515.7	ENST00000423335	hsa-miR-561-3p	12910077	12910082	6mer	12910060	12910083	145	-16.26
CAediting_396018	chr5_1062918_-	ENSG00000237515.7	ENST00000423335	hsa-miR-4635	12910086	12910092	7mer-m8	12910073	12910093	158	-21.35
CAediting_442554	chr5_154685830_+	ENSG00000237515.7	ENST00000423335	hsa-miR-1303	12909640	12909645	6mer	12909625	12909646	140	-25.51
CAediting_442554	chr5_154685830_+	ENSG00000237515.7	ENST00000423335	hsa-miR-1303	12910295	12910302	8mer-1a	12910281	12910302	146	-13.99
CAediting_468389	chr6_31355314_-	ENSG00000237515.7	ENST00000423335	hsa-miR-6891-5p	12909617	12909624	8mer-1a	12909606	12909624	146	-21.43
CAediting_468389	chr6_31355314_-	ENSG00000237515.7	ENST00000423335	hsa-miR-6891-5p	12909000	12909006	7mer-m8	12908993	12909010	152	-22.72
CAediting_468389	chr6_31355314_-	ENSG00000237515.7	ENST00000423335	hsa-miR-6891-5p	12909003	12909009	7mer-m8	12908993	12909010	152	-22.72

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1160181	chr17_7017644_-	ENSG00000237515.7	ENST00000423335	hsa-miR-195-3p	12909488	12909494	7mer-m8	12909474	12909495	140	-14.41
CAediting_393	chr1_1167164_+	ENSG00000237515.7	ENST00000423335	hsa-miR-200b-3p	12910234	12910240	7mer-m8	12910218	12910241	149	-12.55
CAediting_1368054	chr19_46709310_-	ENSG00000237515.7	ENST00000423335	hsa-miR-320e	12909082	12909088	7mer-m8	12909072	12909089	146	-13.91
CAediting_468389	chr6_31355314_-	ENSG00000237515.7	ENST00000423335	hsa-miR-6891-5p	12909807	12909812	6mer	12909795	12909813	143	-17.15

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SHISA9

- RNA A-to-I editing in mRNA.
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ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SHISA9

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LGG	CAediting_1089779	chr16_12910504_+	.	.	0.0148346471696549	0.273232704529857	.	.
BRCA	CAediting_1089779	chr16_12910504_+	2.27238719071441e-05	0.542357765296224	.	.	.	.

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Relation with cancer stages for SHISA9

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for SHISA9

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SHISA9

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SHISA9

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene