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Editing gene: LINC00847 (CAeditome ID:729678)

Gene summary for LINC00847

Gene summary

Gene information	Gene symbol	LINC00847
	Gene ID	729678
	Gene name	long intergenic non-protein coding RNA 847
	Synonyms	-
	Cytomap	5q35.3
	Type of gene	ncRNA
	Description	CTC-205M6.2
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for LINC00847

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000245060.5

RNA A-to-I editing events in Cancer.

CAediting_455277(180832009, +), CAediting_455278(180832010, +), CAediting_455279(180832030, +), CAediting_455280(180832039, +), CAediting_455281(180832046, +), CAediting_455282(180832216, +), CAediting_455283(180832226, +), CAediting_455284(180832231, +), CAediting_455285(180832253, +), CAediting_455286(180832270, +), CAediting_455287(180832336, +), CAediting_455288(180832413, +), CAediting_455289(180832414, +), CAediting_455290(180832415, +), CAediting_455291(180833345, +), CAediting_455292(180833358, +), CAediting_455293(180833364, +), CAediting_455294(180833368, +), CAediting_455295(180833398, +), CAediting_455296(180833732, +), CAediting_455297(180833800, +), CAediting_455298(180833812, +), CAediting_455299(180833931, +), CAediting_455300(180834041, +), CAediting_455301(180835080, +), CAediting_455302(180835096, +), CAediting_455303(180835110, +), CAediting_455304(180835113, +), CAediting_455305(180835114, +), CAediting_455306(180835117, +), CAediting_455307(180835122, +), CAediting_455308(180835129, +), CAediting_455309(180835130, +), CAediting_455310(180835139, +), CAediting_455311(180835140, +), CAediting_455312(180835147, +), CAediting_455313(180835304, +), CAediting_455314(180835317, +), CAediting_455315(180835373, +), CAediting_455316(180835380, +), CAediting_455317(180835387, +), CAediting_455318(180835388, +), CAediting_455319(180835396, +), CAediting_455320(180835420, +), CAediting_455321(180835430, +),

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RNA editing positional annotations for LINC00847 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_455277	chr5_180832009_+	ncRNA_intronic
CAediting_455278	chr5_180832010_+	ncRNA_intronic
CAediting_455279	chr5_180832030_+	ncRNA_intronic
CAediting_455280	chr5_180832039_+	ncRNA_intronic
CAediting_455281	chr5_180832046_+	ncRNA_intronic
CAediting_455282	chr5_180832216_+	ncRNA_intronic
CAediting_455283	chr5_180832226_+	ncRNA_intronic
CAediting_455284	chr5_180832231_+	ncRNA_intronic
CAediting_455285	chr5_180832253_+	ncRNA_intronic
CAediting_455286	chr5_180832270_+	ncRNA_intronic
CAediting_455287	chr5_180832336_+	ncRNA_intronic
CAediting_455288	chr5_180832413_+	ncRNA_intronic
CAediting_455289	chr5_180832414_+	ncRNA_intronic
CAediting_455290	chr5_180832415_+	ncRNA_intronic
CAediting_455291	chr5_180833345_+	ncRNA_intronic
CAediting_455292	chr5_180833358_+	ncRNA_intronic
CAediting_455293	chr5_180833364_+	ncRNA_intronic
CAediting_455294	chr5_180833368_+	ncRNA_intronic
CAediting_455295	chr5_180833398_+	ncRNA_intronic
CAediting_455296	chr5_180833732_+	ncRNA_intronic
CAediting_455297	chr5_180833800_+	ncRNA_intronic
CAediting_455298	chr5_180833812_+	ncRNA_intronic
CAediting_455299	chr5_180833931_+	ncRNA_intronic
CAediting_455300	chr5_180834041_+	ncRNA_intronic
CAediting_455301	chr5_180835080_+	ncRNA_exonic
CAediting_455302	chr5_180835096_+	ncRNA_exonic
CAediting_455303	chr5_180835110_+	ncRNA_exonic
CAediting_455304	chr5_180835113_+	ncRNA_exonic
CAediting_455305	chr5_180835114_+	ncRNA_exonic
CAediting_455306	chr5_180835117_+	ncRNA_exonic
CAediting_455307	chr5_180835122_+	ncRNA_exonic
CAediting_455308	chr5_180835129_+	ncRNA_exonic
CAediting_455309	chr5_180835130_+	ncRNA_exonic
CAediting_455310	chr5_180835139_+	ncRNA_exonic
CAediting_455311	chr5_180835140_+	ncRNA_exonic
CAediting_455312	chr5_180835147_+	ncRNA_exonic
CAediting_455313	chr5_180835304_+	ncRNA_exonic
CAediting_455314	chr5_180835317_+	ncRNA_exonic
CAediting_455315	chr5_180835373_+	ncRNA_exonic
CAediting_455316	chr5_180835380_+	ncRNA_exonic
CAediting_455317	chr5_180835387_+	ncRNA_exonic
CAediting_455318	chr5_180835388_+	ncRNA_exonic
CAediting_455319	chr5_180835396_+	ncRNA_exonic
CAediting_455320	chr5_180835420_+	ncRNA_exonic
CAediting_455321	chr5_180835430_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_455277	chr5_180832009_+	SINE	Alu	AluSq2
CAediting_455278	chr5_180832010_+	SINE	Alu	AluSq2
CAediting_455279	chr5_180832030_+	SINE	Alu	AluSq2
CAediting_455280	chr5_180832039_+	SINE	Alu	AluSq2
CAediting_455281	chr5_180832046_+	SINE	Alu	AluSq2
CAediting_455282	chr5_180832216_+	SINE	Alu	AluJb
CAediting_455283	chr5_180832226_+	SINE	Alu	AluJb
CAediting_455284	chr5_180832231_+	SINE	Alu	AluJb
CAediting_455285	chr5_180832253_+	SINE	Alu	AluJb
CAediting_455286	chr5_180832270_+	SINE	Alu	AluJb
CAediting_455287	chr5_180832336_+	SINE	Alu	AluJb
CAediting_455288	chr5_180832413_+	SINE	Alu	AluJb
CAediting_455289	chr5_180832414_+	SINE	Alu	AluJb
CAediting_455290	chr5_180832415_+	SINE	Alu	AluJb
CAediting_455291	chr5_180833345_+	SINE	Alu	AluY
CAediting_455292	chr5_180833358_+	SINE	Alu	AluY
CAediting_455293	chr5_180833364_+	SINE	Alu	AluY
CAediting_455294	chr5_180833368_+	SINE	Alu	AluY
CAediting_455295	chr5_180833398_+	SINE	Alu	AluY
CAediting_455296	chr5_180833732_+	SINE	Alu	AluSc8
CAediting_455297	chr5_180833800_+	SINE	Alu	AluSc8
CAediting_455298	chr5_180833812_+	SINE	Alu	AluSc8
CAediting_455299	chr5_180833931_+	SINE	Alu	AluSc8
CAediting_455300	chr5_180834041_+	LTR	ERVL-MaLR	MLT1A0
CAediting_455301	chr5_180835080_+	LTR	ERVL	MLT2B3
CAediting_455302	chr5_180835096_+	LTR	ERVL	MLT2B3
CAediting_455303	chr5_180835110_+	LTR	ERVL	MLT2B3
CAediting_455304	chr5_180835113_+	LTR	ERVL	MLT2B3
CAediting_455305	chr5_180835114_+	LTR	ERVL	MLT2B3
CAediting_455306	chr5_180835117_+	LTR	ERVL	MLT2B3
CAediting_455307	chr5_180835122_+	LTR	ERVL	MLT2B3
CAediting_455308	chr5_180835129_+	LTR	ERVL	MLT2B3
CAediting_455309	chr5_180835130_+	LTR	ERVL	MLT2B3
CAediting_455310	chr5_180835139_+	LTR	ERVL	MLT2B3
CAediting_455311	chr5_180835140_+	LTR	ERVL	MLT2B3
CAediting_455312	chr5_180835147_+	LTR	ERVL	MLT2B3
CAediting_455313	chr5_180835304_+	LTR	ERVL	MLT2B3
CAediting_455314	chr5_180835317_+	LTR	ERVL	MLT2B3
CAediting_455315	chr5_180835373_+	LTR	ERVL	MLT2B3
CAediting_455316	chr5_180835380_+	LTR	ERVL	MLT2B3
CAediting_455317	chr5_180835387_+	LTR	ERVL	MLT2B3
CAediting_455318	chr5_180835388_+	LTR	ERVL	MLT2B3
CAediting_455319	chr5_180835396_+	LTR	ERVL	MLT2B3
CAediting_455320	chr5_180835420_+	LTR	ERVL	MLT2B3
CAediting_455321	chr5_180835430_+	LTR	ERVL	MLT2B3

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RNA A-to-I editing events in the alternative splicing sites for LINC00847

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000245060.5.LINC00847.

Correlation between RNA A-to-I editing and PSI for ENSG00000245060.5.LINC00847.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LINC00847

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

STAD.CAediting_455301.ENSG00000245060.LINC00847.png
Soverview

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Protein coding region RNA A-to-I editings for LINC00847

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for LINC00847

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_455301	chr5_180835080_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-4715-3p	180835077	180835083	7mer-m8	180835062	180835084	146	-14.52
CAediting_455301	chr5_180835080_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4715-3p	180835077	180835083	7mer-m8	180835062	180835084	146	-14.52
CAediting_455301	chr5_180835080_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4715-3p	180835077	180835083	7mer-m8	180835062	180835084	146	-14.52
CAediting_455302	chr5_180835096_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-4714-3p	180835094	180835100	7mer-m8	180835078	180835101	151	-25.33
CAediting_455302	chr5_180835096_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4714-3p	180835094	180835100	7mer-m8	180835078	180835101	151	-25.33
CAediting_455302	chr5_180835096_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4714-3p	180835094	180835100	7mer-m8	180835078	180835101	151	-25.33
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-1271-3p	180835115	180835122	8mer-1a	180835104	180835122	147	-20.75
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-550a-3-5p	180835115	180835122	8mer-1a	180835103	180835122	140	-14.19
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-550a-5p	180835115	180835122	8mer-1a	180835100	180835122	140	-18.3
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-550b-2-5p	180835116	180835122	7mer-m8	180835102	180835123	145	-17.68
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-6514-3p	180835114	180835120	7mer-m8	180835101	180835121	153	-16.4
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-1271-3p	180835115	180835122	8mer-1a	180835104	180835122	147	-20.75
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-550a-3-5p	180835115	180835122	8mer-1a	180835103	180835122	140	-14.19
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-550a-5p	180835115	180835122	8mer-1a	180835100	180835122	140	-18.3
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-550b-2-5p	180835116	180835122	7mer-m8	180835102	180835123	145	-17.68
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-6514-3p	180835114	180835120	7mer-m8	180835101	180835121	153	-16.4
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-1271-3p	180835115	180835122	8mer-1a	180835104	180835122	147	-20.75
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-550a-3-5p	180835115	180835122	8mer-1a	180835103	180835122	140	-14.19
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-550a-5p	180835115	180835122	8mer-1a	180835100	180835122	140	-18.3
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-550b-2-5p	180835116	180835122	7mer-m8	180835102	180835123	145	-17.68
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-6514-3p	180835114	180835120	7mer-m8	180835101	180835121	153	-16.4
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-1260a	180835124	180835130	7mer-m8	180835113	180835131	148	-16.15
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-1260b	180835124	180835130	7mer-m8	180835112	180835131	148	-17.18
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-4433a-5p	180835125	180835131	7mer-m8	180835112	180835132	145	-15.96
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-5588-3p	180835126	180835132	7mer-m8	180835114	180835133	154	-19.33
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-1260a	180835124	180835130	7mer-m8	180835113	180835131	148	-16.15
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-1260b	180835124	180835130	7mer-m8	180835112	180835131	148	-17.18
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4433a-5p	180835125	180835131	7mer-m8	180835112	180835132	145	-15.96
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-5588-3p	180835126	180835132	7mer-m8	180835114	180835133	154	-19.33
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-1260a	180835124	180835130	7mer-m8	180835113	180835131	148	-16.15
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-1260b	180835124	180835130	7mer-m8	180835112	180835131	148	-17.18
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4433a-5p	180835125	180835131	7mer-m8	180835112	180835132	145	-15.96
CAediting_455308	chr5_180835129_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-5588-3p	180835126	180835132	7mer-m8	180835114	180835133	154	-19.33
CAediting_455309	chr5_180835130_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-6736-3p	180835127	180835134	8mer-1a	180835114	180835134	145	-16.24
CAediting_455309	chr5_180835130_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-6787-3p	180835129	180835135	7mer-m8	180835116	180835136	154	-17.01
CAediting_455309	chr5_180835130_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-6736-3p	180835127	180835134	8mer-1a	180835114	180835134	145	-16.24
CAediting_455309	chr5_180835130_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-6787-3p	180835129	180835135	7mer-m8	180835116	180835136	154	-17.01
CAediting_455309	chr5_180835130_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-6736-3p	180835127	180835134	8mer-1a	180835114	180835134	145	-16.24
CAediting_455309	chr5_180835130_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-6787-3p	180835129	180835135	7mer-m8	180835116	180835136	154	-17.01
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-12113	180835134	180835140	7mer-m8	180835120	180835141	145	-16.15
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-125a-5p	180835137	180835143	7mer-1a	180835118	180835143	140	-25.21
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-345-3p	180835136	180835143	8mer-1a	180835122	180835143	145	-19.64
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-4539	180835134	180835140	7mer-m8	180835120	180835141	147	-15.27
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-670-5p	180835137	180835143	7mer-m8	180835126	180835144	146	-15.7
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-12113	180835134	180835140	7mer-m8	180835120	180835141	145	-16.15
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-125a-5p	180835137	180835143	7mer-1a	180835118	180835143	140	-25.21
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-345-3p	180835136	180835143	8mer-1a	180835122	180835143	145	-19.64
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4539	180835134	180835140	7mer-m8	180835120	180835141	147	-15.27
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-670-5p	180835137	180835143	7mer-m8	180835126	180835144	146	-15.7
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-12113	180835134	180835140	7mer-m8	180835120	180835141	145	-16.15
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-125a-5p	180835137	180835143	7mer-1a	180835118	180835143	140	-25.21
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-345-3p	180835136	180835143	8mer-1a	180835122	180835143	145	-19.64
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4539	180835134	180835140	7mer-m8	180835120	180835141	147	-15.27
CAediting_455311	chr5_180835140_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-670-5p	180835137	180835143	7mer-m8	180835126	180835144	146	-15.7
CAediting_455314	chr5_180835317_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-1295b-5p	180835314	180835320	7mer-m8	180835301	180835321	147	-14.94
CAediting_455314	chr5_180835317_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-1912-3p	180835314	180835320	7mer-m8	180835299	180835321	147	-19.97
CAediting_455314	chr5_180835317_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-711	180835316	180835322	7mer-m8	180835301	180835323	155	-22.53
CAediting_455314	chr5_180835317_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-1295b-5p	180835314	180835320	7mer-m8	180835301	180835321	147	-14.94
CAediting_455314	chr5_180835317_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-1912-3p	180835314	180835320	7mer-m8	180835299	180835321	147	-19.97
CAediting_455314	chr5_180835317_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-711	180835316	180835322	7mer-m8	180835301	180835323	155	-22.53
CAediting_455314	chr5_180835317_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-1295b-5p	180835314	180835320	7mer-m8	180835301	180835321	147	-14.94
CAediting_455314	chr5_180835317_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-1912-3p	180835314	180835320	7mer-m8	180835299	180835321	147	-19.97
CAediting_455314	chr5_180835317_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-711	180835316	180835322	7mer-m8	180835301	180835323	155	-22.53
CAediting_455315	chr5_180835373_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-4324	180835368	180835374	7mer-m8	180835355	180835375	152	-19.13
CAediting_455315	chr5_180835373_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-6761-5p	180835367	180835373	7mer-m8	180835354	180835374	159	-24.7
CAediting_455315	chr5_180835373_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4324	180835368	180835374	7mer-m8	180835355	180835375	152	-19.13
CAediting_455315	chr5_180835373_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-6761-5p	180835367	180835373	7mer-m8	180835354	180835374	159	-24.7
CAediting_455315	chr5_180835373_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4324	180835368	180835374	7mer-m8	180835355	180835375	152	-19.13
CAediting_455315	chr5_180835373_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-6761-5p	180835367	180835373	7mer-m8	180835354	180835374	159	-24.7
CAediting_455316	chr5_180835380_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-3926	180835377	180835383	7mer-m8	180835366	180835384	143	-18.2
CAediting_455316	chr5_180835380_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-4753-5p	180835379	180835385	7mer-m8	180835364	180835386	167	-29.5
CAediting_455316	chr5_180835380_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-3926	180835377	180835383	7mer-m8	180835366	180835384	143	-18.2
CAediting_455316	chr5_180835380_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4753-5p	180835379	180835385	7mer-m8	180835364	180835386	167	-29.5
CAediting_455316	chr5_180835380_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-3926	180835377	180835383	7mer-m8	180835366	180835384	143	-18.2
CAediting_455316	chr5_180835380_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4753-5p	180835379	180835385	7mer-m8	180835364	180835386	167	-29.5
CAediting_455320	chr5_180835420_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-4740-3p	180835416	180835422	7mer-m8	180835402	180835423	142	-19.4
CAediting_455320	chr5_180835420_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-4747-3p	180835419	180835425	7mer-m8	180835405	180835426	146	-20.61
CAediting_455320	chr5_180835420_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4740-3p	180835416	180835422	7mer-m8	180835402	180835423	142	-19.4
CAediting_455320	chr5_180835420_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4747-3p	180835419	180835425	7mer-m8	180835405	180835426	146	-20.61
CAediting_455320	chr5_180835420_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4740-3p	180835416	180835422	7mer-m8	180835402	180835423	142	-19.4
CAediting_455320	chr5_180835420_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4747-3p	180835419	180835425	7mer-m8	180835405	180835426	146	-20.61
CAediting_455304	chr5_180835113_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-6818-3p	180835110	180835117	8mer-1a	180835096	180835117	155	-17.27
CAediting_455304	chr5_180835113_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-6895-3p	180835109	180835116	8mer-1a	180835093	180835116	155	-24.17
CAediting_455304	chr5_180835113_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-6818-3p	180835110	180835117	8mer-1a	180835096	180835117	155	-17.27
CAediting_455304	chr5_180835113_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-6895-3p	180835109	180835116	8mer-1a	180835093	180835116	155	-24.17
CAediting_455304	chr5_180835113_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-6818-3p	180835110	180835117	8mer-1a	180835096	180835117	155	-17.27
CAediting_455304	chr5_180835113_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-6895-3p	180835109	180835116	8mer-1a	180835093	180835116	155	-24.17
CAediting_455307	chr5_180835122_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-6767-3p	180835118	180835124	7mer-m8	180835104	180835125	167	-25.02
CAediting_455307	chr5_180835122_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-6767-3p	180835118	180835124	7mer-m8	180835104	180835125	167	-25.02
CAediting_455307	chr5_180835122_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-6767-3p	180835118	180835124	7mer-m8	180835104	180835125	167	-25.02
CAediting_455313	chr5_180835304_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-4457	180835298	180835304	7mer-m8	180835284	180835305	148	-16.37
CAediting_455313	chr5_180835304_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-891a-3p	180835302	180835309	8mer-1a	180835288	180835309	148	-18.67
CAediting_455313	chr5_180835304_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4457	180835298	180835304	7mer-m8	180835284	180835305	148	-16.37
CAediting_455313	chr5_180835304_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-891a-3p	180835302	180835309	8mer-1a	180835288	180835309	148	-18.67
CAediting_455313	chr5_180835304_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4457	180835298	180835304	7mer-m8	180835284	180835305	148	-16.37
CAediting_455313	chr5_180835304_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-891a-3p	180835302	180835309	8mer-1a	180835288	180835309	148	-18.67
CAediting_455318	chr5_180835388_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-6854-5p	180835385	180835390	6mer	180835368	180835391	143	-20.17
CAediting_455318	chr5_180835388_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-99b-3p	180835386	180835392	7mer-1a	180835371	180835392	143	-15.86
CAediting_455318	chr5_180835388_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-6854-5p	180835385	180835390	6mer	180835368	180835391	143	-20.17
CAediting_455318	chr5_180835388_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-99b-3p	180835386	180835392	7mer-1a	180835371	180835392	143	-15.86
CAediting_455318	chr5_180835388_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-6854-5p	180835385	180835390	6mer	180835368	180835391	143	-20.17
CAediting_455318	chr5_180835388_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-99b-3p	180835386	180835392	7mer-1a	180835371	180835392	143	-15.86
CAediting_455321	chr5_180835430_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-320e	180835427	180835433	7mer-m8	180835413	180835434	151	-21.17
CAediting_455321	chr5_180835430_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-320e	180835427	180835433	7mer-m8	180835413	180835434	151	-21.17
CAediting_455321	chr5_180835430_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-320e	180835427	180835433	7mer-m8	180835413	180835434	151	-21.17

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-218-5p	180835116	180835122	7mer-m8	180835102	180835123	150	-15.43
CAediting_455307	chr5_180835122_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-218-5p	180835116	180835122	7mer-m8	180835102	180835123	150	-15.43
CAediting_455320	chr5_180835420_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4251	180835415	180835421	7mer-m8	180835405	180835422	152	-19.44
CAediting_455320	chr5_180835420_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4324	180835416	180835422	7mer-m8	180835404	180835423	141	-10.33
CAediting_455316	chr5_180835380_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-4509	180835375	180835381	7mer-m8	180835361	180835382	151	-13.32
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-636	180835115	180835122	8mer-1a	180835100	180835122	155	-20.46
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-218-5p	180835116	180835122	7mer-m8	180835102	180835123	150	-15.43
CAediting_455307	chr5_180835122_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-218-5p	180835116	180835122	7mer-m8	180835102	180835123	150	-15.43
CAediting_455320	chr5_180835420_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-4324	180835416	180835422	7mer-m8	180835404	180835423	141	-10.33
CAediting_455316	chr5_180835380_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-4509	180835375	180835381	7mer-m8	180835361	180835382	151	-13.32
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-636	180835115	180835122	8mer-1a	180835100	180835122	155	-20.46
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-218-5p	180835116	180835122	7mer-m8	180835102	180835123	150	-15.43
CAediting_455307	chr5_180835122_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-218-5p	180835116	180835122	7mer-m8	180835102	180835123	150	-15.43
CAediting_455320	chr5_180835420_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4251	180835415	180835421	7mer-m8	180835405	180835422	152	-19.44
CAediting_455320	chr5_180835420_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4324	180835416	180835422	7mer-m8	180835404	180835423	141	-10.33
CAediting_455316	chr5_180835380_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-4509	180835375	180835381	7mer-m8	180835361	180835382	151	-13.32
CAediting_455306	chr5_180835117_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-636	180835115	180835122	8mer-1a	180835100	180835122	155	-20.46

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-605-3p	180830987	180830993	7mer-m8	180830973	180830994	141	-15.73
CAediting_1229414	chr17_67471546_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-548aa	180835517	180835524	8mer-1a	180835500	180835524	152	-8.15
CAediting_1229415	chr17_67471547_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-548aa	180831088	180831094	7mer-m8	180831072	180831095	150	-10.77
CAediting_228905	chr2_188297554_+	ENSG00000245060.5	ENST00000502162.2	hsa-miR-561-3p	180832817	180832823	7mer-m8	180832803	180832824	160	-20.95
CAediting_1229414	chr17_67471546_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-548aa	180835517	180835524	8mer-1a	180835500	180835524	152	-8.15
CAediting_1229415	chr17_67471547_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-548aa	180831088	180831094	7mer-m8	180831072	180831095	150	-10.77
CAediting_1229413	chr17_67471544_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-548aa	180831402	180831408	7mer-m8	180831387	180831409	142	-9.76
CAediting_1229414	chr17_67471546_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-548aa	180835517	180835524	8mer-1a	180835500	180835524	152	-8.15
CAediting_580943	chr7_100356700_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-6840-3p	180831501	180831507	7mer-m8	180831483	180831508	150	-29.06
CAediting_1524209	chrX_134546392_-	ENSG00000245060.5	ENST00000502162.2	hsa-miR-503-5p	180831107	180831113	7mer-m8	180831090	180831114	145	-25.63
CAediting_468389	chr6_31355314_-	ENSG00000245060.5	ENST00000501855.5	hsa-miR-6891-5p	180830990	180830996	7mer-m8	180830980	180830997	155	-23.59
CAediting_1524209	chrX_134546392_-	ENSG00000245060.5	ENST00000501855.5	hsa-miR-503-5p	180831107	180831113	7mer-m8	180831090	180831114	145	-25.63
CAediting_468389	chr6_31355314_-	ENSG00000245060.5	ENST00000501937.2	hsa-miR-6891-5p	180831744	180831750	7mer-m8	180831733	180831751	154	-20.35

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_468389	chr6_31355314_-	ENSG00000245060.5	ENST00000502162.2	hsa-miR-6891-5p	180835406	180835412	7mer-m8	180835395	180835413	150	-20.01
CAediting_748296	chr10_51299626_+	ENSG00000245060.5	ENST00000501855.5	hsa-miR-605-3p	180831797	180831803	7mer-m8	180831783	180831804	152	-16.32
CAediting_468389	chr6_31355314_-	ENSG00000245060.5	ENST00000501855.5	hsa-miR-6891-5p	180835406	180835412	7mer-m8	180835395	180835413	150	-20.01
CAediting_748296	chr10_51299626_+	ENSG00000245060.5	ENST00000501937.2	hsa-miR-605-3p	180831797	180831803	7mer-m8	180831783	180831804	152	-16.32
CAediting_468389	chr6_31355314_-	ENSG00000245060.5	ENST00000501937.2	hsa-miR-6891-5p	180835406	180835412	7mer-m8	180835395	180835413	150	-20.01

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for LINC00847

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000501855.5	lincRNA
ENST00000501937.2	lincRNA
ENST00000502162.2	lincRNA

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_455301	ENST00000501855.5	chr5_180835080_+	-687.80	-681.20	-693.00
CAediting_455302	ENST00000501855.5	chr5_180835096_+	-680.90	-681.20	-693.00
CAediting_455303	ENST00000501855.5	chr5_180835110_+	-680.30	-681.20	-693.00
CAediting_455304	ENST00000501855.5	chr5_180835113_+	-681.30	-681.20	-693.00
CAediting_455305	ENST00000501855.5	chr5_180835114_+	-681.20	-681.20	-693.00
CAediting_455306	ENST00000501855.5	chr5_180835117_+	-683.60	-681.20	-693.00
CAediting_455307	ENST00000501855.5	chr5_180835122_+	-680.80	-681.20	-693.00
CAediting_455308	ENST00000501855.5	chr5_180835129_+	-681.20	-681.20	-693.00
CAediting_455309	ENST00000501855.5	chr5_180835130_+	-681.10	-681.20	-693.00
CAediting_455310	ENST00000501855.5	chr5_180835139_+	-680.90	-681.20	-693.00
CAediting_455311	ENST00000501855.5	chr5_180835140_+	-680.90	-681.20	-693.00
CAediting_455312	ENST00000501855.5	chr5_180835147_+	-680.90	-681.20	-693.00
CAediting_455313	ENST00000501855.5	chr5_180835304_+	-681.20	-681.20	-693.00
CAediting_455314	ENST00000501855.5	chr5_180835317_+	-687.80	-681.20	-693.00
CAediting_455315	ENST00000501855.5	chr5_180835373_+	-680.90	-681.20	-693.00
CAediting_455316	ENST00000501855.5	chr5_180835380_+	-680.60	-681.20	-693.00
CAediting_455317	ENST00000501855.5	chr5_180835387_+	-680.70	-681.20	-693.00
CAediting_455318	ENST00000501855.5	chr5_180835388_+	-681.20	-681.20	-693.00
CAediting_455319	ENST00000501855.5	chr5_180835396_+	-683.20	-681.20	-693.00
CAediting_455320	ENST00000501855.5	chr5_180835420_+	-680.50	-681.20	-693.00
CAediting_455321	ENST00000501855.5	chr5_180835430_+	-681.20	-681.20	-693.00
CAediting_455301	ENST00000501937.2	chr5_180835080_+	-695.00	-688.40	-700.20
CAediting_455302	ENST00000501937.2	chr5_180835096_+	-688.10	-688.40	-700.20
CAediting_455303	ENST00000501937.2	chr5_180835110_+	-687.50	-688.40	-700.20
CAediting_455304	ENST00000501937.2	chr5_180835113_+	-688.50	-688.40	-700.20
CAediting_455305	ENST00000501937.2	chr5_180835114_+	-688.40	-688.40	-700.20
CAediting_455306	ENST00000501937.2	chr5_180835117_+	-690.80	-688.40	-700.20
CAediting_455307	ENST00000501937.2	chr5_180835122_+	-688.00	-688.40	-700.20
CAediting_455308	ENST00000501937.2	chr5_180835129_+	-688.40	-688.40	-700.20
CAediting_455309	ENST00000501937.2	chr5_180835130_+	-688.30	-688.40	-700.20
CAediting_455310	ENST00000501937.2	chr5_180835139_+	-688.10	-688.40	-700.20
CAediting_455311	ENST00000501937.2	chr5_180835140_+	-688.10	-688.40	-700.20
CAediting_455312	ENST00000501937.2	chr5_180835147_+	-688.10	-688.40	-700.20
CAediting_455313	ENST00000501937.2	chr5_180835304_+	-688.40	-688.40	-700.20
CAediting_455314	ENST00000501937.2	chr5_180835317_+	-695.00	-688.40	-700.20
CAediting_455315	ENST00000501937.2	chr5_180835373_+	-688.10	-688.40	-700.20
CAediting_455316	ENST00000501937.2	chr5_180835380_+	-687.80	-688.40	-700.20
CAediting_455317	ENST00000501937.2	chr5_180835387_+	-687.90	-688.40	-700.20
CAediting_455318	ENST00000501937.2	chr5_180835388_+	-688.40	-688.40	-700.20
CAediting_455319	ENST00000501937.2	chr5_180835396_+	-690.40	-688.40	-700.20
CAediting_455320	ENST00000501937.2	chr5_180835420_+	-687.70	-688.40	-700.20
CAediting_455321	ENST00000501937.2	chr5_180835430_+	-688.40	-688.40	-700.20
CAediting_455301	ENST00000502162.2	chr5_180835080_+	-652.60	-646.00	-657.80
CAediting_455302	ENST00000502162.2	chr5_180835096_+	-645.70	-646.00	-657.80
CAediting_455303	ENST00000502162.2	chr5_180835110_+	-645.10	-646.00	-657.80
CAediting_455304	ENST00000502162.2	chr5_180835113_+	-646.10	-646.00	-657.80
CAediting_455305	ENST00000502162.2	chr5_180835114_+	-646.00	-646.00	-657.80
CAediting_455306	ENST00000502162.2	chr5_180835117_+	-648.40	-646.00	-657.80
CAediting_455307	ENST00000502162.2	chr5_180835122_+	-645.60	-646.00	-657.80
CAediting_455308	ENST00000502162.2	chr5_180835129_+	-646.00	-646.00	-657.80
CAediting_455309	ENST00000502162.2	chr5_180835130_+	-645.90	-646.00	-657.80
CAediting_455310	ENST00000502162.2	chr5_180835139_+	-645.70	-646.00	-657.80
CAediting_455311	ENST00000502162.2	chr5_180835140_+	-645.70	-646.00	-657.80
CAediting_455312	ENST00000502162.2	chr5_180835147_+	-645.70	-646.00	-657.80
CAediting_455313	ENST00000502162.2	chr5_180835304_+	-646.00	-646.00	-657.80
CAediting_455314	ENST00000502162.2	chr5_180835317_+	-652.60	-646.00	-657.80
CAediting_455315	ENST00000502162.2	chr5_180835373_+	-645.70	-646.00	-657.80
CAediting_455316	ENST00000502162.2	chr5_180835380_+	-645.40	-646.00	-657.80
CAediting_455317	ENST00000502162.2	chr5_180835387_+	-645.50	-646.00	-657.80
CAediting_455318	ENST00000502162.2	chr5_180835388_+	-646.00	-646.00	-657.80
CAediting_455319	ENST00000502162.2	chr5_180835396_+	-648.00	-646.00	-657.80
CAediting_455320	ENST00000502162.2	chr5_180835420_+	-645.30	-646.00	-657.80
CAediting_455321	ENST00000502162.2	chr5_180835430_+	-646.00	-646.00	-657.80

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Relation with ADAR for LINC00847

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_455301	chr5_180835080_+	1.81476338562885e-28	0.515495364685106	0.0133449924955711	0.123787889893209	.	.
LGG	CAediting_455301	chr5_180835080_+	7.96822691867504e-08	0.230773048510535	.	.	0.000171906017468022	0.162647190250558
BRCA	CAediting_455301	chr5_180835080_+	7.69651468244948e-66	0.484565201620067	.	.	.	.
LIHC	CAediting_455301	chr5_180835080_+	1.3187287157713e-05	0.229607219133706	.	.	.	.
CESC	CAediting_455301	chr5_180835080_+	3.77712988719338e-18	0.472547820190012	.	.	.	.
LUAD	CAediting_455301	chr5_180835080_+	1.97001609697991e-16	0.350330651887455	.	.	.	.
COAD	CAediting_455301	chr5_180835080_+	5.01419526439681e-13	0.362053576532248	0.00684898567700574	0.139607581020712	.	.
LUSC	CAediting_455301	chr5_180835080_+	4.11426760918159e-23	0.42329050459472	0.0125552999284383	0.111672927258813	.	.
GBM	CAediting_455301	chr5_180835080_+	5.37650350889086e-09	0.431204021137316	.	.	.	.
PRAD	CAediting_455301	chr5_180835080_+	9.61634977848736e-23	0.420757929421228	.	.	.	.
HNSC	CAediting_455301	chr5_180835080_+	7.72440555024449e-21	0.412316672708252	0.00241286273235125	0.139194816699629	.	.
STAD	CAediting_455301	chr5_180835080_+	3.51785020233747e-09	0.314649779268047	.	.	.	.
KICH	CAediting_455301	chr5_180835080_+	0.000195434388091034	0.449366590614034	.	.	.	.
THCA	CAediting_455301	chr5_180835080_+	9.38101926918775e-22	0.407231344383044	.	.	.	.
KIRC	CAediting_455301	chr5_180835080_+	1.40010384693416e-14	0.32474568661594	.	.	.	.
UCEC	CAediting_455301	chr5_180835080_+	6.19024050481315e-23	0.45971394423261	0.0250654221730709	0.110374146772265	.	.
KIRP	CAediting_455301	chr5_180835080_+	2.66339555423468e-06	0.273518896950705	.	.	.	.
ACC	CAediting_455301	chr5_180835080_+	0.00139665985723294	0.367168779258824	.	.	.	.
ESCA	CAediting_455301	chr5_180835080_+	4.15823477074587e-06	0.354795336871867	.	.	.	.
LAML	CAediting_455301	chr5_180835080_+	0.001725303062557	0.264411480589681	.	.	.	.
OV	CAediting_455301	chr5_180835080_+	1.66006783963134e-13	0.36990645424719	.	.	.	.
PAAD	CAediting_455301	chr5_180835080_+	1.88879394853141e-07	0.378539895992518	.	.	.	.
PCPG	CAediting_455301	chr5_180835080_+	1.03140917643656e-08	0.413835230348497	.	.	.	.
SKCM	CAediting_455301	chr5_180835080_+	4.13537923415305e-31	0.500093169727112	.	.	.	.
UCS	CAediting_455301	chr5_180835080_+	4.02416972594728e-05	0.532699616214341	.	.	.	.
UVM	CAediting_455301	chr5_180835080_+	0.00153957421947456	0.348412908479265	.	.	.	.
MESO	CAediting_455301	chr5_180835080_+	2.09550336222364e-05	0.443820299249766	.	.	.	.
READ	CAediting_455301	chr5_180835080_+	1.55441895117237e-06	0.417485342416164	.	.	.	.
SARC	CAediting_455301	chr5_180835080_+	1.70446661565309e-12	0.419324926627226	.	.	.	.
TGCT	CAediting_455301	chr5_180835080_+	1.80470136772377e-08	0.464335781680471	.	.	.	.
THYM	CAediting_455301	chr5_180835080_+	2.8656664591814e-08	0.481945847632683	.	.	0.00475939296998854	0.257121675286242
BLCA	CAediting_455314	chr5_180835317_+	0.0341262647955219	0.261223350864231	.	.	.	.
LIHC	CAediting_455314	chr5_180835317_+	0.0358243056911918	0.196823360136048	.	.	.	.
LUAD	CAediting_455314	chr5_180835317_+	0.00129235134769131	0.374514879523215	.	.	.	.
KIRC	CAediting_455314	chr5_180835317_+	.	.	.	.	4.26879422999057e-10	0.665930756463585
BLCA	CAediting_455315	chr5_180835373_+	4.38394234865135e-22	0.460065164537113	.	.	.	.
LGG	CAediting_455315	chr5_180835373_+	2.53271666701025e-11	0.284712430051386	.	.	.	.
BRCA	CAediting_455315	chr5_180835373_+	6.2538728189926e-81	0.531286214255995	.	.	.	.
LIHC	CAediting_455315	chr5_180835373_+	3.31926456535401e-11	0.335406734749347	.	.	.	.
CESC	CAediting_455315	chr5_180835373_+	1.15292758418604e-07	0.299249843262018	.	.	.	.
LUAD	CAediting_455315	chr5_180835373_+	2.49599949823172e-27	0.449918677488543	.	.	.	.
COAD	CAediting_455315	chr5_180835373_+	3.19015028090908e-10	0.331625940801804	0.0140046433116373	0.132764537621767	.	.
LUSC	CAediting_455315	chr5_180835373_+	4.65523773390543e-22	0.415281972449793	0.0323862500117084	0.0961884436717682	.	.
GBM	CAediting_455315	chr5_180835373_+	1.0754438026724e-08	0.423413042405769	.	.	.	.
PRAD	CAediting_455315	chr5_180835373_+	7.14429939531667e-16	0.351193624636359	.	.	.	.
HNSC	CAediting_455315	chr5_180835373_+	4.03658390007806e-12	0.308350863486448	.	.	.	.
STAD	CAediting_455315	chr5_180835373_+	1.97593146726726e-09	0.320779647836954	.	.	.	.
KICH	CAediting_455315	chr5_180835373_+	0.000112257414120745	0.467436673882753	0.0460477035760099	0.252310771592265	.	.
THCA	CAediting_455315	chr5_180835373_+	3.47783835558271e-19	0.382555326220884	.	.	.	.
KIRC	CAediting_455315	chr5_180835373_+	8.64473695503736e-12	0.290554484853398	.	.	.	.
UCEC	CAediting_455315	chr5_180835373_+	6.90544519161443e-17	0.399202753210044	.	.	.	.
KIRP	CAediting_455315	chr5_180835373_+	8.88305537238319e-06	0.260218705193569	.	.	.	.
ACC	CAediting_455315	chr5_180835373_+	1.76346523095392e-10	0.66224816141152	.	.	.	.
ESCA	CAediting_455315	chr5_180835373_+	9.30746167713149e-05	0.303991696163884	.	.	.	.
LAML	CAediting_455315	chr5_180835373_+	0.0305709346697424	0.202673858244715	.	.	.	.
OV	CAediting_455315	chr5_180835373_+	1.48676500052016e-15	0.39977474286189	.	.	.	.
PAAD	CAediting_455315	chr5_180835373_+	9.6558298932196e-07	0.357473326706584	.	.	.	.
PCPG	CAediting_455315	chr5_180835373_+	2.55100450289525e-08	0.398383074322315	0.00595534993774849	0.203130357965349	.	.
SKCM	CAediting_455315	chr5_180835373_+	3.10859190821853e-26	0.462933172738114	.	.	.	.
UCS	CAediting_455315	chr5_180835373_+	0.000138731851809697	0.499809744193803	.	.	.	.
UVM	CAediting_455315	chr5_180835373_+	0.00043768763696333	0.383986975687796	.	.	.	.
MESO	CAediting_455315	chr5_180835373_+	4.69285620788063e-05	0.428882144692108	.	.	.	.
READ	CAediting_455315	chr5_180835373_+	0.00056827753315027	0.323411172308965	.	.	.	.
SARC	CAediting_455315	chr5_180835373_+	5.81762257779364e-17	0.487985643982215	.	.	.	.
TGCT	CAediting_455315	chr5_180835373_+	2.12679385946987e-07	0.420239291580138	.	.	.	.
THYM	CAediting_455315	chr5_180835373_+	2.1409742842147e-10	0.540929042618025	.	.	0.0193086502814475	0.214228328271844
BRCA	CAediting_455316	chr5_180835380_+	.	.	.	.	0.00461076975896642	0.309873872862412

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Relation with cancer stages for LINC00847

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BLCA	pathologic_stage	CAediting_455315	chr5_180835373_+	0.0216119223810246	0.115705919473852
BRCA	pathologic_stage	CAediting_455315	chr5_180835373_+	0.0231059417614451	0.0692828784021367
CESC	clinical_stage	CAediting_455315	chr5_180835373_+	0.0466284081069251	-0.115943763459802
HNSC	clinical_stage	CAediting_455315	chr5_180835373_+	0.0190569044417783	0.108110602907925
HNSC	pathologic_stage	CAediting_455315	chr5_180835373_+	0.00895893289585185	0.127240090297351
KIRC	pathologic_stage	CAediting_455301	chr5_180835080_+	1.2426001581739e-05	0.188209440946204
KIRC	pathologic_stage	CAediting_455315	chr5_180835373_+	9.92759917123755e-11	0.276377452415251
KIRP	clinical_stage	CAediting_455301	chr5_180835080_+	0.00172329529916539	0.221368760797916
KIRP	clinical_stage	CAediting_455315	chr5_180835373_+	2.4553381967537e-06	0.330038433236941
KIRP	pathologic_stage	CAediting_455301	chr5_180835080_+	0.00176677020952767	0.194136238663368
KIRP	pathologic_stage	CAediting_455315	chr5_180835373_+	1.21683251135897e-06	0.297850410500345
LUSC	pathologic_stage	CAediting_455301	chr5_180835080_+	0.0303310369628244	0.0973575806084847
LUSC	pathologic_stage	CAediting_455315	chr5_180835373_+	0.0217325945160319	0.10355766300023
STAD	pathologic_stage	CAediting_455315	chr5_180835373_+	0.0295720304106653	0.121844137720808
THCA	pathologic_stage	CAediting_455301	chr5_180835080_+	0.00760566540899711	0.118882388355661
THCA	pathologic_stage	CAediting_455315	chr5_180835373_+	0.000306118615803828	0.160321420516807

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Relation with survival for LINC00847

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
CESC	CAediting_455315	chr5_180835373_+	0.00438429722177092	0.040423	0.155628

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RelatedDrugs for LINC00847

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LINC00847

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene