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Editing gene: SCAMP1-AS1 (CAeditome ID:728769)

Gene summary for SCAMP1-AS1

Gene summary

Gene information	Gene symbol	SCAMP1-AS1
	Gene ID	728769
	Gene name	SCAMP1 antisense RNA 1
	Synonyms	-
	Cytomap	5q14.1
	Type of gene	ncRNA
	Description	CTD-2037K23.2
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for SCAMP1-AS1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000245556.2

RNA A-to-I editing events in Cancer.

CAediting_416821(78357551, -), CAediting_416822(78357557, -), CAediting_416823(78357569, -), CAediting_416824(78357584, -), CAediting_416825(78357623, -), CAediting_416826(78357635, -), CAediting_416827(78357649, -), CAediting_416828(78357666, -), CAediting_416829(78357667, -), CAediting_416830(78357729, -), CAediting_416831(78357755, -), CAediting_416832(78359417, -), CAediting_416833(78359419, -), CAediting_416834(78359423, -), CAediting_416835(78359425, -), CAediting_416836(78359429, -), CAediting_416837(78359455, -), CAediting_416838(78359457, -), CAediting_416839(78359466, -), CAediting_416840(78359479, -), CAediting_416841(78359495, -), CAediting_416842(78359496, -), CAediting_416843(78359501, -), CAediting_416844(78359505, -), CAediting_416845(78359506, -), CAediting_416846(78359511, -), CAediting_416847(78359518, -), CAediting_416848(78359522, -), CAediting_416849(78359528, -), CAediting_416850(78359547, -), CAediting_416851(78359554, -), CAediting_416852(78359557, -), CAediting_416853(78359561, -), CAediting_416854(78359565, -), CAediting_416855(78359566, -), CAediting_416856(78359567, -), CAediting_416857(78359568, -), CAediting_416858(78359569, -), CAediting_416859(78359572, -), CAediting_416860(78359584, -), CAediting_416861(78359586, -), CAediting_416862(78359592, -), CAediting_416863(78359594, -), CAediting_416864(78359604, -), CAediting_416865(78359607, -), CAediting_416866(78359608, -), CAediting_416867(78359615, -), CAediting_416868(78359645, -), CAediting_416869(78359655, -), CAediting_416870(78359662, -),

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RNA editing positional annotations for SCAMP1-AS1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_416821	chr5_78357551_-	ncRNA_intronic
CAediting_416822	chr5_78357557_-	ncRNA_intronic
CAediting_416823	chr5_78357569_-	ncRNA_intronic
CAediting_416824	chr5_78357584_-	ncRNA_intronic
CAediting_416825	chr5_78357623_-	ncRNA_intronic
CAediting_416826	chr5_78357635_-	ncRNA_intronic
CAediting_416827	chr5_78357649_-	ncRNA_intronic
CAediting_416828	chr5_78357666_-	ncRNA_intronic
CAediting_416829	chr5_78357667_-	ncRNA_intronic
CAediting_416830	chr5_78357729_-	ncRNA_intronic
CAediting_416831	chr5_78357755_-	ncRNA_intronic
CAediting_416832	chr5_78359417_-	ncRNA_exonic
CAediting_416833	chr5_78359419_-	ncRNA_exonic
CAediting_416834	chr5_78359423_-	ncRNA_exonic
CAediting_416835	chr5_78359425_-	ncRNA_exonic
CAediting_416836	chr5_78359429_-	ncRNA_exonic
CAediting_416837	chr5_78359455_-	ncRNA_exonic
CAediting_416838	chr5_78359457_-	ncRNA_exonic
CAediting_416839	chr5_78359466_-	ncRNA_exonic
CAediting_416840	chr5_78359479_-	ncRNA_exonic
CAediting_416841	chr5_78359495_-	ncRNA_exonic
CAediting_416842	chr5_78359496_-	ncRNA_exonic
CAediting_416843	chr5_78359501_-	ncRNA_exonic
CAediting_416844	chr5_78359505_-	ncRNA_exonic
CAediting_416845	chr5_78359506_-	ncRNA_exonic
CAediting_416846	chr5_78359511_-	ncRNA_exonic
CAediting_416847	chr5_78359518_-	ncRNA_exonic
CAediting_416848	chr5_78359522_-	ncRNA_exonic
CAediting_416849	chr5_78359528_-	ncRNA_exonic
CAediting_416850	chr5_78359547_-	ncRNA_exonic
CAediting_416851	chr5_78359554_-	ncRNA_exonic
CAediting_416852	chr5_78359557_-	ncRNA_exonic
CAediting_416853	chr5_78359561_-	ncRNA_exonic
CAediting_416854	chr5_78359565_-	ncRNA_exonic
CAediting_416855	chr5_78359566_-	ncRNA_exonic
CAediting_416856	chr5_78359567_-	ncRNA_exonic
CAediting_416857	chr5_78359568_-	ncRNA_exonic
CAediting_416858	chr5_78359569_-	ncRNA_exonic
CAediting_416859	chr5_78359572_-	ncRNA_exonic
CAediting_416860	chr5_78359584_-	ncRNA_exonic
CAediting_416861	chr5_78359586_-	ncRNA_exonic
CAediting_416862	chr5_78359592_-	ncRNA_exonic
CAediting_416863	chr5_78359594_-	ncRNA_exonic
CAediting_416864	chr5_78359604_-	ncRNA_exonic
CAediting_416865	chr5_78359607_-	ncRNA_exonic
CAediting_416866	chr5_78359608_-	ncRNA_exonic
CAediting_416867	chr5_78359615_-	ncRNA_exonic
CAediting_416868	chr5_78359645_-	ncRNA_exonic
CAediting_416869	chr5_78359655_-	ncRNA_exonic
CAediting_416870	chr5_78359662_-	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_416821	chr5_78357551_-	SINE	Alu	AluSz
CAediting_416822	chr5_78357557_-	SINE	Alu	AluSz
CAediting_416823	chr5_78357569_-	SINE	Alu	AluSz
CAediting_416824	chr5_78357584_-	SINE	Alu	AluSz
CAediting_416825	chr5_78357623_-	SINE	Alu	AluSz
CAediting_416826	chr5_78357635_-	SINE	Alu	AluSz
CAediting_416827	chr5_78357649_-	SINE	Alu	AluSz
CAediting_416828	chr5_78357666_-	SINE	Alu	AluSz
CAediting_416829	chr5_78357667_-	SINE	Alu	AluSz
CAediting_416830	chr5_78357729_-	SINE	Alu	AluSz
CAediting_416831	chr5_78357755_-	SINE	Alu	AluSz
CAediting_416832	chr5_78359417_-	SINE	Alu	AluSx4
CAediting_416833	chr5_78359419_-	SINE	Alu	AluSx4
CAediting_416834	chr5_78359423_-	SINE	Alu	AluSx4
CAediting_416835	chr5_78359425_-	SINE	Alu	AluSx4
CAediting_416836	chr5_78359429_-	SINE	Alu	AluSx4
CAediting_416837	chr5_78359455_-	SINE	Alu	AluSx4
CAediting_416838	chr5_78359457_-	SINE	Alu	AluSx4
CAediting_416839	chr5_78359466_-	SINE	Alu	AluSx4
CAediting_416840	chr5_78359479_-	SINE	Alu	AluSx4
CAediting_416841	chr5_78359495_-	SINE	Alu	AluSx4
CAediting_416842	chr5_78359496_-	SINE	Alu	AluSx4
CAediting_416843	chr5_78359501_-	SINE	Alu	AluSx4
CAediting_416844	chr5_78359505_-	SINE	Alu	AluSx4
CAediting_416845	chr5_78359506_-	SINE	Alu	AluSx4
CAediting_416846	chr5_78359511_-	SINE	Alu	AluSx4
CAediting_416847	chr5_78359518_-	SINE	Alu	AluSx4
CAediting_416848	chr5_78359522_-	SINE	Alu	AluSx4
CAediting_416849	chr5_78359528_-	SINE	Alu	AluSx4
CAediting_416850	chr5_78359547_-	SINE	Alu	AluSx4
CAediting_416851	chr5_78359554_-	SINE	Alu	AluSx4
CAediting_416852	chr5_78359557_-	SINE	Alu	AluSx4
CAediting_416853	chr5_78359561_-	SINE	Alu	AluSx4
CAediting_416854	chr5_78359565_-	SINE	Alu	AluSx4
CAediting_416855	chr5_78359566_-	SINE	Alu	AluSx4
CAediting_416856	chr5_78359567_-	SINE	Alu	AluSx4
CAediting_416857	chr5_78359568_-	SINE	Alu	AluSx4
CAediting_416858	chr5_78359569_-	SINE	Alu	AluSx4
CAediting_416859	chr5_78359572_-	SINE	Alu	AluSx4
CAediting_416860	chr5_78359584_-	SINE	Alu	AluSx4
CAediting_416861	chr5_78359586_-	SINE	Alu	AluSx4
CAediting_416862	chr5_78359592_-	SINE	Alu	AluSx4
CAediting_416863	chr5_78359594_-	SINE	Alu	AluSx4
CAediting_416864	chr5_78359604_-	SINE	Alu	AluSx4
CAediting_416865	chr5_78359607_-	SINE	Alu	AluSx4
CAediting_416866	chr5_78359608_-	SINE	Alu	AluSx4
CAediting_416867	chr5_78359615_-	SINE	Alu	AluSx4
CAediting_416868	chr5_78359645_-	SINE	Alu	AluSx4
CAediting_416869	chr5_78359655_-	SINE	Alu	AluSx4
CAediting_416870	chr5_78359662_-	SINE	Alu	AluSx4

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RNA A-to-I editing events in the alternative splicing sites for SCAMP1-AS1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000245556.2.SCAMP1-AS1.

Correlation between RNA A-to-I editing and PSI for ENSG00000245556.2.SCAMP1-AS1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SCAMP1-AS1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SCAMP1-AS1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SCAMP1-AS1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_416839	chr5_78359466_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6511b-3p	78359461	78359466	6mer	78359460	78359482	140	-24.97
CAediting_416847	chr5_78359518_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-1207-3p	78359518	78359524	7mer-m8	78359517	78359535	145	-13.53
CAediting_416847	chr5_78359518_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-2278	78359514	78359520	7mer-m8	78359513	78359534	150	-17.7
CAediting_416847	chr5_78359518_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-646	78359516	78359522	7mer-m8	78359515	78359534	148	-21.05
CAediting_416847	chr5_78359518_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6501-3p	78359513	78359519	7mer-m8	78359512	78359533	167	-30.5
CAediting_416849	chr5_78359528_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-140-3p	78359526	78359532	7mer-m8	78359525	78359548	160	-26.48
CAediting_416852	chr5_78359557_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-3182	78359557	78359563	7mer-m8	78359556	78359573	150	-15.42
CAediting_416856	chr5_78359567_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-630	78359561	78359568	8mer-1a	78359561	78359581	158	-15.14
CAediting_416857	chr5_78359568_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-325	78359567	78359574	8mer-1a	78359567	78359589	141	-9.72
CAediting_416858	chr5_78359569_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-222-5p	78359567	78359574	8mer-1a	78359567	78359588	140	-9.13
CAediting_416858	chr5_78359569_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-30a-3p	78359565	78359572	8mer-1a	78359565	78359587	149	-13.61
CAediting_416858	chr5_78359569_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-30d-3p	78359565	78359572	8mer-1a	78359565	78359587	149	-12.11
CAediting_416858	chr5_78359569_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-30e-3p	78359565	78359572	8mer-1a	78359565	78359587	149	-13.71
CAediting_416858	chr5_78359569_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-936	78359568	78359575	8mer-1a	78359568	78359591	159	-22.48
CAediting_416859	chr5_78359572_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-374b-3p	78359567	78359574	8mer-1a	78359567	78359593	143	-14.3
CAediting_416866	chr5_78359608_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-3663-5p	78359603	78359609	7mer-m8	78359602	78359624	141	-23.84
CAediting_416866	chr5_78359608_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6843-3p	78359604	78359610	7mer-m8	78359603	78359623	146	-15.77
CAediting_416866	chr5_78359608_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6848-3p	78359604	78359610	7mer-m8	78359603	78359621	140	-11.86
CAediting_416870	chr5_78359662_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-513a-5p	78359661	78359667	7mer-m8	78359660	78359677	140	-16.34
CAediting_416870	chr5_78359662_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-638	78359656	78359662	7mer-1a	78359656	78359680	155	-36.23
CAediting_416832	chr5_78359417_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-2114-3p	78359414	78359420	7mer-m8	78359413	78359433	140	-12.04
CAediting_416832	chr5_78359417_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6823-3p	78359414	78359420	7mer-m8	78359413	78359433	159	-21.45
CAediting_416834	chr5_78359423_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-339-5p	78359422	78359428	7mer-m8	78359421	78359443	163	-27.98
CAediting_416834	chr5_78359423_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4421	78359423	78359429	7mer-m8	78359422	78359444	146	-21.68
CAediting_416835	chr5_78359425_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-340-3p	78359423	78359430	8mer-1a	78359423	78359444	140	-16.4
CAediting_416835	chr5_78359425_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6827-3p	78359423	78359430	8mer-1a	78359423	78359443	147	-17.53
CAediting_416836	chr5_78359429_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-361-3p	78359427	78359434	8mer-1a	78359427	78359449	153	-24.26
CAediting_416838	chr5_78359457_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4281	78359453	78359459	7mer-m8	78359452	78359469	145	-19.49
CAediting_416838	chr5_78359457_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4449	78359454	78359460	7mer-m8	78359453	78359474	150	-24.69
CAediting_416838	chr5_78359457_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4746-5p	78359452	78359458	7mer-m8	78359451	78359471	148	-30.5
CAediting_416840	chr5_78359479_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6840-5p	78359478	78359484	7mer-m8	78359477	78359507	145	-29.82
CAediting_416841	chr5_78359495_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4431	78359492	78359498	7mer-m8	78359491	78359512	140	-17.28
CAediting_416844	chr5_78359505_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-18a-3p	78359500	78359506	7mer-m8	78359499	78359519	153	-22.27
CAediting_416844	chr5_78359505_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-3157-3p	78359501	78359507	7mer-m8	78359500	78359519	157	-26.78
CAediting_416844	chr5_78359505_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-874-3p	78359501	78359506	6mer	78359500	78359522	148	-32.04
CAediting_416846	chr5_78359511_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-361-3p	78359509	78359515	7mer-m8	78359508	78359529	151	-24.01
CAediting_416846	chr5_78359511_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-3943	78359506	78359513	8mer-1a	78359506	78359526	158	-27.1
CAediting_416850	chr5_78359547_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4707-5p	78359547	78359553	7mer-m8	78359546	78359568	140	-22.73
CAediting_416850	chr5_78359547_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6840-5p	78359546	78359552	7mer-m8	78359545	78359567	151	-22.85
CAediting_416860	chr5_78359584_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-412-3p	78359584	78359590	7mer-m8	78359583	78359605	149	-17.3
CAediting_416860	chr5_78359584_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6754-3p	78359584	78359590	7mer-m8	78359583	78359603	142	-15.06
CAediting_416860	chr5_78359584_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6846-5p	78359579	78359585	7mer-m8	78359578	78359599	143	-19.82
CAediting_416860	chr5_78359584_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6848-5p	78359579	78359585	7mer-m8	78359578	78359604	148	-30.06
CAediting_416861	chr5_78359586_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-23a-5p	78359581	78359587	7mer-m8	78359580	78359601	146	-20.31
CAediting_416861	chr5_78359586_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-23b-5p	78359581	78359587	7mer-m8	78359580	78359600	152	-18.89
CAediting_416863	chr5_78359594_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-193a-3p	78359592	78359599	8mer-1a	78359592	78359613	140	-12.1
CAediting_416863	chr5_78359594_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-193b-3p	78359592	78359599	8mer-1a	78359592	78359613	140	-14.77
CAediting_416863	chr5_78359594_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-3190-5p	78359594	78359600	7mer-m8	78359593	78359612	147	-17.77
CAediting_416865	chr5_78359607_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-5580-5p	78359602	78359608	7mer-m8	78359601	78359624	150	-15.71
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-302a-3p	78359650	78359656	7mer-m8	78359649	78359670	143	-14.98
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-302b-3p	78359650	78359656	7mer-m8	78359649	78359671	141	-9.83
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-302c-3p	78359650	78359656	7mer-m8	78359649	78359669	145	-11.96
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-302d-3p	78359650	78359656	7mer-m8	78359649	78359676	144	-13.11
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-302e	78359650	78359656	7mer-m8	78359649	78359665	141	-8.62
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-372-3p	78359650	78359656	7mer-m8	78359649	78359669	153	-17.34
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-373-3p	78359650	78359656	7mer-m8	78359649	78359672	164	-21.28
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-512-3p	78359651	78359657	7mer-m8	78359650	78359671	149	-15.51
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-520a-3p	78359650	78359656	7mer-m8	78359649	78359670	140	-11.03
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-520b-3p	78359650	78359656	7mer-m8	78359649	78359668	141	-16.52
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-520c-3p	78359650	78359656	7mer-m8	78359649	78359669	146	-16.52
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-520d-3p	78359650	78359656	7mer-m8	78359649	78359670	140	-15.12
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-520e-3p	78359650	78359656	7mer-m8	78359649	78359669	140	-13.32
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6506-5p	78359655	78359661	7mer-m8	78359654	78359676	144	-13.78
CAediting_416868	chr5_78359645_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-10392-3p	78359639	78359646	8mer-1a	78359639	78359662	142	-21.88
CAediting_416868	chr5_78359645_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-361-3p	78359644	78359649	6mer	78359643	78359663	141	-22.77

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_416870	chr5_78359662_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-10399-5p	78359660	78359666	7mer-m8	78359659	78359679	140	-9.03
CAediting_416868	chr5_78359645_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-150-5p	78359644	78359650	7mer-m8	78359643	78359664	140	-15.81
CAediting_416866	chr5_78359608_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-29b-2-5p	78359604	78359610	7mer-m8	78359603	78359625	155	-20.91
CAediting_416864	chr5_78359604_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-29b-2-5p	78359604	78359610	7mer-m8	78359603	78359625	155	-20.91
CAediting_416865	chr5_78359607_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-29b-2-5p	78359604	78359610	7mer-m8	78359603	78359625	155	-20.91
CAediting_416838	chr5_78359457_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4638-5p	78359455	78359462	8mer-1a	78359455	78359475	150	-23.11
CAediting_416836	chr5_78359429_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4713-5p	78359427	78359433	7mer-m8	78359426	78359447	140	-14.63
CAediting_416848	chr5_78359522_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4731-5p	78359520	78359525	6mer	78359519	78359539	142	-20.8
CAediting_416851	chr5_78359554_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4735-5p	78359553	78359559	7mer-m8	78359552	78359573	140	-4.44
CAediting_416852	chr5_78359557_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4735-5p	78359553	78359559	7mer-m8	78359552	78359573	140	-4.44
CAediting_416853	chr5_78359561_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4742-3p	78359559	78359566	8mer-1a	78359559	78359581	142	-9.18
CAediting_416854	chr5_78359565_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4742-3p	78359559	78359566	8mer-1a	78359559	78359581	142	-9.18
CAediting_416851	chr5_78359554_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4775	78359554	78359559	6mer	78359553	78359575	141	-6.91
CAediting_416852	chr5_78359557_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4775	78359554	78359559	6mer	78359553	78359575	141	-6.91
CAediting_416870	chr5_78359662_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6504-3p	78359660	78359666	7mer-m8	78359659	78359680	148	-14.35
CAediting_416869	chr5_78359655_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6513-5p	78359655	78359661	7mer-m8	78359654	78359676	149	-14.23
CAediting_416868	chr5_78359645_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6778-3p	78359642	78359648	7mer-m8	78359641	78359661	143	-13.97
CAediting_416870	chr5_78359662_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-7151-3p	78359661	78359668	8mer-1a	78359661	78359680	143	-14.14
CAediting_416849	chr5_78359528_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-7151-3p	78359528	78359534	7mer-m8	78359527	78359547	140	-17.81

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_396018	chr5_1062918_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-4635	78359404	78359410	7mer-1a	78359404	78359424	140	-22.32
CAediting_604450	chr7_133034877_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-3654	78360294	78360300	7mer-m8	78360293	78360312	153	-24.88
CAediting_117844	chr1_162342605_+	ENSG00000245556.2	ENST00000513755.1	hsa-miR-556-3p	78342411	78342417	7mer-m8	78342410	78342432	154	-13.24
CAediting_604450	chr7_133034877_-	ENSG00000245556.2	ENST00000513755.1	hsa-miR-3654	78360294	78360300	7mer-m8	78360293	78360312	153	-24.88
CAediting_468389	chr6_31355314_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-6891-5p	78359320	78359325	6mer	78359319	78359337	149	-26.25
CAediting_1524209	chrX_134546392_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-503-5p	78359948	78359954	7mer-m8	78359947	78359971	156	-24.98

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1306324	chr19_13836464_-	ENSG00000245556.2	ENST00000421004.3	hsa-miR-27a-3p	78359162	78359169	8mer-1a	78359162	78359182	150	-20.03

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SCAMP1-AS1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000421004.3	lincRNA

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_416832	ENST00000421004.3	chr5_78359417_-	-527.70	-525.10	-556.00
CAediting_416833	ENST00000421004.3	chr5_78359419_-	-525.10	-525.10	-556.00
CAediting_416834	ENST00000421004.3	chr5_78359423_-	-524.20	-525.10	-556.00
CAediting_416835	ENST00000421004.3	chr5_78359425_-	-524.40	-525.10	-556.00
CAediting_416836	ENST00000421004.3	chr5_78359429_-	-524.20	-525.10	-556.00
CAediting_416837	ENST00000421004.3	chr5_78359455_-	-525.10	-525.10	-556.00
CAediting_416838	ENST00000421004.3	chr5_78359457_-	-525.10	-525.10	-556.00
CAediting_416839	ENST00000421004.3	chr5_78359466_-	-524.40	-525.10	-556.00
CAediting_416840	ENST00000421004.3	chr5_78359479_-	-525.10	-525.10	-556.00
CAediting_416841	ENST00000421004.3	chr5_78359495_-	-525.10	-525.10	-556.00
CAediting_416842	ENST00000421004.3	chr5_78359496_-	-526.00	-525.10	-556.00
CAediting_416843	ENST00000421004.3	chr5_78359501_-	-526.40	-525.10	-556.00
CAediting_416844	ENST00000421004.3	chr5_78359505_-	-524.80	-525.10	-556.00
CAediting_416845	ENST00000421004.3	chr5_78359506_-	-525.30	-525.10	-556.00
CAediting_416846	ENST00000421004.3	chr5_78359511_-	-524.70	-525.10	-556.00
CAediting_416847	ENST00000421004.3	chr5_78359518_-	-524.80	-525.10	-556.00
CAediting_416848	ENST00000421004.3	chr5_78359522_-	-531.30	-525.10	-556.00
CAediting_416849	ENST00000421004.3	chr5_78359528_-	-523.80	-525.10	-556.00
CAediting_416850	ENST00000421004.3	chr5_78359547_-	-524.20	-525.10	-556.00
CAediting_416851	ENST00000421004.3	chr5_78359554_-	-525.30	-525.10	-556.00
CAediting_416852	ENST00000421004.3	chr5_78359557_-	-525.50	-525.10	-556.00
CAediting_416853	ENST00000421004.3	chr5_78359561_-	-524.40	-525.10	-556.00
CAediting_416854	ENST00000421004.3	chr5_78359565_-	-525.10	-525.10	-556.00
CAediting_416855	ENST00000421004.3	chr5_78359566_-	-525.10	-525.10	-556.00
CAediting_416856	ENST00000421004.3	chr5_78359567_-	-525.10	-525.10	-556.00
CAediting_416857	ENST00000421004.3	chr5_78359568_-	-526.80	-525.10	-556.00
CAediting_416858	ENST00000421004.3	chr5_78359569_-	-524.80	-525.10	-556.00
CAediting_416859	ENST00000421004.3	chr5_78359572_-	-527.10	-525.10	-556.00
CAediting_416860	ENST00000421004.3	chr5_78359584_-	-530.60	-525.10	-556.00
CAediting_416861	ENST00000421004.3	chr5_78359586_-	-526.40	-525.10	-556.00
CAediting_416862	ENST00000421004.3	chr5_78359592_-	-525.10	-525.10	-556.00
CAediting_416863	ENST00000421004.3	chr5_78359594_-	-528.10	-525.10	-556.00
CAediting_416864	ENST00000421004.3	chr5_78359604_-	-527.90	-525.10	-556.00
CAediting_416865	ENST00000421004.3	chr5_78359607_-	-528.00	-525.10	-556.00
CAediting_416866	ENST00000421004.3	chr5_78359608_-	-527.80	-525.10	-556.00
CAediting_416867	ENST00000421004.3	chr5_78359615_-	-528.10	-525.10	-556.00
CAediting_416868	ENST00000421004.3	chr5_78359645_-	-524.50	-525.10	-556.00
CAediting_416869	ENST00000421004.3	chr5_78359655_-	-524.80	-525.10	-556.00
CAediting_416870	ENST00000421004.3	chr5_78359662_-	-528.00	-525.10	-556.00

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Relation with ADAR for SCAMP1-AS1

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
GBM	CAediting_416845	chr5_78359506_-	.	.	0.0151599429722216	0.331980313447207	.	.
STAD	CAediting_416845	chr5_78359506_-	.	.	.	.	0.0307437432626876	0.193344950328043
BLCA	CAediting_416847	chr5_78359518_-	.	.	0.000228998104635158	0.396200770096256	.	.
THCA	CAediting_416847	chr5_78359518_-	0.0119019327248947	0.174942120816007	.	.	.	.
PRAD	CAediting_416849	chr5_78359528_-	.	.	0.0237191119876504	0.266364491184426	.	.
LGG	CAediting_416851	chr5_78359554_-	.	.	0.00300077750753952	0.243159510698819	.	.
BRCA	CAediting_416851	chr5_78359554_-	.	.	1.00954853106415e-05	0.275740908551236	0.0318697597787466	0.136051370025061
LUSC	CAediting_416851	chr5_78359554_-	.	.	0.00634098136208026	0.34038017536471	.	.
PRAD	CAediting_416851	chr5_78359554_-	.	.	1.50766370464698e-05	0.26289101759254	.	.
KIRP	CAediting_416851	chr5_78359554_-	.	.	1.94782432026655e-05	0.42721630996463	.	.
SKCM	CAediting_416851	chr5_78359554_-	.	.	7.76198885929678e-06	0.374256733443455	.	.
SARC	CAediting_416851	chr5_78359554_-	.	.	1.66565691489325e-05	0.461207874377322	.	.
OV	CAediting_416857	chr5_78359568_-	.	.	.	.	0.00438961389607034	0.375127346211193
LUAD	CAediting_416858	chr5_78359569_-	0.0496394263675033	0.208736292548113	.	.	.	.
LUSC	CAediting_416858	chr5_78359569_-	.	.	0.0243214656483626	0.237298475674918	.	.
GBM	CAediting_416858	chr5_78359569_-	0.00885549694639755	0.256713538072993	.	.	.	.
THCA	CAediting_416858	chr5_78359569_-	0.0343430857274686	0.151628948922639	.	.	.	.

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Relation with cancer stages for SCAMP1-AS1

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_416858	chr5_78359569_-	0.0056105290295164	0.16282463211416
KIRC	pathologic_stage	CAediting_416847	chr5_78359518_-	0.00915428699691167	0.168613746316851
KIRP	pathologic_stage	CAediting_416858	chr5_78359569_-	0.0107760933051502	0.357638831794941
SKCM	pathologic_stage	CAediting_416847	chr5_78359518_-	0.0159820801650538	0.220464758969684

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Relation with survival for SCAMP1-AS1

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LUSC	CAediting_416847	chr5_78359518_-	0.0138643410295541	0.0013993	2087.35

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RelatedDrugs for SCAMP1-AS1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SCAMP1-AS1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene