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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: TRAF1 (CAeditome ID:7185) |
Gene summary for TRAF1 |
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Gene information | Gene symbol | TRAF1 | Gene ID | 7185 |
Gene name | TNF receptor associated factor 1 | |
Synonyms | EBI6|MGC:10353 | |
Cytomap | 9q33.2 | |
Type of gene | protein-coding | |
Description | TNF receptor-associated factor 1Epstein-Bar virus-induced protein 6 | |
Modification date | 20210518 | |
UniProtAcc | Q13077 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
TRAF1 | GO:0051092 | TNF receptor-associated factor 1 | 10692572 |
TRAF1 | GO:2001236 | TNF receptor-associated factor 1 | 10692572 |
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RNA A-to-I events for TRAF1 |
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CAediting_705128(120902826, -), CAediting_705129(120910663, -), CAediting_705130(120910669, -), CAediting_705131(120910672, -), CAediting_705132(120915726, -), CAediting_705133(120915782, -), CAediting_705134(120918188, -), CAediting_705135(120922950, -), CAediting_705136(120923112, -), CAediting_705137(120927370, -), CAediting_705138(120927399, -), CAediting_705139(120927400, -), CAediting_705140(120927404, -), CAediting_705141(120927429, -), CAediting_705142(120927431, -), CAediting_705143(120927453, -), CAediting_705144(120927454, -), CAediting_705145(120927455, -), CAediting_705146(120927476, -), CAediting_705147(120928141, -), CAediting_705148(120928157, -), CAediting_705149(120928173, -), CAediting_705150(120928181, -), CAediting_705151(120928182, -), CAediting_705152(120928193, -), CAediting_705153(120928200, -), |
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RNA editing positional annotations for TRAF1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_705128 | chr9_120902826_- | UTR3 |
CAediting_705129 | chr9_120910663_- | intronic |
CAediting_705130 | chr9_120910669_- | intronic |
CAediting_705131 | chr9_120910672_- | intronic |
CAediting_705132 | chr9_120915726_- | intronic |
CAediting_705133 | chr9_120915782_- | intronic |
CAediting_705134 | chr9_120918188_- | intronic |
CAediting_705135 | chr9_120922950_- | intronic |
CAediting_705136 | chr9_120923112_- | intronic |
CAediting_705137 | chr9_120927370_- | UTR5 |
CAediting_705138 | chr9_120927399_- | UTR5 |
CAediting_705139 | chr9_120927400_- | UTR5 |
CAediting_705140 | chr9_120927404_- | UTR5 |
CAediting_705141 | chr9_120927429_- | UTR5 |
CAediting_705142 | chr9_120927431_- | UTR5 |
CAediting_705143 | chr9_120927453_- | UTR5 |
CAediting_705144 | chr9_120927454_- | UTR5 |
CAediting_705145 | chr9_120927455_- | UTR5 |
CAediting_705146 | chr9_120927476_- | UTR5 |
CAediting_705147 | chr9_120928141_- | UTR5 |
CAediting_705148 | chr9_120928157_- | UTR5 |
CAediting_705149 | chr9_120928173_- | UTR5 |
CAediting_705150 | chr9_120928181_- | UTR5 |
CAediting_705151 | chr9_120928182_- | UTR5 |
CAediting_705152 | chr9_120928193_- | UTR5 |
CAediting_705153 | chr9_120928200_- | UTR5 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_705128 | chr9_120902826_- | LINE | L2 | L2b |
CAediting_705129 | chr9_120910663_- | SINE | Alu | AluJr |
CAediting_705130 | chr9_120910669_- | SINE | Alu | AluJr |
CAediting_705131 | chr9_120910672_- | SINE | Alu | AluJr |
CAediting_705132 | chr9_120915726_- | SINE | Alu | AluJr |
CAediting_705133 | chr9_120915782_- | SINE | Alu | AluJr |
CAediting_705134 | chr9_120918188_- | LTR | ERVL-MaLR | MLT1B |
CAediting_705135 | chr9_120922950_- | SINE | Alu | AluJb |
CAediting_705136 | chr9_120923112_- | SINE | Alu | AluJb |
CAediting_705137 | chr9_120927370_- | SINE | MIR | MIRb |
CAediting_705138 | chr9_120927399_- | SINE | MIR | MIRb |
CAediting_705139 | chr9_120927400_- | SINE | MIR | MIRb |
CAediting_705140 | chr9_120927404_- | SINE | MIR | MIRb |
CAediting_705141 | chr9_120927429_- | SINE | MIR | MIRb |
CAediting_705142 | chr9_120927431_- | SINE | MIR | MIRb |
CAediting_705143 | chr9_120927453_- | SINE | MIR | MIRb |
CAediting_705144 | chr9_120927454_- | SINE | MIR | MIRb |
CAediting_705145 | chr9_120927455_- | SINE | MIR | MIRb |
CAediting_705146 | chr9_120927476_- | SINE | MIR | MIRb |
CAediting_705147 | chr9_120928141_- | SINE | MIR | MIR |
CAediting_705148 | chr9_120928157_- | SINE | MIR | MIR |
CAediting_705149 | chr9_120928173_- | SINE | MIR | MIR |
CAediting_705150 | chr9_120928181_- | SINE | MIR | MIR |
CAediting_705151 | chr9_120928182_- | SINE | MIR | MIR |
CAediting_705152 | chr9_120928193_- | SINE | MIR | MIR |
CAediting_705153 | chr9_120928200_- | SINE | MIR | MIR |
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RNA A-to-I editing events in the alternative splicing sites for TRAF1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRAF1 |
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Protein coding region RNA A-to-I editings for TRAF1 |
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The effects of the RNA editing to the miRNA binding sites for TRAF1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_705128 | chr9_120902826_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-1200 | 120902823 | 120902830 | 8mer-1a | 120902823 | 120902845 | 150.00 | -17.57 |
CAediting_705128 | chr9_120902826_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-1200 | 120902823 | 120902830 | 8mer-1a | 120902823 | 120902845 | 150.00 | -17.57 |
CAediting_705128 | chr9_120902826_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-1200 | 120902823 | 120902830 | 8mer-1a | 120902823 | 120902845 | 150.00 | -17.57 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_705128 | chr9_120902826_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-526b-5p | 120902823 | 120902830 | 8mer-1a | 120902823 | 120902849 | 147 | -16.16 |
CAediting_705128 | chr9_120902826_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-8081 | 120902826 | 120902832 | 7mer-m8 | 120902825 | 120902851 | 149 | -19.4 |
CAediting_705128 | chr9_120902826_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-526b-5p | 120902823 | 120902830 | 8mer-1a | 120902823 | 120902849 | 147 | -16.16 |
CAediting_705128 | chr9_120902826_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-8081 | 120902826 | 120902832 | 7mer-m8 | 120902825 | 120902851 | 149 | -19.4 |
CAediting_705128 | chr9_120902826_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-526b-5p | 120902823 | 120902830 | 8mer-1a | 120902823 | 120902849 | 147 | -16.16 |
CAediting_705128 | chr9_120902826_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-8081 | 120902826 | 120902832 | 7mer-m8 | 120902825 | 120902851 | 149 | -19.4 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000056558.9 | ENST00000546084 | hsa-miR-605-3p | 120903324 | 120903330 | 7mer-m8 | 120903323 | 120903345 | 142 | -19.15 |
CAediting_748296 | chr10_51299626_+ | ENSG00000056558.9 | ENST00000373887 | hsa-miR-605-3p | 120903324 | 120903330 | 7mer-m8 | 120903323 | 120903345 | 142 | -19.15 |
CAediting_748296 | chr10_51299626_+ | ENSG00000056558.9 | ENST00000540010 | hsa-miR-605-3p | 120903324 | 120903330 | 7mer-m8 | 120903323 | 120903345 | 142 | -19.15 |
CAediting_1054808 | chr15_66496985_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-4512 | 120904096 | 120904103 | 8mer-1a | 120904096 | 120904117 | 147 | -18.32 |
CAediting_1368054 | chr19_46709310_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-320e | 120903316 | 120903322 | 7mer-m8 | 120903315 | 120903332 | 144 | -19.86 |
CAediting_1368054 | chr19_46709310_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-320e | 120904344 | 120904350 | 7mer-m8 | 120904343 | 120904360 | 151 | -23 |
CAediting_117844 | chr1_162342605_+ | ENSG00000056558.9 | ENST00000546084 | hsa-miR-556-3p | 120903707 | 120903713 | 7mer-m8 | 120903706 | 120903726 | 150 | -15.8 |
CAediting_77128 | chr1_85133844_+ | ENSG00000056558.9 | ENST00000546084 | hsa-miR-4423-3p | 120902526 | 120902532 | 7mer-m8 | 120902525 | 120902545 | 140 | -13.47 |
CAediting_228905 | chr2_188297554_+ | ENSG00000056558.9 | ENST00000546084 | hsa-miR-561-3p | 120902818 | 120902824 | 7mer-m8 | 120902817 | 120902839 | 142 | -12.56 |
CAediting_396018 | chr5_1062918_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-4635 | 120904139 | 120904146 | 8mer-1a | 120904139 | 120904159 | 145 | -15.5 |
CAediting_1054808 | chr15_66496985_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-4512 | 120904096 | 120904103 | 8mer-1a | 120904096 | 120904117 | 147 | -18.32 |
CAediting_1368054 | chr19_46709310_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-320e | 120903316 | 120903322 | 7mer-m8 | 120903315 | 120903332 | 144 | -19.86 |
CAediting_1368054 | chr19_46709310_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-320e | 120904344 | 120904350 | 7mer-m8 | 120904343 | 120904360 | 151 | -23 |
CAediting_117844 | chr1_162342605_+ | ENSG00000056558.9 | ENST00000373887 | hsa-miR-556-3p | 120903707 | 120903713 | 7mer-m8 | 120903706 | 120903726 | 150 | -15.8 |
CAediting_77128 | chr1_85133844_+ | ENSG00000056558.9 | ENST00000373887 | hsa-miR-4423-3p | 120902526 | 120902532 | 7mer-m8 | 120902525 | 120902545 | 140 | -13.47 |
CAediting_228905 | chr2_188297554_+ | ENSG00000056558.9 | ENST00000373887 | hsa-miR-561-3p | 120902818 | 120902824 | 7mer-m8 | 120902817 | 120902839 | 142 | -12.56 |
CAediting_396018 | chr5_1062918_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-4635 | 120904139 | 120904146 | 8mer-1a | 120904139 | 120904159 | 145 | -15.5 |
CAediting_1054808 | chr15_66496985_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-4512 | 120904096 | 120904103 | 8mer-1a | 120904096 | 120904117 | 147 | -18.32 |
CAediting_1368054 | chr19_46709310_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-320e | 120903316 | 120903322 | 7mer-m8 | 120903315 | 120903332 | 144 | -19.86 |
CAediting_1368054 | chr19_46709310_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-320e | 120904344 | 120904350 | 7mer-m8 | 120904343 | 120904360 | 151 | -23 |
CAediting_117844 | chr1_162342605_+ | ENSG00000056558.9 | ENST00000540010 | hsa-miR-556-3p | 120903707 | 120903713 | 7mer-m8 | 120903706 | 120903726 | 150 | -15.8 |
CAediting_77128 | chr1_85133844_+ | ENSG00000056558.9 | ENST00000540010 | hsa-miR-4423-3p | 120902526 | 120902532 | 7mer-m8 | 120902525 | 120902545 | 140 | -13.47 |
CAediting_228905 | chr2_188297554_+ | ENSG00000056558.9 | ENST00000540010 | hsa-miR-561-3p | 120902818 | 120902824 | 7mer-m8 | 120902817 | 120902839 | 142 | -12.56 |
CAediting_396018 | chr5_1062918_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-4635 | 120904139 | 120904146 | 8mer-1a | 120904139 | 120904159 | 145 | -15.5 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_846604 | chr11_93733708_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-1304-3p | 120904753 | 120904759 | 7mer-m8 | 120904752 | 120904771 | 152 | -19.77 |
CAediting_1306324 | chr19_13836464_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-27a-3p | 120904961 | 120904967 | 7mer-m8 | 120904960 | 120904984 | 152 | -23.87 |
CAediting_1306323 | chr19_13836462_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-27a-3p | 120904961 | 120904967 | 7mer-m8 | 120904960 | 120904984 | 152 | -23.87 |
CAediting_1368054 | chr19_46709310_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-320e | 120903783 | 120903789 | 7mer-m8 | 120903782 | 120903799 | 154 | -15.66 |
CAediting_1054808 | chr15_66496985_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-4512 | 120903087 | 120903093 | 7mer-m8 | 120903086 | 120903107 | 152 | -25.55 |
CAediting_1399425 | chr20_1392958_- | ENSG00000056558.9 | ENST00000546084 | hsa-miR-6869-5p | 120903047 | 120903053 | 7mer-m8 | 120903046 | 120903068 | 149 | -21.5 |
CAediting_846604 | chr11_93733708_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-1304-3p | 120904753 | 120904759 | 7mer-m8 | 120904752 | 120904771 | 152 | -19.77 |
CAediting_1306324 | chr19_13836464_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-27a-3p | 120904961 | 120904967 | 7mer-m8 | 120904960 | 120904984 | 152 | -23.87 |
CAediting_1306323 | chr19_13836462_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-27a-3p | 120904961 | 120904967 | 7mer-m8 | 120904960 | 120904984 | 152 | -23.87 |
CAediting_1368054 | chr19_46709310_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-320e | 120903783 | 120903789 | 7mer-m8 | 120903782 | 120903799 | 154 | -15.66 |
CAediting_1054808 | chr15_66496985_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-4512 | 120903087 | 120903093 | 7mer-m8 | 120903086 | 120903107 | 152 | -25.55 |
CAediting_1399425 | chr20_1392958_- | ENSG00000056558.9 | ENST00000373887 | hsa-miR-6869-5p | 120903047 | 120903053 | 7mer-m8 | 120903046 | 120903068 | 149 | -21.5 |
CAediting_846604 | chr11_93733708_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-1304-3p | 120904753 | 120904759 | 7mer-m8 | 120904752 | 120904771 | 152 | -19.77 |
CAediting_1306324 | chr19_13836464_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-27a-3p | 120904961 | 120904967 | 7mer-m8 | 120904960 | 120904984 | 152 | -23.87 |
CAediting_1306323 | chr19_13836462_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-27a-3p | 120904961 | 120904967 | 7mer-m8 | 120904960 | 120904984 | 152 | -23.87 |
CAediting_1368054 | chr19_46709310_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-320e | 120903783 | 120903789 | 7mer-m8 | 120903782 | 120903799 | 154 | -15.66 |
CAediting_1054808 | chr15_66496985_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-4512 | 120903087 | 120903093 | 7mer-m8 | 120903086 | 120903107 | 152 | -25.55 |
CAediting_1399425 | chr20_1392958_- | ENSG00000056558.9 | ENST00000540010 | hsa-miR-6869-5p | 120903047 | 120903053 | 7mer-m8 | 120903046 | 120903068 | 149 | -21.5 |
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The effects of the RNA editing to the stability of the RNA structures for TRAF1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TRAF1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BRCA | CAediting_705140 | chr9_120927404_- | 0.013995310842898 | 0.173964859990785 | . | . | . | . |
KIRP | CAediting_705140 | chr9_120927404_- | 0.0207952496954545 | 0.277865301702532 | . | . | 0.0475608488981535 | 0.239409792672329 |
SKCM | CAediting_705140 | chr9_120927404_- | . | . | 1.03589534347529e-05 | 0.433290520481319 | . | . |
BRCA | CAediting_705142 | chr9_120927431_- | 0.00287170682566362 | 0.351213482292098 | . | . | . | . |
KIRC | CAediting_705149 | chr9_120928173_- | . | . | 0.011700848254214 | 0.232365658101179 | . | . |
KIRP | CAediting_705149 | chr9_120928173_- | . | . | 1.60207058199264e-10 | 0.670415858727415 | . | . |
SKCM | CAediting_705149 | chr9_120928173_- | . | . | 8.45693509668388e-06 | 0.517872047450933 | . | . |
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Relation with cancer stages for TRAF1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_705140 | chr9_120927404_- | 0.0342016474623394 | 0.15213802069638 |
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Relation with survival for TRAF1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for TRAF1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TRAF1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
TRAF1 | C0003873 | Rheumatoid Arthritis | 2 | CTD_human |
TRAF1 | C0000786 | Spontaneous abortion | 1 | CTD_human |
TRAF1 | C0000822 | Abortion, Tubal | 1 | CTD_human |
TRAF1 | C0013274 | Patent ductus arteriosus | 1 | CTD_human |
TRAF1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
TRAF1 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
TRAF1 | C2936170 | Patent Ductus Arteriosus Familial | 1 | CTD_human |
TRAF1 | C3830362 | Early Pregnancy Loss | 1 | CTD_human |
TRAF1 | C4552766 | Miscarriage | 1 | CTD_human |