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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: HSP90B1 (CAeditome ID:7184)

Gene summary for HSP90B1

check button Gene summary
Gene informationGene symbol

HSP90B1

Gene ID

7184

Gene nameheat shock protein 90 beta family member 1
SynonymsECGP|GP96|GRP94|HEL-S-125m|HEL35|TRA1
Cytomap

12q23.3

Type of geneprotein-coding
Descriptionendoplasmin94 kDa glucose-regulated proteinendothelial cell (HBMEC) glycoproteinepididymis luminal protein 35epididymis secretory sperm binding protein Li 125mheat shock protein 90 kDa beta member 1heat shock protein 90kDa beta (Grp94), member 1hea
Modification date20210518
UniProtAcc

P14625

Context- 27599983(HSP90B1 overexpression predicts poor prognosis in NSCLC patients)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
HSP90B1

GO:0031247

Endoplasmin

19000834

HSP90B1

GO:0043666

Endoplasmin

19000834

HSP90B1

GO:0071318

Endoplasmin

19000834

HSP90B1

GO:0003723

Endoplasmin

11958450

HSP90B1

GO:0019903

Endoplasmin

19000834

HSP90B1

GO:0050750

Endoplasmin

15082773

HSP90B1

GO:0001666

Endoplasmin

15620698

HSP90B1

GO:0005783

Endoplasmin

0000052

HSP90B1

GO:0005783

Endoplasmin

17344063

HSP90B1

GO:0005783

Endoplasmin

30188326

HSP90B1

GO:0005788

Endoplasmin

10497210

HSP90B1

GO:0005789

Endoplasmin

10497210

HSP90B1

GO:0005829

Endoplasmin

9596688

HSP90B1

GO:0030496

Endoplasmin

15166316

HSP90B1

GO:0048471

Endoplasmin

10497210

HSP90B1

GO:0032991

Endoplasmin

23349634


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RNA A-to-I events for HSP90B1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000166598.11
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_919366(103932422, +), CAediting_919367(103934720, +), CAediting_919368(103934763, +), CAediting_919369(103934765, +), CAediting_919370(103934776, +), CAediting_919371(103934782, +), CAediting_919372(103934802, +), CAediting_919373(103934827, +), CAediting_919374(103934828, +), CAediting_919375(103934863, +), CAediting_919376(103934884, +), CAediting_919377(103934961, +), CAediting_919378(103934963, +), CAediting_919379(103934975, +), CAediting_919380(103936386, +), CAediting_919381(103936387, +), CAediting_919382(103936392, +), CAediting_919383(103936395, +), CAediting_919384(103936409, +), CAediting_919385(103936422, +), CAediting_919386(103936428, +), CAediting_919387(103936432, +), CAediting_919388(103936458, +), CAediting_919389(103936460, +), CAediting_919390(103936477, +), CAediting_919391(103936480, +), CAediting_919392(103936486, +), CAediting_919393(103936492, +), CAediting_919394(103936493, +), CAediting_919395(103936497, +), CAediting_919396(103936500, +), CAediting_919397(103936508, +), CAediting_919398(103936510, +), CAediting_919399(103936526, +), CAediting_919400(103936532, +), CAediting_919401(103936536, +), CAediting_919402(103936540, +), CAediting_919403(103936567, +), CAediting_919404(103936581, +), CAediting_919405(103937218, +), CAediting_919406(103937938, +), CAediting_919407(103938037, +), CAediting_919408(103938050, +), CAediting_919409(103938060, +), CAediting_919410(103938112, +), CAediting_919411(103938120, +), CAediting_919412(103944580, +), CAediting_919413(103944656, +), CAediting_919414(103944660, +), CAediting_919415(103944661, +), CAediting_919416(103944739, +), CAediting_919417(103944816, +), CAediting_919418(103945171, +), CAediting_919419(103945219, +), CAediting_919420(103945230, +), CAediting_919421(103945232, +), CAediting_919422(103945266, +), CAediting_919423(103945271, +), CAediting_919424(103945286, +), CAediting_919425(103945322, +), CAediting_919426(103945875, +), CAediting_919427(103945882, +), CAediting_919428(103945902, +), CAediting_919429(103948132, +), CAediting_919430(103948133, +), CAediting_919431(103948136, +), CAediting_919432(103948137, +), CAediting_919433(103948149, +), CAediting_919434(103948189, +), CAediting_919435(103948222, +), CAediting_919436(103948233, +), CAediting_919437(103948293, +), CAediting_919438(103948328, +), CAediting_919439(103948340, +), CAediting_919440(103948342, +), CAediting_919441(103948356, +), CAediting_919442(103948357, +), CAediting_919443(103948364, +), CAediting_919444(103948368, +), CAediting_919445(103948377, +), CAediting_919446(103948386, +), CAediting_919447(103949028, +), CAediting_919448(103949038, +), CAediting_919449(103949039, +), CAediting_919450(103949056, +), CAediting_919451(103949068, +), CAediting_919452(103949091, +), CAediting_919453(103949115, +), CAediting_919454(103949122, +), CAediting_919455(103949194, +), CAediting_919456(103949195, +), CAediting_919457(103949196, +), CAediting_919458(103949209, +), CAediting_919459(103949217, +), CAediting_919460(103949220, +),

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RNA editing positional annotations for HSP90B1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_919366chr12_103932422_+ncRNA_intronic
CAediting_919367chr12_103934720_+ncRNA_intronic
CAediting_919368chr12_103934763_+ncRNA_intronic
CAediting_919369chr12_103934765_+ncRNA_intronic
CAediting_919370chr12_103934776_+ncRNA_intronic
CAediting_919371chr12_103934782_+ncRNA_intronic
CAediting_919372chr12_103934802_+ncRNA_intronic
CAediting_919373chr12_103934827_+ncRNA_intronic
CAediting_919374chr12_103934828_+ncRNA_intronic
CAediting_919375chr12_103934863_+ncRNA_intronic
CAediting_919376chr12_103934884_+ncRNA_intronic
CAediting_919377chr12_103934961_+ncRNA_intronic
CAediting_919378chr12_103934963_+ncRNA_intronic
CAediting_919379chr12_103934975_+ncRNA_intronic
CAediting_919380chr12_103936386_+ncRNA_intronic
CAediting_919381chr12_103936387_+ncRNA_intronic
CAediting_919382chr12_103936392_+ncRNA_intronic
CAediting_919383chr12_103936395_+ncRNA_intronic
CAediting_919384chr12_103936409_+ncRNA_intronic
CAediting_919385chr12_103936422_+ncRNA_intronic
CAediting_919386chr12_103936428_+ncRNA_intronic
CAediting_919387chr12_103936432_+ncRNA_intronic
CAediting_919388chr12_103936458_+ncRNA_intronic
CAediting_919389chr12_103936460_+ncRNA_intronic
CAediting_919390chr12_103936477_+ncRNA_intronic
CAediting_919391chr12_103936480_+ncRNA_intronic
CAediting_919392chr12_103936486_+ncRNA_intronic
CAediting_919393chr12_103936492_+ncRNA_intronic
CAediting_919394chr12_103936493_+ncRNA_intronic
CAediting_919395chr12_103936497_+ncRNA_intronic
CAediting_919396chr12_103936500_+ncRNA_intronic
CAediting_919397chr12_103936508_+ncRNA_intronic
CAediting_919398chr12_103936510_+ncRNA_intronic
CAediting_919399chr12_103936526_+ncRNA_intronic
CAediting_919400chr12_103936532_+ncRNA_intronic
CAediting_919401chr12_103936536_+ncRNA_intronic
CAediting_919402chr12_103936540_+ncRNA_intronic
CAediting_919403chr12_103936567_+ncRNA_intronic
CAediting_919404chr12_103936581_+ncRNA_intronic
CAediting_919405chr12_103937218_+ncRNA_intronic
CAediting_919406chr12_103937938_+ncRNA_intronic
CAediting_919407chr12_103938037_+ncRNA_intronic
CAediting_919408chr12_103938050_+ncRNA_intronic
CAediting_919409chr12_103938060_+ncRNA_intronic
CAediting_919410chr12_103938112_+ncRNA_intronic
CAediting_919411chr12_103938120_+ncRNA_intronic
CAediting_919412chr12_103944580_+ncRNA_intronic
CAediting_919413chr12_103944656_+ncRNA_intronic
CAediting_919414chr12_103944660_+ncRNA_intronic
CAediting_919415chr12_103944661_+ncRNA_intronic
CAediting_919416chr12_103944739_+ncRNA_intronic
CAediting_919417chr12_103944816_+ncRNA_intronic
CAediting_919418chr12_103945171_+ncRNA_intronic
CAediting_919419chr12_103945219_+ncRNA_intronic
CAediting_919420chr12_103945230_+ncRNA_intronic
CAediting_919421chr12_103945232_+ncRNA_intronic
CAediting_919422chr12_103945266_+ncRNA_intronic
CAediting_919423chr12_103945271_+ncRNA_intronic
CAediting_919424chr12_103945286_+ncRNA_intronic
CAediting_919425chr12_103945322_+ncRNA_intronic
CAediting_919426chr12_103945875_+ncRNA_intronic
CAediting_919427chr12_103945882_+ncRNA_intronic
CAediting_919428chr12_103945902_+ncRNA_intronic
CAediting_919429chr12_103948132_+intronic
CAediting_919430chr12_103948133_+intronic
CAediting_919431chr12_103948136_+intronic
CAediting_919432chr12_103948137_+intronic
CAediting_919433chr12_103948149_+intronic
CAediting_919434chr12_103948189_+intronic
CAediting_919435chr12_103948222_+intronic
CAediting_919436chr12_103948233_+intronic
CAediting_919437chr12_103948293_+intronic
CAediting_919438chr12_103948328_+intronic
CAediting_919439chr12_103948340_+intronic
CAediting_919440chr12_103948342_+intronic
CAediting_919441chr12_103948356_+intronic
CAediting_919442chr12_103948357_+intronic
CAediting_919443chr12_103948364_+intronic
CAediting_919444chr12_103948368_+intronic
CAediting_919445chr12_103948377_+intronic
CAediting_919446chr12_103948386_+intronic
CAediting_919447chr12_103949028_+intronic
CAediting_919448chr12_103949038_+intronic
CAediting_919449chr12_103949039_+intronic
CAediting_919450chr12_103949056_+intronic
CAediting_919451chr12_103949068_+intronic
CAediting_919452chr12_103949091_+intronic
CAediting_919453chr12_103949115_+intronic
CAediting_919454chr12_103949122_+intronic
CAediting_919455chr12_103949194_+intronic
CAediting_919456chr12_103949195_+intronic
CAediting_919457chr12_103949196_+intronic
CAediting_919458chr12_103949209_+intronic
CAediting_919459chr12_103949217_+intronic
CAediting_919460chr12_103949220_+intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_919367chr12_103934720_+SINEAluAluSp
CAediting_919368chr12_103934763_+SINEAluAluSp
CAediting_919369chr12_103934765_+SINEAluAluSp
CAediting_919370chr12_103934776_+SINEAluAluSp
CAediting_919371chr12_103934782_+SINEAluAluSp
CAediting_919372chr12_103934802_+SINEAluAluSp
CAediting_919373chr12_103934827_+SINEAluAluSp
CAediting_919374chr12_103934828_+SINEAluAluSp
CAediting_919375chr12_103934863_+SINEAluAluSp
CAediting_919376chr12_103934884_+SINEAluAluSp
CAediting_919377chr12_103934961_+SINEAluAluSp
CAediting_919378chr12_103934963_+SINEAluAluSp
CAediting_919379chr12_103934975_+SINEAluAluSp
CAediting_919380chr12_103936386_+SINEAluAluJb
CAediting_919381chr12_103936387_+SINEAluAluJb
CAediting_919382chr12_103936392_+SINEAluAluJb
CAediting_919383chr12_103936395_+SINEAluAluJb
CAediting_919384chr12_103936409_+SINEAluAluJb
CAediting_919385chr12_103936422_+SINEAluAluJb
CAediting_919386chr12_103936428_+SINEAluAluJb
CAediting_919387chr12_103936432_+SINEAluAluJb
CAediting_919388chr12_103936458_+SINEAluAluJb
CAediting_919389chr12_103936460_+SINEAluAluJb
CAediting_919390chr12_103936477_+SINEAluAluJb
CAediting_919391chr12_103936480_+SINEAluAluJb
CAediting_919392chr12_103936486_+SINEAluAluJb
CAediting_919393chr12_103936492_+SINEAluAluJb
CAediting_919394chr12_103936493_+SINEAluAluJb
CAediting_919395chr12_103936497_+SINEAluAluJb
CAediting_919396chr12_103936500_+SINEAluAluJb
CAediting_919397chr12_103936508_+SINEAluAluJb
CAediting_919398chr12_103936510_+SINEAluAluJb
CAediting_919399chr12_103936526_+SINEAluAluJb
CAediting_919400chr12_103936532_+SINEAluAluJb
CAediting_919401chr12_103936536_+SINEAluAluJb
CAediting_919402chr12_103936540_+SINEAluAluJb
CAediting_919403chr12_103936567_+SINEAluAluJb
CAediting_919404chr12_103936581_+SINEAluAluJb
CAediting_919405chr12_103937218_+DNAhAT-CharlieMER3
CAediting_919406chr12_103937938_+SINEAluAluSx
CAediting_919407chr12_103938037_+SINEAluAluSx
CAediting_919408chr12_103938050_+SINEAluAluSx
CAediting_919409chr12_103938060_+SINEAluAluSx
CAediting_919410chr12_103938112_+SINEAluAluSx
CAediting_919411chr12_103938120_+SINEAluAluSx
CAediting_919412chr12_103944580_+SINEAluAluSx1
CAediting_919413chr12_103944656_+SINEAluAluSx1
CAediting_919414chr12_103944660_+SINEAluAluSx1
CAediting_919415chr12_103944661_+SINEAluAluSx1
CAediting_919416chr12_103944739_+SINEAluAluSx1
CAediting_919417chr12_103944816_+SINEAluAluSx1
CAediting_919418chr12_103945171_+SINEAluAluJo
CAediting_919419chr12_103945219_+SINEAluAluJo
CAediting_919420chr12_103945230_+SINEAluAluJo
CAediting_919421chr12_103945232_+SINEAluAluJo
CAediting_919422chr12_103945266_+SINEAluAluJo
CAediting_919423chr12_103945271_+SINEAluAluJo
CAediting_919424chr12_103945286_+SINEAluAluJo
CAediting_919425chr12_103945322_+SINEAluAluJo
CAediting_919426chr12_103945875_+SINEAluAluJb
CAediting_919427chr12_103945882_+SINEAluAluJb
CAediting_919428chr12_103945902_+SINEAluAluJb
CAediting_919429chr12_103948132_+SINEAluAluSg7
CAediting_919430chr12_103948133_+SINEAluAluSg7
CAediting_919431chr12_103948136_+SINEAluAluSg7
CAediting_919432chr12_103948137_+SINEAluAluSg7
CAediting_919433chr12_103948149_+SINEAluAluSg7
CAediting_919434chr12_103948189_+SINEAluAluSg7
CAediting_919435chr12_103948222_+SINEAluAluSg7
CAediting_919436chr12_103948233_+SINEAluAluSg7
CAediting_919437chr12_103948293_+SINEAluAluSg7
CAediting_919438chr12_103948328_+SINEAluAluJb
CAediting_919439chr12_103948340_+SINEAluAluJb
CAediting_919440chr12_103948342_+SINEAluAluJb
CAediting_919441chr12_103948356_+SINEAluAluJb
CAediting_919442chr12_103948357_+SINEAluAluJb
CAediting_919443chr12_103948364_+SINEAluAluJb
CAediting_919444chr12_103948368_+SINEAluAluJb
CAediting_919445chr12_103948377_+SINEAluAluJb
CAediting_919446chr12_103948386_+SINEAluAluJb
CAediting_919447chr12_103949028_+SINEAluAluSx1
CAediting_919448chr12_103949038_+SINEAluAluSx1
CAediting_919449chr12_103949039_+SINEAluAluSx1
CAediting_919450chr12_103949056_+SINEAluAluSx1
CAediting_919451chr12_103949068_+SINEAluAluSx1
CAediting_919452chr12_103949091_+SINEAluAluSx1
CAediting_919453chr12_103949115_+SINEAluAluSx1
CAediting_919454chr12_103949122_+SINEAluAluSx1
CAediting_919455chr12_103949194_+SINEAluAluSx1
CAediting_919456chr12_103949195_+SINEAluAluSx1
CAediting_919457chr12_103949196_+SINEAluAluSx1
CAediting_919458chr12_103949209_+SINEAluAluSx1
CAediting_919459chr12_103949217_+SINEAluAluSx1
CAediting_919460chr12_103949220_+SINEAluAluSx1

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RNA A-to-I editing events in the alternative splicing sites for HSP90B1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_919366chr12_103932422_+103932416:1039324245SS0+4iGAGGTAAGC9.85GAGGTAGGC8.99

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000166598.11.HSP90B1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000166598.11.HSP90B1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HSP90B1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for HSP90B1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for HSP90B1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HSP90B1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for HSP90B1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for HSP90B1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for HSP90B1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for HSP90B1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HSP90B1P14625DB00615RifabutinEndoplasmin SmallMoleculeDrugapproved|investigational
HSP90B1P14625DB09130CopperEndoplasmin SmallMoleculeDrugapproved|investigational

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RelatedDiseases for HSP90B1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
HSP90B1C0005586Bipolar Disorder3PSYGENET
HSP90B1C0033578Prostatic Neoplasms1CTD_human
HSP90B1C0376358Malignant neoplasm of prostate1CTD_human